Q9HP26 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q9HP26 - Cold shock protein

UniProt:	Q9HP26	Sequences: MASGKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDVGGPDLEEGQEVEFDIESSPKGPRATNLVRNE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	69 (58)
Sequences:	511 (308)
Seq/√Len:	40.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
20_T	27_D	2.736	1.00
50_E	66_V	2.706	1.00
4_G	62_A	2.504	1.00
17_F	34_H	2.347	1.00
18_I	62_A	2.266	1.00
5_K	28_D	2.105	0.99
56_S	59_G	1.986	0.99
6_V	43_L	1.829	0.98
46_G	65_L	1.792	0.98
52_D	64_N	1.586	0.95
5_K	27_D	1.575	0.95
18_I	49_V	1.564	0.95
8_F	13_G	1.503	0.94
12_T	33_F	1.483	0.93
47_Q	51_F	1.429	0.92
7_D	30_D	1.362	0.90
17_F	32_F	1.338	0.89
40_G	64_N	1.329	0.89
9_F	13_G	1.289	0.87
33_F	43_L	1.286	0.87
32_F	37_D	1.253	0.86
26_D	50_E	1.151	0.80
21_D	28_D	1.094	0.77
9_F	33_F	1.087	0.76
4_G	35_M	1.085	0.76
3_S	47_Q	1.081	0.76
20_T	51_F	1.075	0.76
7_D	13_G	1.051	0.74
6_V	42_D	1.037	0.73
15_Y	61_R	1.019	0.72
21_D	48_E	0.988	0.69
42_D	53_I	0.977	0.68
42_D	64_N	0.966	0.67
33_F	47_Q	0.946	0.66
9_F	35_M	0.943	0.66
40_G	43_L	0.919	0.63
49_V	60_P	0.903	0.62
15_Y	34_H	0.870	0.59
55_S	60_P	0.869	0.59
15_Y	65_L	0.868	0.59
15_Y	53_I	0.863	0.59
52_D	58_K	0.836	0.56
14_G	38_V	0.829	0.56
61_R	65_L	0.828	0.55
38_V	53_I	0.798	0.53
9_F	19_S	0.796	0.52
18_I	37_D	0.792	0.52
14_G	28_D	0.788	0.52
6_V	16_G	0.759	0.49
48_E	63_T	0.756	0.49
5_K	48_E	0.756	0.49
39_G	43_L	0.751	0.48
18_I	61_R	0.741	0.47
33_F	51_F	0.737	0.47
21_D	27_D	0.718	0.45
3_S	36_E	0.710	0.45
8_F	33_F	0.690	0.43
3_S	21_D	0.678	0.42
17_F	36_E	0.673	0.41
4_G	18_I	0.669	0.41
15_Y	32_F	0.663	0.40
52_D	63_T	0.662	0.40
58_K	61_R	0.642	0.39
31_V	37_D	0.636	0.38
15_Y	36_E	0.628	0.37
20_T	31_V	0.622	0.37
4_G	33_F	0.620	0.37
13_G	33_F	0.618	0.36
44_E	63_T	0.610	0.36
17_F	46_G	0.606	0.35
20_T	28_D	0.598	0.35
12_T	29_E	0.587	0.34
3_S	18_I	0.587	0.34
21_D	39_G	0.586	0.34
4_G	21_D	0.583	0.34
49_V	62_A	0.581	0.33
32_F	51_F	0.565	0.32
20_T	48_E	0.557	0.31
19_S	49_V	0.550	0.31
29_E	63_T	0.536	0.30
18_I	53_I	0.530	0.29
54_E	60_P	0.529	0.29
14_G	39_G	0.516	0.28
39_G	42_D	0.512	0.28
16_G	43_L	0.509	0.28
5_K	19_S	0.502	0.27
29_E	65_L	0.500	0.27

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3camA	2	0.9275	99.6	0.258	Contact Map
3aqqA	4	0.942	99.6	0.272	Contact Map
1c9oA	2	0.913	99.5	0.274	Contact Map
2lxjA	1	0.913	99.5	0.278	Contact Map
3i2zB	2	0.9275	99.5	0.279	Contact Map
1g6pA	1	0.913	99.5	0.289	Contact Map
3a0jA	1	0.9275	99.5	0.289	Contact Map
2k5nA	1	0.9275	99.5	0.292	Contact Map
2kcmA	1	0.913	99.5	0.297	Contact Map
1wfqA	1	0.913	99.5	0.298	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0046 seconds.