NADK - HALSA - GREMLIN Contacts

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NADK - NAD kinase

UniProt:	Q9HNX7	Sequences: MHVGIVAQRGNERATSLAGEIREQLRALEVTVWVDTATAEALACAGECGRDTTAFTDCDLVVSIGGDGTFLFAARGAGATPILGVNLGEVGFLNAVAPADAVEAVREEVNRYRETGAVRCREVPRVVAAGDGWASTPALNEVAIQGEQRGHGHGVAVDVRVDGSQYEATRADGVLVATPTGSTAYNLSEGGPLVQPSVDALVVTEMCGADALPPLVTGLDSEIRIRVETLDDGGEGRVVVASDGGRLTRVDPPVEMTVTAADEPARVAGPAADFFEALSKLE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	282 (262)
Sequences:	4083 (2830)
Seq/√Len:	174.9

ECOLI - NADK
BACSU - NADK2 NADK1
HALSA - NADK
SULSO - NADK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
118_V	266_R	4.165	1.00
222_E	259_T	3.714	1.00
224_R	255_E	3.665	1.00
162_D	221_S	3.599	1.00
107_E	112_Y	3.220	1.00
186_N	204_T	3.158	1.00
158_D	226_R	3.072	1.00
123_V	259_T	3.064	1.00
199_D	219_L	3.047	1.00
224_R	257_T	3.015	1.00
157_V	225_I	2.956	1.00
128_A	254_V	2.936	1.00
28_L	106_R	2.893	1.00
123_V	135_S	2.820	1.00
226_R	255_E	2.755	1.00
70_F	267_V	2.618	1.00
194_V	202_V	2.531	1.00
125_R	257_T	2.515	1.00
119_R	180_T	2.457	1.00
20_E	102_V	2.442	1.00
118_V	264_P	2.431	1.00
222_E	257_T	2.278	1.00
163_G	224_R	2.240	1.00
160_R	165_Q	2.206	1.00
100_D	103_E	2.190	1.00
24_Q	106_R	2.175	1.00
106_R	110_N	2.163	1.00
203_V	217_T	2.121	1.00
124_P	142_V	2.073	1.00
159_V	203_V	2.048	1.00
160_R	226_R	2.048	1.00
164_S	273_D	1.992	1.00
142_V	240_V	1.864	1.00
125_R	135_S	1.861	1.00
160_R	224_R	1.859	1.00
144_I	225_I	1.839	1.00
117_A	269_G	1.828	1.00
125_R	259_T	1.819	1.00
14_A	18_A	1.810	1.00
61_V	77_A	1.807	1.00
64_I	87_L	1.792	1.00
163_G	222_E	1.784	1.00
121_R	265_A	1.735	1.00
137_P	261_A	1.707	1.00
23_E	27_A	1.703	1.00
70_F	84_G	1.683	1.00
116_G	266_R	1.670	1.00
24_Q	28_L	1.654	1.00
158_D	228_E	1.649	1.00
161_V	223_I	1.635	1.00
189_E	204_T	1.600	1.00
155_V	238_V	1.585	1.00
75_R	245_G	1.583	1.00
165_Q	168_A	1.561	1.00
122_E	201_L	1.547	1.00
159_V	174_V	1.532	1.00
161_V	221_S	1.484	1.00
123_V	261_A	1.470	1.00
176_V	225_I	1.448	1.00
127_V	132_G	1.421	1.00
21_I	105_V	1.419	1.00
183_T	193_L	1.413	1.00
189_E	207_C	1.393	1.00
121_R	261_A	1.390	1.00
142_V	258_V	1.389	1.00
21_I	64_I	1.386	1.00
74_A	82_I	1.381	1.00
95_A	269_G	1.349	1.00
70_F	94_N	1.331	1.00
127_V	257_T	1.327	1.00
79_A	263_E	1.326	1.00
129_A	132_G	1.326	1.00
24_Q	102_V	1.321	1.00
127_V	255_E	1.317	1.00
142_V	242_S	1.287	1.00
90_V	209_A	1.286	1.00
158_D	168_A	1.282	1.00
96_V	104_A	1.278	1.00
217_T	223_I	1.273	1.00
164_S	276_E	1.269	1.00
60_L	108_E	1.262	1.00
138_A	242_S	1.247	1.00
