Q9HNX9 - HALSA - GREMLIN Contacts

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Q9HNX9 - Uncharacterized protein

UniProt:	Q9HNX9	Sequences: MRSAAESPCMPRVLVPIDGSPQAETAINHALTEFDDATITVLNVIDPIEAGYTSQAAVPGYSEEWFEQSKAAAEELFADAQEAADEYDTTLETATEVGRPSRTIVSYAEENDIDKIVMGSHGRSGVTRILLGSVAENVVRRSPIPVTIVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	150 (135)
Sequences:	19367 (15703)
Seq/√Len:	1351.5

ECOLI - USPF USPG USPE USPC USPA USPD
BACSU - NHAX YXIE
HALSA - Q9HNX9 Q9HRP5 Q9HRD8 Q9HMJ0 Q9HPP5 Q9HHV8 Q9HPQ8 Q9HPF7 Q9HMI9 Q9HP90 Q9HHX5 Q9HHY0 Q9HMU1
SULSO - Q97X90 Q97V57 Q7LXW4 Q97U40

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
40_T	94_A	3.059	1.00
12_R	40_T	2.724	1.00
101_S	137_N	2.634	1.00
14_L	113_I	2.619	1.00
38_T	92_E	2.554	1.00
12_R	38_T	2.444	1.00
29_H	147_T	2.427	1.00
94_A	107_Y	2.206	1.00
115_K	147_T	2.202	1.00
107_Y	111_N	2.198	1.00
118_M	138_V	1.893	1.00
81_Q	93_T	1.889	1.00
98_G	103_T	1.882	1.00
40_T	92_E	1.862	1.00
116_I	144_I	1.857	1.00
136_E	140_R	1.856	1.00
96_E	103_T	1.836	1.00
40_T	111_N	1.799	1.00
108_A	116_I	1.797	1.00
31_L	35_D	1.795	1.00
40_T	113_I	1.733	1.00
42_L	107_Y	1.726	1.00
38_T	90_T	1.716	1.00
40_T	107_Y	1.704	1.00
16_P	118_M	1.666	1.00
15_V	30_A	1.624	1.00
44_V	103_T	1.623	1.00
28_N	83_A	1.597	1.00
12_R	114_D	1.591	1.00
16_P	104_I	1.514	1.00
103_T	106_S	1.496	1.00
81_Q	85_D	1.493	1.00
109_E	143_P	1.443	1.00
116_I	142_S	1.397	1.00
70_K	74_E	1.384	1.00
105_V	141_R	1.349	1.00
37_A	114_D	1.347	1.00
43_N	73_A	1.339	1.00
96_E	107_Y	1.324	1.00
137_N	141_R	1.307	1.00
108_A	143_P	1.290	1.00
24_E	83_A	1.289	1.00
15_V	27_I	1.282	1.00
94_A	111_N	1.268	1.00
74_E	78_A	1.254	1.00
116_I	138_V	1.239	1.00
32_T	35_D	1.203	1.00
142_S	146_V	1.173	1.00
10_M	145_P	1.140	1.00
100_P	134_V	1.133	1.00
78_A	81_Q	1.128	1.00
76_L	80_A	1.124	1.00
42_L	96_E	1.108	1.00
126_V	130_L	1.099	1.00
73_A	77_F	1.077	1.00
66_F	70_K	1.069	1.00
76_L	79_D	1.068	1.00
10_M	29_H	1.064	1.00
44_V	100_P	1.063	1.00
120_S	148_I	1.045	1.00
69_S	72_A	1.043	1.00
108_A	144_I	1.000	1.00
128_R	136_E	0.998	1.00
139_V	148_I	0.993	1.00
13_V	115_K	0.989	1.00
80_A	83_A	0.984	1.00
45_I	97_V	0.982	1.00
17_I	80_A	0.973	1.00
78_A	82_E	0.966	1.00
72_A	76_L	0.957	1.00
71_A	75_E	0.957	1.00
105_V	108_A	0.954	1.00
108_A	113_I	0.935	1.00
20_S	23_A	0.934	1.00
42_L	104_I	0.934	1.00
118_M	135_A	0.926	1.00
61_Y	64_E	0.917	1.00
24_E	79_D	0.916	1.00
12_R	111_N	0.909	1.00
23_A	26_A	0.909	1.00
67_E	71_A	0.906	1.00
80_A	84_A	0.906	1.00
41_V	91_L	0.906	1.00
12_R	113_I	0.894	1.00
19_G	43_N	0.890	1.00
29_H	149_V	0.885	1.00
73_A	76_L	0.884	1.00
83_A	86_E	0.877	1.00
72_A	75_E	0.867	1.00
27_I	41_V	0.866	1.00
45_I	95_T	0.865	1.00
35_D	114_D	0.861	1.00
33_E	87_Y	0.861	1.00
78_A	93_T	0.860	1.00
30_A	117_V	0.859	1.00
123_R	127_T	0.855	1.00
77_F	93_T	0.855	1.00
