GREMLIN Database
CARB - Carbamoyl-phosphate synthase large chain
UniProt: Q9HP43 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1042 (1009)
Sequences: 2808 (1134)
Seq/√Len: 35.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
371_T408_S7.3331.00
476_Q480_A5.5121.00
239_D286_R4.9211.00
7_T41_R4.7511.00
7_T43_V4.7061.00
67_I96_V4.4001.00
567_V603_V4.3841.00
80_D109_H4.3231.00
102_E122_Y4.2981.00
301_R307_G4.2601.00
716_A741_D4.2341.00
877_K882_E4.2191.00
694_E829_A4.2001.00
677_D687_R4.1741.00
161_G205_V3.6701.00
205_V217_V3.6621.00
956_V970_V3.6491.00
450_E454_R3.5481.00
627_A631_A3.5361.00
231_Y246_N3.5191.00
301_R309_E3.4911.00
414_R629_E3.4631.00
8_I40_A3.4231.00
136_D287_E3.3941.00
930_A935_M3.3931.00
564_H640_D3.3791.00
555_S636_A3.3351.00
809_R897_Y3.2921.00
821_E825_E3.1771.00
448_V461_V3.1651.00
250_I475_F3.1381.00
277_M310_Y3.1341.00
73_A108_E3.1251.00
76_I109_H3.1201.00
246_N266_S3.0761.00
452_F472_L3.0671.00
781_E883_S3.0501.00
77_E109_H3.0331.00
603_V633_V3.0121.00
722_V762_V3.0101.00
953_T976_P3.0091.00
883_S886_D3.0051.00
143_A221_E2.9551.00
40_A343_L2.9101.00
481_A496_L2.8931.00
73_A77_E2.8601.00
519_A635_E2.8481.00
163_L202_V2.8191.00
41_R61_A2.7751.00
172_E198_F2.7731.00
776_A823_T2.7581.00
459_G469_E2.7051.00
777_V878_V2.6941.00
882_E886_D2.6931.00
452_F458_V2.6901.00
712_L745_R2.6901.00
73_A109_H2.6721.00
901_E940_A2.5831.00
409_L445_P2.5771.00
813_D817_A2.5741.00
128_D132_Q2.5701.00
147_I170_A2.5681.00
567_V634_V2.5671.00
960_V963_L2.5621.00
986_F990_D2.5581.00
171_V177_L2.5571.00
8_I343_L2.5491.00
406_E474_R2.5471.00
720_Y741_D2.4881.00
703_G717_E2.4841.00
402_G407_E2.4821.00
434_A460_D2.4801.00
198_F202_V2.4601.00
984_V994_A2.4541.00
563_A599_D2.4501.00
72_I96_V2.4241.00
698_S822_V2.4171.00
45_V75_V2.3711.00
491_A495_A2.3631.00
429_D432_L2.3370.99
285_I296_I2.3320.99
157_D160_E2.3060.99
967_F986_F2.3030.99
883_S887_L2.2880.99
73_A103_Q2.2800.99
740_D743_E2.2720.99
634_V667_L2.2640.99
69_P99_A2.2640.99
595_E873_K2.2620.99
489_D493_P2.2400.99
484_A492_T2.2300.99
139_Q283_A2.2180.99
703_G714_L2.2120.99
231_Y266_S2.2070.99
678_A831_D2.1830.99
751_A755_S2.1780.99
37_E340_K2.1730.99
824_T828_R2.1720.99
456_F460_D2.1710.99
515_V631_A2.1570.99
221_E309_E2.1530.99
567_V633_V2.1520.99
818_R821_E2.1320.99
786_G871_I2.1320.99
140_P309_E2.1310.99
452_F461_V2.1290.99
156_T216_E2.1270.99
697_I822_V2.1250.99
391_A908_R2.1050.99
177_L198_F2.0990.99
561_R599_D2.0990.99
874_L887_L2.0950.99
510_G513_V2.0900.99
74_E77_E2.0880.99
410_L498_Y2.0820.99
255_I440_P2.0780.99
953_T978_A2.0650.99
967_F990_D2.0630.99
772_L811_L2.0500.99
284_V312_V2.0440.99
98_A118_L2.0270.98
406_E477_N2.0210.98
69_P103_Q2.0140.98
458_V472_L2.0130.98
386_F442_P2.0060.98
712_L741_D1.9750.98
430_D454_R1.9670.98
177_L197_D1.9670.98
184_T216_E1.9650.98
782_D885_A1.9590.98
139_Q280_A1.9570.98