195_Q	218_G	1.246	1.00
194_V	216_V	1.246	1.00
35_D	38_T	1.235	1.00
192_P	202_V	1.234	1.00
175_L	189_E	1.208	1.00
19_G	23_E	1.205	1.00
199_D	264_P	1.201	1.00
177_A	202_V	1.200	1.00
17_L	20_E	1.191	1.00
192_P	216_V	1.190	1.00
83_L	108_E	1.185	1.00
124_P	242_S	1.181	1.00
274_F	278_L	1.175	1.00
33_W	58_C	1.166	1.00
176_V	258_V	1.159	1.00
121_R	264_P	1.155	1.00
194_V	200_A	1.125	1.00
38_T	41_A	1.122	1.00
16_S	20_E	1.117	1.00
172_D	185_Y	1.116	1.00
195_Q	275_F	1.109	1.00
123_V	262_D	1.101	1.00
15_T	18_A	1.094	1.00
79_A	266_R	1.093	1.00
60_L	268_A	1.090	1.00
141_E	175_L	1.085	1.00
86_N	91_G	1.084	1.00
22_R	26_R	1.080	1.00
50_R	53_T	1.077	1.00
85_V	96_V	1.075	1.00
227_V	238_V	1.073	1.00
12_E	15_T	1.067	1.00
24_Q	105_V	1.062	1.00
157_V	171_A	1.059	1.00
103_E	107_E	1.039	0.99
16_S	19_G	1.039	0.99
162_D	222_E	1.034	0.99
112_Y	271_A	1.022	0.99
251_D	254_V	1.021	0.99
92_F	275_F	1.019	0.99
128_A	131_D	1.015	0.99
176_V	203_V	1.014	0.99
83_L	96_V	1.013	0.99
201_L	223_I	0.997	0.99
119_R	196_P	0.991	0.99
276_E	280_K	0.986	0.99
237_R	251_D	0.979	0.99
187_L	209_A	0.969	0.99
176_V	201_L	0.968	0.99
83_L	268_A	0.957	0.99
62_V	105_V	0.947	0.99
180_T	196_P	0.942	0.99
50_R	54_A	0.937	0.99
120_C	199_D	0.936	0.99
120_C	260_A	0.929	0.99
120_C	200_A	0.928	0.99
161_V	217_T	0.926	0.99
160_R	163_G	0.917	0.99
127_V	254_V	0.915	0.99
136_T	242_S	0.911	0.99
120_C	179_P	0.901	0.99
219_L	260_A	0.899	0.98
143_A	175_L	0.899	0.98
217_T	221_S	0.898	0.98
36_T	40_E	0.894	0.98
195_Q	221_S	0.885	0.98
129_A	133_W	0.885	0.98
237_R	249_R	0.884	0.98
260_A	264_P	0.874	0.98
187_L	192_P	0.873	0.98
53_T	56_T	0.869	0.98
137_P	263_E	0.869	0.98
15_T	19_G	0.865	0.98
23_E	26_R	0.864	0.98
18_A	22_R	0.861	0.98
22_R	34_V	0.860	0.98
107_E	270_P	0.859	0.98
61_V	82_I	0.858	0.98
39_A	42_L	0.855	0.98
132_G	135_S	0.852	0.98
199_D	220_D	0.850	0.98
55_F	77_A	0.844	0.98
272_A	277_A	0.841	0.98
78_G	261_A	0.839	0.98
108_E	114_E	0.831	0.97
123_V	137_P	0.825	0.97
166_Y	275_F	0.823	0.97
199_D	260_A	0.821	0.97
147_E	237_R	0.810	0.97
128_A	133_W	0.810	0.97
108_E	111_R	0.810	0.97
21_I	101_A	0.808	0.97
202_V	216_V	0.808	0.97
195_Q	274_F	0.807	0.97
22_R	32_V	0.806	0.97
28_L	110_N	0.798	0.97
166_Y	217_T	0.797	0.97
111_R	114_E	0.797	0.97
27_A	102_V	0.796	0.97
104_A	270_P	0.796	0.97
139_L	180_T	0.796	0.97
21_I	62_V	0.795	0.97
225_I	258_V	0.794	0.97
30_V	109_V	0.794	0.97
103_E	106_R	0.793	0.97
156_A	170_R	0.793	0.97
95_A	184_A	0.791	0.97
153_H	245_G	0.789	0.97
25_L	32_V	0.780	0.96
74_A	265_A	0.778	0.96
121_R	139_L	0.777	0.96
