Q9HNR4 - HALSA - GREMLIN Contacts

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Q9HNR4 - tRNA pseudouridine synthase Pus10

UniProt:	Q9HNR4	Sequences: MTILEDARAVLAETPVCDACLGRCFAERSFGLSNAERGRALRTAVALADDEPYEEPEEPCWVCEGASGRFDEFADLVVDAVADASFDTYQVGTQAPPLVEENEAMLRDLAGLAEDAGEPFKSECNREVGKRVGDRTGTEVDFGRPDVLAVIDVEAETVDVTVNSAFVYGRYRKLERGIPQTKWPCSDCNGSGTLVDSPCPHCDGTGFLYPESVEQLTAPPVVDAMGGTEASFHGAGREDIDALMLGTGRPFVIEVAEPQDRHPDADALADAINDFADGKAEVEGVAVAGYEMVERVKELDARKRYRADVEFDAPVGDDDLRDAIDELDGATIEQETPNRVDHRRAHLVRERDVYDITADREDDTHATVEIEGEGGLYIKELVSSDDGRTNPSLAGLLGVGAVVTALDVVAVAGETEAFEDTEHLP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	425 (384)
Sequences:	396 (302)
Seq/√Len:	15.4

HALSA - Q9HNR4
SULSO - Q97ZE6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
272_I	282_V	5.942	1.00
372_G	378_I	4.097	1.00
227_G	255_V	3.920	1.00
172_R	281_E	3.817	1.00
335_E	346_H	3.460	0.99
185_C	192_G	3.087	0.98
362_D	365_H	2.947	0.98
306_R	367_T	2.894	0.98
60_C	63_C	2.792	0.97
170_R	250_P	2.741	0.97
311_F	366_A	2.662	0.96
221_V	253_I	2.541	0.95
132_V	136_T	2.441	0.93
17_C	20_C	2.355	0.92
368_V	393_L	2.318	0.91
228_T	257_E	2.273	0.91
385_D	388_R	2.214	0.89
225_M	263_P	2.192	0.89
183_W	343_R	2.170	0.88
165_A	225_M	2.166	0.88
380_E	388_R	2.133	0.87
78_V	135_R	2.056	0.85
377_Y	380_E	2.050	0.85
126_R	130_K	2.041	0.85
312_D	400_G	2.037	0.85
390_N	395_G	2.024	0.84
380_E	406_L	1.986	0.83
380_E	389_T	1.955	0.82
377_Y	406_L	1.899	0.80
339_R	349_R	1.893	0.80
237_R	339_R	1.892	0.80
251_F	340_V	1.891	0.80
237_R	380_E	1.888	0.80
77_V	149_A	1.880	0.80
232_F	251_F	1.856	0.79
388_R	406_L	1.855	0.79
302_R	371_E	1.826	0.78
306_R	369_E	1.799	0.76
380_E	408_V	1.787	0.76
237_R	303_K	1.783	0.76
237_R	377_Y	1.766	0.75
218_A	230_A	1.732	0.74
339_R	406_L	1.724	0.73
241_D	339_R	1.723	0.73
349_R	406_L	1.715	0.73
303_K	339_R	1.697	0.72
380_E	385_D	1.659	0.70
237_R	241_D	1.658	0.70
19_A	67_S	1.652	0.70
311_F	401_A	1.643	0.70
237_R	406_L	1.634	0.69
336_T	406_L	1.632	0.69
241_D	406_L	1.632	0.69
377_Y	408_V	1.630	0.69
385_D	406_L	1.623	0.69
237_R	305_Y	1.619	0.68
67_S	411_V	1.610	0.68
182_K	402_V	1.602	0.67
241_D	336_T	1.599	0.67
242_A	403_V	1.598	0.67
241_D	305_Y	1.582	0.66
340_V	344_R	1.557	0.65
379_K	406_L	1.556	0.65
288_A	292_M	1.555	0.65
178_I	346_H	1.549	0.65
336_T	339_R	1.538	0.64
40_A	43_T	1.530	0.64
336_T	340_V	1.518	0.63
241_D	349_R	1.518	0.63
312_D	394_A	1.516	0.63
305_Y	334_Q	1.513	0.63