680_D687_R1.9530.98
680_D728_Y1.9500.98
64_I927_M1.9280.98
195_V204_R1.9270.98
976_P995_L1.9260.98
741_D745_R1.9190.98
621_F637_T1.9180.98
2_T112_D1.9050.98
38_E340_K1.8990.98
145_T173_A1.8970.98
751_A760_V1.8920.98
197_D200_A1.8880.98
663_E677_D1.8820.98
595_E877_K1.8820.98
517_D521_T1.8780.97
77_E108_E1.8740.97
512_D664_R1.8730.97
73_A105_V1.8700.97
266_S274_H1.8680.97
707_S710_G1.8580.97
300_W310_Y1.8510.97
519_A524_E1.8490.97
814_D845_G1.8430.97
171_V179_V1.8330.97
45_V72_I1.8250.97
449_F453_E1.8130.97
774_V823_T1.8120.97
76_I111_V1.8070.97
7_T61_A1.8040.97
500_N518_V1.7970.97
448_V467_F1.7910.97
701_D717_E1.7880.97
157_D215_A1.7740.96
1004_P1008_T1.7710.96
101_A118_L1.7710.96
596_A877_K1.7700.96
984_V996_T1.7650.96
156_T160_E1.7620.96
145_T170_A1.7580.96
437_L451_A1.7380.96
713_E717_E1.7370.96
705_A714_L1.7360.96
778_S828_R1.7340.96
181_A217_V1.7310.96
746_R750_E1.7300.96
656_A664_R1.7240.96
772_L842_V1.7240.96
752_V760_V1.7220.96
483_A486_S1.7160.96
133_R287_E1.7160.96
524_E635_E1.7090.96
691_L826_I1.7050.96
452_F475_F1.7040.96
818_R822_V1.7010.95
181_A219_V1.6990.95
457_T460_D1.6970.95
209_L215_A1.6920.95
449_F475_F1.6910.95
566_V672_M1.6860.95
698_S846_E1.6810.95
462_N472_L1.6720.95
404_T549_S1.6680.95
1018_G1038_D1.6670.95
772_L819_V1.6620.95
122_Y129_L1.6560.95
776_A836_L1.6530.95
288_L315_V1.6530.95
177_L201_L1.6510.95
147_I160_E1.6420.95
691_L829_A1.6320.94
962_G1021_A1.6290.94
812_G845_G1.6260.94
596_A880_A1.6190.94
514_A517_D1.6190.94
516_D520_A1.6110.94
71_A75_V1.6070.94
539_A542_P1.6060.94
701_D764_E1.6010.94
978_A1015_M1.5980.94
84_V111_V1.5940.94
812_G815_I1.5920.94
231_Y281_A1.5780.93
564_H598_I1.5750.93
196_H200_A1.5730.93
627_A657_P1.5690.93
131_R135_A1.5680.93
181_A201_L1.5680.93
734_A751_A1.5660.93
998_A1030_P1.5630.93
815_I847_V1.5600.93
398_A415_S1.5580.93
123_A287_E1.5540.93
698_S818_R1.5500.93
842_V847_V1.5500.93
101_A107_D1.5470.93
689_N699_Q1.5430.92
69_P72_I1.5410.92
413_L445_P1.5410.92
772_L847_V1.5380.92
808_P816_L1.5340.92
642_V667_L1.5320.92
932_D935_M1.5260.92
593_L600_A1.5250.92
503_V507_A1.5220.92
237_A346_R1.5210.92
640_D670_E1.5140.92
517_D520_A1.5090.92
593_L880_A1.5040.91
751_A754_V1.5000.91
643_M876_A1.4940.91
777_V871_I1.4880.91
803_A901_E1.4860.91
481_A493_P1.4850.91
405_F470_W1.4850.91
529_Q544_Y1.4810.91
477_N496_L1.4800.91
456_F461_V1.4770.91
69_P96_V1.4760.91
511_G515_V1.4730.91
478_V498_Y1.4710.90
273_G308_G1.4660.90
818_R847_V1.4620.90
490_V517_D1.4600.90
958_L966_R1.4570.90
105_V109_H1.4540.90
238_G346_R1.4480.90
876_A880_A1.4460.90
509_D514_A1.4440.90
627_A665_R1.4410.90
882_E887_L1.4390.89
250_I261_T1.4360.89
434_A464_H1.4300.89
817_A820_R1.4270.89
654_V658_L1.4220.89
687_R728_Y1.4200.89
86_A97_T1.4190.89
815_I845_G1.4190.89
434_A456_F1.4150.89
485_A493_P1.4080.88
778_S783_V1.4050.88
433_A461_V1.3970.88
132_Q136_D1.3900.88
