SYH - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SYH - Histidine--tRNA ligase

UniProt:	Q9HNP5	Sequences: MYDRLKGFRDFYPAEMGPRRAAIDAIEDAAASYGFREVGTPAMERTEMYVDKSGAEIVDELYSFTDQGGRDVALTPELTPTVARMVVAKQQALSKPIKWYSSRPFWRYEEPQQGRFREFYQTNLDIFGTSDPRADAEVLAVAADGLTSLGLTGADFEFRVSHRDILGGLLAAFDATVDTEAAIRTVDKREKIERAAYLDDLAAAGLSYDQAEQFDDLLDGDDLDALVSFAGTDRVRDAVANLRNVLDAAETLGVRQYCDVSLTTARGLDYYTGVVFECFDSTGDVGRAVFGGGRYDDLIERFGGQPTPAVGVAPGHATLNLLLENAGVLPDDEFTPDYYVLQVGDTDAEAADVASALRERGNRVDTDITGRSFGAQMNYADNVGADTVVIVGEQDLADGNVTIKNMASGEQTTAPIAAFPGAHDAPRVEDFA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	432 (407)
Sequences:	7918 (5245)
Seq/√Len:	260.0

ECOLI - SYH SYP
BACSU - SYH HISZ SYP
HALSA - SYH
SULSO - SYH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
400_N	413_T	3.682	1.00
28_D	148_S	3.259	1.00
412_T	422_A	3.243	1.00
300_E	306_P	3.108	1.00
159_R	261_S	3.056	1.00
250_E	256_Q	2.963	1.00
405_N	408_S	2.928	1.00
403_I	422_A	2.922	1.00
101_S	123_N	2.880	1.00
147_T	156_F	2.789	1.00
65_T	69_G	2.602	1.00
352_D	356_A	2.596	1.00
349_E	352_D	2.506	1.00
415_P	418_A	2.461	1.00
186_V	189_R	2.451	1.00
398_D	413_T	2.444	1.00
418_A	421_G	2.399	1.00
268_L	271_Y	2.390	1.00
400_N	415_P	2.336	1.00
304_G	308_P	2.295	1.00
227_V	243_R	2.255	1.00
29_A	148_S	2.222	1.00
65_T	71_D	2.209	1.00
25_A	148_S	2.206	1.00
402_T	411_Q	2.166	1.00
30_A	122_T	2.164	1.00
388_V	406_M	2.153	1.00
394_Q	398_D	2.129	1.00
354_A	364_V	2.129	1.00
329_L	332_D	2.117	1.00
267_G	271_Y	2.088	1.00
337_D	363_R	2.087	1.00
20_R	23_I	2.075	1.00
27_E	37_E	2.034	1.00
26_I	145_G	2.028	1.00
340_V	354_A	2.004	1.00
393_E	397_A	1.979	1.00
271_Y	274_V	1.966	1.00
24_D	28_D	1.935	1.00
338_Y	362_N	1.919	1.00
46_T	50_V	1.916	1.00
418_A	422_A	1.891	1.00
8_F	43_M	1.890	1.00
372_S	375_A	1.874	1.00
15_E	324_E	1.844	1.00
187_D	190_E	1.841	1.00
349_E	396_L	1.836	1.00
224_D	228_S	1.819	1.00
128_G	134_A	1.796	1.00
267_G	270_Y	1.795	1.00
168_G	231_G	1.795	1.00
63_S	71_D	1.758	1.00
387_T	403_I	1.745	1.00
66_D	70_R	1.729	1.00
32_S	144_D	1.729	1.00
128_G	133_R	1.710	1.00
20_R	37_E	1.710	1.00
33_Y	144_D	1.706	1.00
124_L	138_V	1.695	1.00
21_A	25_A	1.682	1.00
250_E	255_R	1.680	1.00
38_V	85_M	1.679	1.00
142_A	278_C	1.677	1.00
242_L	260_V	1.669	1.00
337_D	362_N	1.661	1.00
136_A	248_A	1.654	1.00
140_A	144_D	1.652	1.00
31_A	100_Y	1.607	1.00
206_L	211_A	1.605	1.00
32_S	148_S	1.600	1.00
377_M	390_I	1.592	1.00
18_P	324_E	1.570	1.00
354_A	366_T	1.569	1.00
183_I	191_K	1.568	1.00
144_D	355_S	1.561	1.00
22_A	320_N	1.546	1.00
26_I	316_H	1.542	1.00
38_V	82_V	1.532	1.00
394_Q	397_A	1.516	1.00
28_D	32_S	1.513	1.00
387_T	423_H	1.507	1.00
243_R	247_D	1.493	1.00
284_D	287_R	1.491	1.00
42_A	103_R	1.489	1.00
348_A	352_D	1.480	1.00
356_A	416_I	1.475	1.00
389_V	401_V	1.466	1.00