237_R	408_V	1.509	0.63
69_R	72_E	1.506	0.63
22_G	38_G	1.501	0.62
181_T	234_G	1.491	0.62
339_R	408_V	1.484	0.61
37_R	129_G	1.482	0.61
258_P	297_K	1.461	0.60
90_Q	148_L	1.456	0.60
237_R	349_R	1.455	0.60
183_W	215_Q	1.449	0.59
242_A	301_A	1.440	0.59
305_Y	377_Y	1.435	0.59
241_D	303_K	1.434	0.59
305_Y	380_E	1.429	0.58
388_R	408_V	1.429	0.58
183_W	342_H	1.415	0.58
383_S	404_T	1.409	0.57
158_V	320_L	1.403	0.57
10_V	24_C	1.391	0.56
334_Q	349_R	1.387	0.56
303_K	379_K	1.383	0.56
185_C	190_G	1.377	0.55
237_R	334_Q	1.372	0.55
88_T	139_E	1.363	0.55
389_T	406_L	1.361	0.55
339_R	377_Y	1.361	0.55
17_C	23_R	1.358	0.54
303_K	406_L	1.354	0.54
309_V	401_A	1.353	0.54
236_G	249_R	1.352	0.54
323_A	403_V	1.348	0.54
311_F	315_V	1.346	0.54
306_R	370_I	1.341	0.53
182_K	214_E	1.340	0.53
241_D	337_P	1.338	0.53
41_L	47_L	1.337	0.53
237_R	336_T	1.327	0.53
118_E	123_E	1.322	0.52
79_D	82_A	1.320	0.52
389_T	408_V	1.315	0.52
291_E	351_R	1.307	0.51
268_L	271_A	1.300	0.51
383_S	403_V	1.300	0.51
377_Y	388_R	1.294	0.51
238_E	375_G	1.291	0.51
244_M	408_V	1.289	0.50
376_L	383_S	1.287	0.50
179_P	365_H	1.286	0.50
312_D	370_I	1.285	0.50
22_G	37_R	1.266	0.49
304_R	369_E	1.255	0.49
377_Y	389_T	1.254	0.48
60_C	65_G	1.254	0.48
303_K	349_R	1.249	0.48
190_G	209_Y	1.243	0.48
385_D	408_V	1.235	0.47
349_R	408_V	1.233	0.47
247_T	410_A	1.229	0.47
241_D	408_V	1.227	0.47
349_R	377_Y	1.227	0.47
216_L	268_L	1.222	0.47
336_T	377_Y	1.221	0.47
18_D	21_L	1.220	0.47
303_K	408_V	1.220	0.47
89_Y	133_G	1.217	0.46
336_T	349_R	1.211	0.46
99_V	120_F	1.210	0.46
192_G	234_G	1.210	0.46
307_A	373_E	1.207	0.46
93_T	125_N	1.204	0.46
244_M	336_T	1.203	0.46
252_V	351_R	1.202	0.45
375_G	379_K	1.197	0.45
169_G	251_F	1.196	0.45
122_S	125_N	1.195	0.45
341_D	403_V	1.194	0.45
209_Y	297_K	1.193	0.45
162_V	234_G	1.182	0.44
305_Y	339_R	1.179	0.44
307_A	378_I	1.177	0.44
167_V	287_V	1.177	0.44
136_T	223_D	1.174	0.44
244_M	406_L	1.166	0.43
23_R	60_C	1.166	0.43
336_T	408_V	1.165	0.43
334_Q	377_Y	1.162	0.43
238_E	303_K	1.153	0.43
241_D	380_E	1.151	0.43
214_E	218_A	1.150	0.43
239_D	375_G	1.150	0.43
287_V	394_A	1.149	0.43
16_V	394_A	1.144	0.42
289_G	355_D	1.143	0.42
336_T	380_E	1.140	0.42
34_N	37_R	1.138	0.42
352_D	373_E	1.136	0.42
269_A	283_E	1.135	0.42
337_P	408_V	1.134	0.42
354_Y	370_I	1.131	0.42
334_Q	380_E	1.130	0.41
238_E	379_K	1.128	0.41
237_R	389_T	1.126	0.41
237_R	388_R	1.123	0.41
180_Q	344_R	1.122	0.41
339_R	380_E	1.118	0.41