99_A102_E1.3870.88
561_R565_S1.3860.88
979_I994_A1.3850.88
692_L849_V1.3840.88
822_V847_V1.3800.87
783_V828_R1.3780.87
142_P311_R1.3770.87
337_V353_E1.3730.87
678_A681_L1.3720.87
519_A632_D1.3710.87
67_I72_I1.3690.87
766_L843_Q1.3650.87
566_V593_L1.3640.87
462_N466_G1.3620.87
421_S505_A1.3580.87
430_D460_D1.3550.86
147_I161_G1.3520.86
997_A1005_Y1.3510.86
681_L829_A1.3470.86
501_S511_G1.3470.86
557_V636_A1.3440.86
600_A880_A1.3430.86
963_L982_G1.3420.86
697_I847_V1.3410.86
250_I448_V1.3410.86
566_V880_A1.3360.86
565_S599_D1.3310.85
452_F476_Q1.3240.85
171_V201_L1.3140.85
988_V996_T1.3140.85
823_T840_L1.3100.84
815_I842_V1.3090.84
234_M337_V1.3090.84
1022_A1028_A1.3090.84
478_V496_L1.3020.84
970_V977_A1.3010.84
124_T296_I1.3010.84
158_I201_L1.2910.84
485_A506_L1.2890.83
715_A720_Y1.2840.83
38_E345_K1.2790.83
453_E482_S1.2740.83
524_E632_D1.2690.83
784_L889_A1.2680.82
276_E300_W1.2670.82
270_P273_G1.2660.82
818_R846_E1.2620.82
357_Q540_S1.2610.82
98_A129_L1.2610.82
68_E71_A1.2600.82
303_D307_G1.2550.82
421_S501_S1.2530.82
689_N702_G1.2500.82
409_L475_F1.2490.81
481_A489_D1.2420.81
474_R477_N1.2380.81
9_L84_V1.2340.81
643_M879_M1.2320.81
515_V665_R1.2320.81
826_I838_V1.2240.80
748_V752_V1.2200.80
985_E989_S1.2170.80
250_I263_V1.2160.80
752_V755_S1.2110.79
1032_A1036_V1.2050.79
631_A665_R1.2050.79
420_P446_Y1.2050.79
998_A1034_R1.2040.79
158_I163_L1.2030.79
805_V933_P1.1970.79
456_F464_H1.1930.78
410_L478_V1.1900.78
84_V106_L1.1870.78
655_G658_L1.1860.78
690_R694_E1.1850.78
816_L820_R1.1830.78
4_D112_D1.1800.78
161_G219_V1.1760.77
988_V994_A1.1760.77
470_W474_R1.1690.77
449_F479_A1.1680.77
183_T192_S1.1670.77
484_A489_D1.1630.77
144_S220_T1.1570.76
619_G637_T1.1560.76
509_D513_V1.1540.76
169_D172_E1.1540.76
485_A503_V1.1510.76
345_K350_I1.1500.76
878_V887_L1.1490.76
822_V840_L1.1470.76
263_V371_T1.1460.76
528_K554_G1.1400.75
280_A310_Y1.1400.75
560_D619_G1.1330.75
123_A133_R1.1320.75
590_V617_S1.1310.75
221_E311_R1.1290.74
461_V475_F1.1280.74
123_A136_D1.1260.74
207_T211_L1.1250.74
462_N469_E1.1210.74
32_C58_M1.1140.73
631_A667_L1.1130.73
124_T734_A1.1130.73
356_G540_S1.1120.73
978_A995_L1.1100.73
406_E496_L1.1060.73
234_M285_I1.1050.73
437_L465_T1.1040.73
69_P73_A1.1020.73
591_R616_T1.1020.73
788_V820_R1.1010.73
404_T496_L1.1010.73
97_T113_V1.1000.72
629_E632_D1.1000.72
139_Q312_V1.0990.72
69_P105_V1.0970.72
45_V100_L1.0920.72
738_V760_V1.0900.72
122_Y185_Y1.0880.72
98_A122_Y1.0860.71
240_S361_A1.0850.71
877_K887_L1.0850.71
231_Y241_C1.0830.71
754_V760_V1.0800.71
862_F927_M1.0800.71
337_V350_I1.0790.71
596_A882_E1.0780.71
131_R220_T1.0770.71
981_R996_T1.0760.71
490_V523_P1.0720.70
525_R548_R1.0720.70
135_A141_V1.0720.70
17_Q190_S1.0690.70
436_Y447_A1.0680.70
129_L132_Q1.0680.70
205_V219_V1.0650.70
430_D434_A1.0630.70
504_A510_G1.0620.70
1010_A1034_R1.0620.70