107_Y	113_I	0.854	1.00
69_S	73_A	0.852	1.00
17_I	41_V	0.851	1.00
27_I	80_A	0.848	1.00
59_P	62_S	0.846	1.00
125_G	128_R	0.842	1.00
73_A	95_T	0.838	1.00
135_A	148_I	0.837	1.00
120_S	135_A	0.829	1.00
105_V	138_V	0.827	1.00
24_E	28_N	0.823	1.00
84_A	91_L	0.822	1.00
17_I	27_I	0.798	1.00
74_E	93_T	0.794	1.00
29_H	145_P	0.793	1.00
14_L	116_I	0.790	1.00
82_E	86_E	0.788	1.00
16_P	119_G	0.783	1.00
14_L	42_L	0.782	1.00
104_I	138_V	0.778	1.00
105_V	142_S	0.777	1.00
82_E	85_D	0.777	1.00
99_R	102_R	0.777	1.00
79_D	82_E	0.776	1.00
117_V	147_T	0.773	1.00
15_V	39_I	0.771	1.00
63_E	67_E	0.760	1.00
17_I	24_E	0.748	1.00
79_D	83_A	0.748	1.00
10_M	115_K	0.746	1.00
25_T	28_N	0.734	1.00
41_V	84_A	0.729	1.00
30_A	39_I	0.728	1.00
32_T	37_A	0.724	1.00
77_F	81_Q	0.720	1.00
75_E	79_D	0.718	1.00
71_A	74_E	0.718	1.00
122_G	131_L	0.714	1.00
17_I	26_A	0.713	1.00
92_E	111_N	0.711	1.00
14_L	107_Y	0.701	1.00
11_P	37_A	0.699	1.00
17_I	23_A	0.698	1.00
20_S	122_G	0.698	1.00
125_G	129_I	0.698	1.00
126_V	129_I	0.697	1.00
33_E	88_D	0.696	1.00
12_R	37_A	0.695	1.00
32_T	39_I	0.692	1.00
10_M	114_D	0.692	1.00
75_E	78_A	0.689	1.00
11_P	114_D	0.684	1.00
43_N	76_L	0.682	1.00
41_V	80_A	0.678	1.00
63_E	66_F	0.674	1.00
118_M	148_I	0.674	1.00
112_D	144_I	0.673	1.00
42_L	103_T	0.668	1.00
101_S	138_V	0.663	1.00
67_E	70_K	0.661	1.00
64_E	68_Q	0.658	1.00
64_E	67_E	0.655	1.00
94_A	97_V	0.654	1.00
31_L	34_F	0.650	1.00
68_Q	72_A	0.646	1.00
131_L	135_A	0.645	1.00
103_T	107_Y	0.644	1.00
68_Q	71_A	0.632	1.00
66_F	97_V	0.622	1.00
30_A	37_A	0.617	1.00
101_S	134_V	0.617	1.00
62_S	65_W	0.616	1.00
45_I	73_A	0.615	1.00
22_Q	25_T	0.608	1.00
101_S	105_V	0.606	1.00
13_V	117_V	0.596	1.00
120_S	130_L	0.594	1.00
81_Q	84_A	0.589	1.00
109_E	144_I	0.586	1.00
21_P	24_E	0.584	1.00
105_V	137_N	0.581	1.00
98_G	106_S	0.576	1.00
117_V	149_V	0.576	1.00
81_Q	91_L	0.572	1.00
10_M	37_A	0.570	1.00
24_E	80_A	0.565	1.00
101_S	141_R	0.561	1.00
19_G	76_L	0.559	1.00
70_K	97_V	0.559	1.00
102_R	106_S	0.553	1.00
24_E	76_L	0.549	1.00
15_V	26_A	0.546	1.00
49_E	52_Y	0.535	1.00
77_F	80_A	0.531	1.00
121_H	135_A	0.529	1.00
18_D	23_A	0.521	1.00
48_I	51_G	0.521	1.00
16_P	100_P	0.521	1.00
138_V	146_V	0.520	1.00
13_V	32_T	0.520	1.00
62_S	66_F	0.519	1.00
139_V	146_V	0.514	1.00
26_A	117_V	0.513	1.00
119_G	149_V	0.511	1.00
83_A	87_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2gm3A	2	0.8267	99.9	0.198	Contact Map
3hgmA	2	0.94	99.9	0.209	Contact Map
3s3tA	4	0.94	99.9	0.211	Contact Map
1mjhA	2	0.9133	99.9	0.216	Contact Map
4wnyA	2	0.8467	99.9	0.22	Contact Map
5ahwA	4	0.94	99.9	0.224	Contact Map
2dumA	2	0.9133	99.9	0.227	Contact Map
3fg9A	3	0.96	99.9	0.234	Contact Map
1tq8A	4	0.82	99.9	0.237	Contact Map
3fdxA	2	0.82	99.9	0.238	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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