183_W	349_R	1.117	0.41
242_A	349_R	1.109	0.40
305_Y	349_R	1.109	0.40
134_D	332_I	1.103	0.40
346_H	364_T	1.100	0.40
379_K	408_V	1.098	0.40
239_D	385_D	1.098	0.40
20_C	23_R	1.087	0.39
379_K	385_D	1.081	0.39
240_I	254_E	1.080	0.39
147_V	255_V	1.071	0.38
133_G	137_G	1.061	0.38
209_Y	345_A	1.060	0.38
376_L	411_V	1.060	0.38
121_K	297_K	1.059	0.38
79_D	128_V	1.058	0.38
303_K	380_E	1.055	0.37
244_M	339_R	1.049	0.37
34_N	38_G	1.049	0.37
241_D	388_R	1.048	0.37
95_A	378_I	1.048	0.37
315_V	366_A	1.047	0.37
192_G	209_Y	1.047	0.37
15_P	81_V	1.045	0.37
183_W	344_R	1.041	0.37
372_G	376_L	1.031	0.36
77_V	128_V	1.027	0.36
385_D	389_T	1.027	0.36
123_E	126_R	1.025	0.36
168_Y	296_V	1.024	0.36
132_V	143_G	1.023	0.36
241_D	377_Y	1.023	0.36
237_R	337_P	1.020	0.36
337_P	349_R	1.015	0.35
70_F	128_V	1.007	0.35
303_K	377_Y	1.003	0.35
215_Q	342_H	1.001	0.35
10_V	13_E	1.001	0.35
375_G	385_D	0.993	0.34
241_D	334_Q	0.992	0.34
32_L	73_F	0.990	0.34
305_Y	337_P	0.986	0.34
19_A	119_P	0.986	0.34
65_G	400_G	0.980	0.33
183_W	297_K	0.978	0.33
15_P	46_A	0.977	0.33
22_G	130_K	0.973	0.33
308_D	405_A	0.969	0.33
162_V	258_P	0.968	0.33
336_T	388_R	0.967	0.33
169_G	379_K	0.966	0.33
13_E	262_H	0.966	0.33
81_V	149_A	0.966	0.33
238_E	241_D	0.966	0.33
241_D	385_D	0.964	0.33
125_N	179_P	0.956	0.32
282_V	285_V	0.951	0.32
237_R	343_R	0.950	0.32
123_E	129_G	0.944	0.32
166_F	290_Y	0.943	0.32
379_K	388_R	0.940	0.31
303_K	336_T	0.939	0.31
166_F	272_I	0.938	0.31
239_D	249_R	0.937	0.31
236_G	239_D	0.937	0.31
168_Y	286_A	0.935	0.31
227_G	256_A	0.933	0.31
181_T	406_L	0.932	0.31
156_E	164_S	0.931	0.31
270_D	274_D	0.930	0.31
384_S	392_S	0.929	0.31
267_A	316_G	0.929	0.31
239_D	379_K	0.926	0.31
237_R	254_E	0.925	0.31
255_V	278_G	0.916	0.30
94_Q	384_S	0.915	0.30
305_Y	343_R	0.914	0.30
323_A	393_L	0.914	0.30
251_F	344_R	0.912	0.30
336_T	389_T	0.912	0.30
33_S	136_T	0.910	0.30
127_E	130_K	0.905	0.30
126_R	129_G	0.904	0.30
331_T	350_E	0.902	0.30
383_S	402_V	0.902	0.30
244_M	385_D	0.899	0.30
136_T	308_D	0.897	0.29
100_E	106_L	0.896	0.29
132_V	217_T	0.894	0.29
391_P	407_D	0.894	0.29
96_P	102_N	0.893	0.29
337_P	388_R	0.891	0.29
43_T	47_L	0.887	0.29
341_D	346_H	0.885	0.29
100_E	392_S	0.880	0.29
175_E	298_E	0.879	0.29
161_T	166_F	0.878	0.29
268_L	357_T	0.877	0.28
239_D	303_K	0.877	0.28
343_R	377_Y	0.872	0.28
238_E	249_R	0.871	0.28
73_F	80_A	0.871	0.28
237_R	244_M	0.869	0.28
167_V	213_V	0.868	0.28
321_R	384_S	0.868	0.28
233_H	309_V	0.864	0.28