450_E453_E1.0620.70
241_C282_V1.0610.70
999_V1007_S1.0590.70
1003_I1008_T1.0590.70
461_V472_L1.0560.69
201_L219_V1.0550.69
11_I93_G1.0540.69
1010_A1037_N1.0530.69
11_I72_I1.0520.69
436_Y441_S1.0520.69
788_V816_L1.0490.69
275_Q278_R1.0490.69
140_P221_E1.0480.69
227_V468_R1.0480.69
11_I67_I1.0460.69
823_T838_V1.0460.69
220_T223_I1.0400.68
161_G181_A1.0390.68
632_D635_E1.0380.68
204_R208_G1.0370.68
240_S346_R1.0370.68
271_D275_Q1.0370.68
569_V630_V1.0320.68
139_Q296_I1.0300.67
272_D308_G1.0270.67
119_D129_L1.0270.67
99_A103_Q1.0260.67
241_C286_R1.0250.67
451_A456_F1.0200.67
745_R749_E1.0190.67
898_S929_T1.0190.67
398_A412_A1.0170.66
697_I818_R1.0150.66
963_L983_E1.0150.66
83_G86_A1.0130.66
590_V600_A1.0130.66
528_K549_S1.0080.66
197_D1003_I1.0080.66
998_A1002_E1.0060.65
404_T408_S1.0060.65
954_A1019_I1.0030.65
34_A350_I1.0030.65
241_C285_I1.0000.65
181_A205_V0.9990.65
433_A454_R0.9990.65
131_R146_T0.9980.65
263_V405_F0.9960.65
177_L202_V0.9950.65
728_Y758_K0.9920.64
233_V243_I0.9910.64
888_D893_V0.9910.64
437_L447_A0.9910.64
475_F479_A0.9840.64
33_R615_D0.9830.64
826_I849_V0.9820.64
430_D456_F0.9800.63
279_N283_A0.9780.63
473_Q476_Q0.9780.63
36_Q58_M0.9780.63
803_A902_V0.9770.63
828_R831_D0.9770.63
247_M262_V0.9730.63
956_V987_L0.9730.63
284_V639_A0.9720.63
896_Q929_T0.9720.63
734_A752_V0.9710.63
625_I654_V0.9700.63
303_D466_G0.9660.62
403_R528_K0.9610.62
806_I863_V0.9590.62
820_R893_V0.9580.62
627_A654_V0.9560.61
504_A514_A0.9560.61
706_T710_G0.9550.61
238_G348_H0.9510.61
177_L639_A0.9510.61
119_D123_A0.9500.61
373_V376_W0.9490.61
866_A898_S0.9480.61
955_V980_R0.9470.61
275_Q536_E0.9460.61
163_L177_L0.9450.61
266_S366_I0.9450.61
275_Q537_F0.9430.60
43_V75_V0.9410.60
9_L76_I0.9410.60
403_R549_S0.9380.60
163_L181_A0.9370.60
458_V476_Q0.9350.60
352_N355_T0.9330.60
369_V408_S0.9320.59
980_R983_E0.9300.59
234_M242_I0.9300.59
22_A574_I0.9290.59
197_D1012_A0.9240.59
599_D619_G0.9210.59
769_A841_A0.9200.58
410_L470_W0.9180.58
711_A748_V0.9170.58
977_A994_A0.9170.58
748_V751_A0.9170.58
998_A1001_A0.9150.58
226_W311_R0.9140.58
774_V819_V0.9140.58
231_Y274_H0.9140.58
458_V473_Q0.9120.58
1001_A1005_Y0.9090.58
808_P811_L0.9060.57
833_V878_V0.9060.57
202_V206_R0.9060.57
358_T362_F0.9060.57
395_T574_I0.9030.57
6_R41_R0.8940.56
353_E614_Y0.8940.56
748_V760_V0.8900.56
646_F875_A0.8860.56
126_D216_E0.8850.56
481_A484_A0.8840.55
979_I983_E0.8830.55
280_A284_V0.8830.55
171_V205_V0.8830.55
708_V745_R0.8820.55
1030_P1034_R0.8820.55
997_A1004_P0.8810.55
790_E810_G0.8810.55
142_P223_I0.8810.55
410_L502_A0.8800.55
163_L198_F0.8800.55
72_I75_V0.8800.55
362_F541_T0.8790.55
525_R632_D0.8790.55
589_A643_M0.8780.55
275_Q362_F0.8770.55
271_D537_F0.8760.55
587_V1032_A0.8750.55
460_D463_D0.8750.55
484_A488_G0.8740.55
281_A298_F0.8740.55
490_V514_A0.8730.54
231_Y267_Q0.8730.54
247_M315_V0.8720.54
180_I194_V0.8710.54