141_E	145_Q	0.776	0.96
74_A	139_L	0.775	0.96
187_L	213_P	0.774	0.96
159_V	225_I	0.771	0.96
85_V	101_A	0.770	0.96
200_A	214_P	0.770	0.96
120_C	219_L	0.769	0.96
39_A	43_A	0.763	0.96
16_S	27_A	0.763	0.96
169_T	193_L	0.757	0.96
10_G	18_A	0.756	0.96
239_V	247_L	0.754	0.96
218_G	221_S	0.752	0.96
204_T	214_P	0.751	0.95
55_F	58_C	0.751	0.95
54_A	58_C	0.747	0.95
274_F	277_A	0.745	0.95
26_R	44_C	0.744	0.95
100_D	104_A	0.743	0.95
62_V	83_L	0.742	0.95
89_E	170_R	0.741	0.95
108_E	270_P	0.740	0.95
20_E	23_E	0.738	0.95
114_E	268_A	0.733	0.95
152_G	241_A	0.732	0.95
159_V	169_T	0.725	0.95
29_E	32_V	0.725	0.95
14_A	17_L	0.722	0.94
161_V	166_Y	0.721	0.94
124_P	256_M	0.720	0.94
128_A	251_D	0.720	0.94
78_G	121_R	0.715	0.94
197_S	218_G	0.715	0.94
273_D	277_A	0.706	0.94
31_T	47_E	0.706	0.94
174_V	203_V	0.703	0.94
210_D	213_P	0.703	0.94
239_V	249_R	0.702	0.94
156_A	168_A	0.701	0.93
68_G	88_G	0.700	0.93
139_L	265_A	0.697	0.93
26_R	31_T	0.697	0.93
63_S	70_F	0.695	0.93
126_V	240_V	0.692	0.93
186_N	202_V	0.688	0.93
122_E	138_A	0.687	0.93
126_V	250_V	0.686	0.93
77_A	80_T	0.685	0.93
120_C	201_L	0.683	0.93
63_S	73_A	0.682	0.93
26_R	33_W	0.678	0.92
196_P	274_F	0.674	0.92
24_Q	101_A	0.673	0.92
36_T	39_A	0.671	0.92
209_A	213_P	0.671	0.92
23_E	31_T	0.670	0.92
124_P	240_V	0.669	0.92
60_L	83_L	0.667	0.92
141_E	167_E	0.667	0.92
188_S	191_G	0.663	0.91
70_F	82_I	0.662	0.91
95_A	270_P	0.662	0.91
275_F	278_L	0.661	0.91
172_D	207_C	0.659	0.91
45_A	49_G	0.657	0.91
36_T	50_R	0.656	0.91
169_T	205_E	0.655	0.91
26_R	30_V	0.655	0.91
95_A	277_A	0.653	0.91
102_V	106_R	0.652	0.91
114_E	270_P	0.650	0.91
273_D	276_E	0.648	0.91
165_Q	279_S	0.647	0.90
79_A	121_R	0.646	0.90
153_H	241_A	0.646	0.90
208_G	213_P	0.645	0.90
48_C	51_D	0.642	0.90
19_G	26_R	0.642	0.90
78_G	137_P	0.640	0.90
200_A	216_V	0.639	0.90
119_R	274_F	0.638	0.90
220_D	260_A	0.636	0.90
45_A	48_C	0.635	0.90
17_L	21_I	0.635	0.90
17_L	98_P	0.633	0.89
28_L	109_V	0.633	0.89
82_I	265_A	0.633	0.89
146_G	153_H	0.632	0.89
13_R	144_I	0.630	0.89
146_G	152_G	0.627	0.89
72_F	75_R	0.626	0.89
141_E	245_G	0.626	0.89
126_V	256_M	0.626	0.89
148_Q	239_V	0.623	0.89
90_V	210_D	0.622	0.89
153_H	244_G	0.620	0.89
127_V	133_W	0.619	0.88
71_L	186_N	0.616	0.88
157_V	174_V	0.615	0.88
176_V	223_I	0.614	0.88
95_A	117_A	0.614	0.88
69_T	207_C	0.611	0.88
77_A	82_I	0.605	0.87
95_A	272_A	0.605	0.87
19_G	27_A	0.604	0.87
141_E	241_A	0.604	0.87
115_T	269_G	0.602	0.87
117_A	197_S	0.601	0.87
61_V	80_T	0.597	0.87
16_S	23_E	0.590	0.86
20_E	36_T	0.586	0.86