339_R	388_R	0.862	0.28
271_A	274_D	0.860	0.28
334_Q	337_P	0.858	0.28
334_Q	339_R	0.857	0.28
242_A	334_Q	0.856	0.28
82_A	291_E	0.855	0.27
22_G	34_N	0.851	0.27
121_K	185_C	0.850	0.27
118_E	126_R	0.850	0.27
95_A	215_Q	0.849	0.27
214_E	342_H	0.846	0.27
338_N	386_D	0.842	0.27
289_G	325_D	0.837	0.27
71_D	131_R	0.833	0.26
304_R	371_E	0.832	0.26
343_R	349_R	0.831	0.26
317_D	360_R	0.830	0.26
375_G	388_R	0.828	0.26
238_E	339_R	0.827	0.26
237_R	242_A	0.824	0.26
339_R	389_T	0.822	0.26
305_Y	406_L	0.819	0.26
84_A	88_T	0.818	0.26
37_R	118_E	0.817	0.26
175_E	353_V	0.817	0.26
337_P	406_L	0.814	0.26
93_T	124_C	0.812	0.26
134_D	167_V	0.810	0.25
394_A	400_G	0.810	0.25
346_H	402_V	0.806	0.25
310_E	351_R	0.806	0.25
243_L	351_R	0.805	0.25
31_G	37_R	0.805	0.25
80_A	83_D	0.803	0.25
37_R	130_K	0.798	0.25
153_V	396_L	0.798	0.25
122_S	130_K	0.795	0.25
70_F	155_A	0.792	0.25
359_D	393_L	0.792	0.25
383_S	401_A	0.790	0.25
308_D	365_H	0.788	0.25
377_Y	385_D	0.787	0.25
172_R	283_E	0.786	0.24
174_L	278_G	0.785	0.24
42_R	45_V	0.783	0.24
308_D	373_E	0.780	0.24
176_R	245_L	0.780	0.24
103_E	123_E	0.779	0.24
170_R	340_V	0.778	0.24
22_G	118_E	0.777	0.24
375_G	406_L	0.774	0.24
42_R	47_L	0.773	0.24
215_Q	343_R	0.768	0.24
361_E	382_V	0.768	0.24
349_R	380_E	0.765	0.24
213_V	280_A	0.762	0.23
52_P	332_I	0.762	0.23
378_I	401_A	0.762	0.23
339_R	343_R	0.761	0.23
337_P	385_D	0.761	0.23
157_T	370_I	0.761	0.23
13_E	24_C	0.757	0.23
250_P	340_V	0.757	0.23
86_F	133_G	0.756	0.23
99_V	315_V	0.755	0.23
16_V	22_G	0.754	0.23
337_P	380_E	0.753	0.23
253_I	333_E	0.753	0.23
117_G	124_C	0.752	0.23
223_D	378_I	0.751	0.23
242_A	339_R	0.749	0.23
229_E	341_D	0.747	0.23
163_N	256_A	0.746	0.23
249_R	375_G	0.744	0.23
236_G	375_G	0.744	0.23
360_R	364_T	0.741	0.23
349_R	388_R	0.737	0.22
288_A	372_G	0.737	0.22
22_G	25_F	0.737	0.22
308_D	378_I	0.732	0.22
344_R	349_R	0.730	0.22
334_Q	406_L	0.730	0.22
318_D	321_R	0.730	0.22
224_A	267_A	0.729	0.22
244_M	303_K	0.728	0.22
250_P	336_T	0.724	0.22
11_L	147_V	0.723	0.22
316_G	320_L	0.722	0.22
298_E	307_A	0.720	0.22
234_G	242_A	0.719	0.22
334_Q	389_T	0.718	0.22
76_L	158_V	0.718	0.22
167_V	370_I	0.717	0.22
92_G	145_P	0.716	0.22
374_G	403_V	0.715	0.22
99_V	155_A	0.713	0.22
143_G	158_V	0.712	0.21
379_K	391_P	0.707	0.21
69_R	165_A	0.707	0.21
327_L	392_S	0.707	0.21
334_Q	343_R	0.706	0.21
169_G	181_T	0.703	0.21
181_T	237_R	0.703	0.21
267_A	357_T	0.702	0.21
238_E	406_L	0.702	0.21