105_V108_E0.8710.54
223_I253_M0.8700.54
490_V518_V0.8700.54
143_A309_E0.8700.54
193_G204_R0.8700.54
700_P730_L0.8700.54
299_A311_R0.8680.54
957_D983_E0.8670.54
1022_A1031_V0.8670.54
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62_V290_I0.5220.26
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234_M357_Q0.5160.26
240_S535_G0.5160.26
587_V921_K0.5160.26
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491_A717_E0.5150.26
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720_Y723_L0.5150.26
385_D738_V0.5150.26
449_F502_A0.5150.26
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979_I982_G0.5140.26
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699_Q702_G0.5140.26
508_S684_D0.5140.26
240_S531_D0.5140.26
81_P850_L0.5130.26
383_E697_I0.5130.26
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371_T405_F0.5130.26
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773_D866_A0.5120.26
634_V877_K0.5120.26
391_A940_A0.5120.26
5_S345_K0.5120.26
491_A519_A0.5120.26
817_A824_T0.5110.25
42_V530_V0.5110.25
199_E463_D0.5110.25
140_P386_F0.5110.25
436_Y882_E0.5110.25
192_S391_A0.5110.25
393_K755_S0.5110.25
64_I929_T0.5100.25
724_V734_A0.5100.25
59_A720_Y0.5100.25
239_D296_I0.5100.25
227_V532_T0.5100.25
945_S1036_V0.5090.25
65_E106_L0.5090.25
102_E213_R0.5090.25
22_A605_N0.5090.25
113_V118_L0.5090.25
356_G993_D0.5090.25
224_T253_M0.5080.25
334_I579_G0.5080.25
826_I914_P0.5080.25
967_F992_R0.5080.25
754_V758_K0.5080.25
398_A416_S0.5080.25
667_L864_S0.5080.25
141_V285_I0.5080.25
408_S412_A0.5080.25
169_D215_A0.5070.25
340_K345_K0.5070.25
713_E988_V0.5070.25
433_A513_V0.5070.25
525_R842_V0.5060.25
981_R997_A0.5060.25
603_V667_L0.5060.25
431_E999_V0.5060.25
124_T678_A0.5060.25
433_A816_L0.5050.25
80_D677_D0.5050.25
42_V259_E0.5050.25
963_L980_R0.5040.25
312_V739_H0.5040.25
27_S856_S0.5040.25
544_Y914_P0.5040.25
108_E458_V0.5040.25
820_R891_E0.5030.25
574_I702_G0.5030.25
1019_I1034_R0.5030.25
36_Q627_A0.5030.25
276_E310_Y0.5030.25
119_D122_Y0.5030.25
118_L122_Y0.5030.25
217_V224_T0.5030.25
33_R226_W0.5030.25
561_R967_F0.5020.25
434_A437_L0.5020.25
863_V871_I0.5020.25
373_V413_L0.5010.25
557_V560_D0.5010.25
143_A311_R0.5010.25
158_I177_L0.5010.25
337_V356_G0.5010.25
271_D533_C0.5010.25
352_N539_A0.5010.25
274_H536_E0.5010.25
433_A813_D0.5000.25
213_R218_L0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1a9xA 3 0.9587 100 0.421 Contact Map
3jrxA 1 0.3964 100 0.894 Contact Map
3glkA 1 0.3781 100 0.894 Contact Map
3orqA 2 0.3445 100 0.899 Contact Map
2vpqA 2 0.3983 100 0.901 Contact Map
1ulzA 2 0.404 100 0.901 Contact Map
3q2oA 2 0.3474 100 0.903 Contact Map
2dzdA 2 0.3973 100 0.904 Contact Map
1w96A 1 0.406 100 0.905 Contact Map
2dwcA 4 0.356 100 0.908 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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