97_A	270_P	0.586	0.86
110_N	132_G	0.584	0.85
158_D	165_Q	0.584	0.85
133_W	136_T	0.583	0.85
28_L	102_V	0.583	0.85
157_V	238_V	0.582	0.85
157_V	168_A	0.580	0.85
72_F	245_G	0.580	0.85
189_E	206_M	0.577	0.85
12_E	16_S	0.575	0.85
168_A	228_E	0.575	0.85
141_E	244_G	0.574	0.84
27_A	33_W	0.573	0.84
188_S	262_D	0.572	0.84
145_Q	239_V	0.571	0.84
74_A	210_D	0.571	0.84
127_V	177_A	0.570	0.84
167_E	209_A	0.569	0.84
37_A	43_A	0.569	0.84
51_D	76_G	0.568	0.84
64_I	85_V	0.568	0.84
195_Q	211_A	0.567	0.84
18_A	37_A	0.565	0.83
13_R	26_R	0.562	0.83
61_V	83_L	0.561	0.83
23_E	28_L	0.559	0.83
175_L	205_E	0.559	0.83
98_P	206_M	0.559	0.83
125_R	133_W	0.557	0.83
166_Y	169_T	0.557	0.83
34_V	38_T	0.556	0.83
12_E	18_A	0.556	0.83
91_G	94_N	0.555	0.82
82_I	193_L	0.554	0.82
75_R	78_G	0.553	0.82
187_L	193_L	0.552	0.82
26_R	32_V	0.552	0.82
141_E	264_P	0.551	0.82
43_A	220_D	0.550	0.82
228_E	235_E	0.550	0.82
144_I	238_V	0.550	0.82
52_T	106_R	0.550	0.82
115_T	271_A	0.549	0.82
78_G	263_E	0.548	0.82
173_G	206_M	0.546	0.81
31_T	39_A	0.545	0.81
26_R	29_E	0.544	0.81
22_R	42_L	0.542	0.81
81_P	266_R	0.542	0.81
268_A	277_A	0.540	0.81
127_V	131_D	0.540	0.81
23_E	44_C	0.539	0.81
125_R	132_G	0.535	0.80
154_G	209_A	0.532	0.80
210_D	244_G	0.528	0.79
229_T	234_G	0.528	0.79
121_R	137_P	0.527	0.79
17_L	64_I	0.525	0.79
93_L	180_T	0.524	0.79
151_H	247_L	0.523	0.79
250_V	256_M	0.523	0.79
197_S	220_D	0.522	0.78
39_A	44_C	0.520	0.78
210_D	258_V	0.519	0.78
80_T	85_V	0.519	0.78
36_T	52_T	0.516	0.78
31_T	35_D	0.516	0.78
174_V	225_I	0.515	0.78
185_Y	206_M	0.515	0.78
58_C	77_A	0.514	0.77
172_D	179_P	0.514	0.77
177_A	261_A	0.514	0.77
17_L	37_A	0.512	0.77
143_A	241_A	0.511	0.77
53_T	57_D	0.511	0.77
14_A	73_A	0.511	0.77
31_T	57_D	0.511	0.77
167_E	277_A	0.511	0.77
27_A	43_A	0.510	0.77
83_L	104_A	0.509	0.77
209_A	270_P	0.509	0.77
198_V	219_L	0.506	0.76
249_R	252_P	0.505	0.76
84_G	91_G	0.504	0.76
36_T	43_A	0.502	0.76
118_V	199_D	0.501	0.76
61_V	278_L	0.501	0.76
58_C	80_T	0.501	0.76
15_T	20_E	0.500	0.75

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pfnA	4	0.9787	100	0.121	Contact Map
3afoA	4	0.9894	100	0.168	Contact Map
2an1A	4	0.9504	100	0.326	Contact Map
1u0tA	4	0.9291	100	0.336	Contact Map
2i2cA	3	0.883	100	0.369	Contact Map
1yt5A	4	0.8688	100	0.377	Contact Map
1z0sA	4	0.8546	100	0.389	Contact Map
2qv7A	2	0.883	100	0.628	Contact Map
3s40A	3	0.8617	100	0.654	Contact Map
4werA	2	0.8582	99.9	0.675	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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