266_D	269_A	0.700	0.21
140_V	221_V	0.698	0.21
242_A	377_Y	0.697	0.21
334_Q	388_R	0.697	0.21
149_A	312_D	0.694	0.21
19_A	66_A	0.692	0.21
313_A	319_D	0.692	0.21
182_K	293_V	0.689	0.21
216_L	411_V	0.687	0.21
192_G	383_S	0.685	0.20
231_S	286_A	0.685	0.20
211_E	279_K	0.684	0.20
222_V	227_G	0.684	0.20
183_W	339_R	0.683	0.20
68_G	100_E	0.682	0.20
129_G	151_I	0.679	0.20
349_R	385_D	0.676	0.20
184_P	232_F	0.672	0.20
218_A	295_R	0.671	0.20
321_R	392_S	0.671	0.20
22_G	123_E	0.669	0.20
182_K	341_D	0.668	0.20
237_R	385_D	0.667	0.20
150_V	382_V	0.667	0.20
239_D	337_P	0.664	0.20
44_A	47_L	0.662	0.20
41_L	44_A	0.661	0.20
77_V	132_V	0.659	0.20
143_G	398_G	0.659	0.20
11_L	24_C	0.657	0.19
394_A	401_A	0.657	0.19
40_A	353_V	0.657	0.19
359_D	369_E	0.653	0.19
107_R	244_M	0.652	0.19
241_D	244_M	0.650	0.19
301_A	383_S	0.647	0.19
349_R	389_T	0.645	0.19
259_Q	412_A	0.644	0.19
179_P	279_K	0.642	0.19
353_V	376_L	0.640	0.19
305_Y	408_V	0.637	0.19
235_A	286_A	0.636	0.19
176_R	246_G	0.636	0.19
103_E	218_A	0.636	0.19
297_K	370_I	0.636	0.19
22_G	33_S	0.633	0.19
361_E	369_E	0.631	0.19
320_L	370_I	0.631	0.19
317_D	321_R	0.629	0.18
123_E	127_E	0.629	0.18
305_Y	388_R	0.627	0.18
25_F	37_R	0.626	0.18
180_Q	236_G	0.625	0.18
180_Q	249_R	0.625	0.18
244_M	377_Y	0.624	0.18
268_L	273_N	0.622	0.18
75_D	221_V	0.621	0.18
228_T	357_T	0.618	0.18
179_P	234_G	0.616	0.18
273_N	408_V	0.615	0.18
320_L	358_A	0.614	0.18
313_A	348_V	0.614	0.18
40_A	47_L	0.613	0.18
272_I	362_D	0.613	0.18
44_A	316_G	0.613	0.18
169_G	239_D	0.611	0.18
181_T	377_Y	0.611	0.18
56_P	266_D	0.609	0.18
359_D	363_D	0.605	0.18
223_D	270_D	0.604	0.18
65_G	405_A	0.604	0.18
209_Y	381_L	0.604	0.18
162_V	381_L	0.604	0.18
137_G	314_P	0.603	0.18
170_R	251_F	0.603	0.18
373_E	381_L	0.602	0.18
238_E	336_T	0.601	0.18
371_E	395_G	0.592	0.17
141_D	268_L	0.589	0.17
361_E	396_L	0.588	0.17
354_Y	373_E	0.586	0.17
235_A	401_A	0.585	0.17
292_M	296_V	0.585	0.17
23_R	103_E	0.584	0.17
339_R	385_D	0.583	0.17
97_P	214_E	0.581	0.17
216_L	279_K	0.579	0.17
192_G	242_A	0.578	0.17
183_W	408_V	0.576	0.17
238_E	408_V	0.574	0.17
356_I	368_V	0.574	0.17
212_S	215_Q	0.574	0.17
134_D	226_G	0.572	0.17
345_A	386_D	0.572	0.17
237_R	379_K	0.572	0.17
103_E	411_V	0.571	0.17
175_E	279_K	0.571	0.17
301_A	403_V	0.571	0.17
304_R	412_A	0.570	0.17
241_D	379_K	0.570	0.17
255_V	296_V	0.569	0.16
165_A	361_E	0.568	0.16
241_D	389_T	0.568	0.16
87_D	213_V	0.565	0.16
232_F	253_I	0.564	0.16
306_R	409_V	0.563	0.16
136_T	139_E	0.563	0.16
244_M	349_R	0.562	0.16
243_L	334_Q	0.560	0.16
84_A	160_V	0.559	0.16
244_M	380_E	0.558	0.16
341_D	386_D	0.557	0.16
120_F	247_T	0.556	0.16
227_G	244_M	0.556	0.16
181_T	339_R	0.556	0.16
303_K	388_R	0.555	0.16
173_K	249_R	0.553	0.16
173_K	236_G	0.553	0.16
161_T	313_A	0.552	0.16
78_V	82_A	0.550	0.16
65_G	410_A	0.550	0.16
368_V	394_A	0.547	0.16
217_T	282_V	0.546	0.16
254_E	377_Y	0.545	0.16
268_L	363_D	0.545	0.16
310_E	364_T	0.544	0.16
364_T	409_V	0.543	0.16
347_L	382_V	0.543	0.16
271_A	317_D	0.543	0.16
38_G	123_E	0.542	0.16
125_N	192_G	0.542	0.16
56_P	338_N	0.540	0.16
238_E	349_R	0.540	0.16
8_R	90_Q	0.539	0.16
393_L	403_V	0.539	0.16
211_E	296_V	0.539	0.16
87_D	262_H	0.539	0.16
52_P	128_V	0.537	0.16
308_D	366_A	0.536	0.15
14_T	42_R	0.536	0.15
314_P	364_T	0.536	0.15
132_V	287_V	0.533	0.15
242_A	406_L	0.532	0.15
336_T	341_D	0.528	0.15
167_V	300_D	0.527	0.15
244_M	347_L	0.526	0.15
65_G	341_D	0.522	0.15
38_G	130_K	0.522	0.15
277_D	288_A	0.521	0.15
183_W	377_Y	0.521	0.15
126_R	146_D	0.521	0.15
168_Y	288_A	0.520	0.15
182_K	218_A	0.519	0.15
259_Q	263_P	0.517	0.15
242_A	305_Y	0.517	0.15
119_P	151_I	0.517	0.15
375_G	408_V	0.516	0.15
380_E	383_S	0.516	0.15
81_V	135_R	0.516	0.15
186_S	208_L	0.515	0.15
134_D	147_V	0.514	0.15
95_A	370_I	0.513	0.15
21_L	38_G	0.513	0.15
266_D	382_V	0.512	0.15
175_E	307_A	0.512	0.15
336_T	379_K	0.511	0.15
239_D	406_L	0.511	0.15
231_S	235_A	0.511	0.15
181_T	408_V	0.510	0.15
9_A	12_A	0.510	0.15
305_Y	336_T	0.509	0.15
335_E	384_S	0.508	0.15
273_N	340_V	0.508	0.15
36_E	47_L	0.507	0.15
55_E	80_A	0.506	0.15
96_P	358_A	0.506	0.15
82_A	282_V	0.504	0.15
331_T	352_D	0.504	0.15
31_G	34_N	0.504	0.15
405_A	413_G	0.504	0.15
251_F	375_G	0.503	0.15
209_Y	233_H	0.503	0.15
301_A	374_G	0.503	0.15
90_Q	351_R	0.503	0.15
254_E	334_Q	0.503	0.15
312_D	364_T	0.502	0.15
178_I	209_Y	0.501	0.14
74_A	242_A	0.500	0.14
66_A	259_Q	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2v9kA	1	0.9176	100	0.27	Contact Map
2ausC	1	0.4071	99	0.913	Contact Map
2apoA	1	0.4047	99	0.914	Contact Map
1k8wA	1	0.3929	98.8	0.921	Contact Map
1r3eA	1	0.3906	98.7	0.923	Contact Map
3u28A	1	0.5035	98.7	0.923	Contact Map
1sgvA	1	0.3671	96	0.953	Contact Map
1dj0A	2	0.5059	88.7	0.964	Contact Map
1vs3A	2	0.5082	83.2	0.967	Contact Map
2dirA	1	0.2259	43.6	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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