293_G	297_D	1.466	1.00
175_A	229_F	1.460	1.00
120_Y	317_A	1.455	1.00
157_E	259_D	1.445	1.00
224_D	227_V	1.444	1.00
174_D	178_D	1.435	1.00
136_A	140_A	1.435	1.00
35_F	98_K	1.434	1.00
213_Q	216_D	1.433	1.00
126_I	134_A	1.410	1.00
246_L	250_E	1.408	1.00
209_D	213_Q	1.408	1.00
392_G	395_D	1.403	1.00
247_D	251_T	1.400	1.00
143_A	147_T	1.399	1.00
272_T	277_E	1.387	1.00
75_T	103_R	1.386	1.00
240_A	244_N	1.377	1.00
46_T	73_A	1.375	1.00
237_D	240_A	1.371	1.00
403_I	414_A	1.370	1.00
373_F	377_M	1.365	1.00
244_N	248_A	1.362	1.00
356_A	359_E	1.361	1.00
104_P	118_E	1.360	1.00
51_D	87_V	1.359	1.00
324_E	333_E	1.359	1.00
78_L	101_S	1.353	1.00
271_Y	275_V	1.350	1.00
168_G	238_A	1.345	1.00
46_T	71_D	1.331	1.00
304_G	307_T	1.325	1.00
354_A	358_R	1.325	1.00
344_G	347_D	1.324	1.00
42_A	106_W	1.320	1.00
339_Y	380_A	1.315	1.00
283_G	286_G	1.313	1.00
78_L	123_N	1.296	1.00
20_R	27_E	1.295	1.00
402_T	413_T	1.290	1.00
387_T	405_N	1.290	1.00
157_E	281_S	1.289	1.00
124_L	141_V	1.285	1.00
342_Q	350_A	1.278	1.00
140_A	252_L	1.277	1.00
419_F	423_H	1.277	1.00
293_G	309_A	1.272	1.00
188_K	191_K	1.271	1.00
83_A	299_I	1.269	1.00
5_L	43_M	1.260	1.00
5_L	8_F	1.244	1.00
142_A	290_F	1.244	1.00
193_E	196_A	1.214	1.00
98_K	365_D	1.212	1.00
20_R	31_A	1.207	1.00
266_R	271_Y	1.205	1.00
268_L	275_V	1.204	1.00
271_Y	277_E	1.204	1.00
18_P	320_N	1.203	1.00
212_E	216_D	1.202	1.00
20_R	24_D	1.197	1.00
206_L	210_Q	1.195	1.00
272_T	276_F	1.181	1.00
247_D	250_E	1.181	1.00
203_A	206_L	1.181	1.00
159_R	259_D	1.180	1.00
205_G	210_Q	1.180	1.00
355_S	359_E	1.179	1.00
5_L	72_V	1.173	1.00
274_V	277_E	1.171	1.00
401_V	416_I	1.169	1.00
231_G	238_A	1.157	1.00
222_D	227_V	1.154	1.00
165_I	231_G	1.153	1.00
371_R	375_A	1.153	1.00
46_T	63_S	1.142	1.00
143_A	158_F	1.141	1.00
211_A	215_D	1.139	1.00
14_A	17_G	1.138	1.00
207_S	210_Q	1.138	1.00
206_L	215_D	1.137	1.00
271_Y	276_F	1.132	1.00
349_E	416_I	1.131	1.00
19_R	317_A	1.127	1.00
346_T	393_E	1.126	1.00
244_N	247_D	1.121	1.00
205_G	211_A	1.119	1.00
208_Y	211_A	1.118	1.00
23_I	39_G	1.108	1.00
270_Y	277_E	1.108	1.00
192_I	198_L	1.103	1.00
338_Y	357_L	1.103	1.00
338_Y	364_V	1.102	1.00
67_Q	108_Y	1.100	1.00
78_L	105_F	1.099	1.00
191_K	194_R	1.097	1.00
225_A	228_S	1.092	1.00
342_Q	376_Q	1.091	1.00
16_M	20_R	1.088	1.00
265_A	268_L	1.084	1.00
246_L	260_V	1.075	1.00
33_Y	141_V	1.064	1.00
394_Q	413_T	1.061	1.00
266_R	270_Y	1.061	1.00
70_R	108_Y	1.055	1.00
404_K	411_Q	1.055	1.00
176_T	179_T	1.055	1.00
331_D	378_N	1.054	1.00
356_A	360_R	1.045	1.00
266_R	269_D	1.045	1.00
165_I	168_G	1.045	1.00
19_R	120_Y	1.044	1.00
403_I	419_F	1.044	1.00
360_R	420_P	1.043	1.00
338_Y	389_V	1.041	1.00
25_A	149_L	1.040	1.00
26_I	122_T	1.039	1.00
263_T	268_L	1.038	1.00
356_A	420_P	1.033	1.00
281_S	284_D	1.033	1.00
340_V	350_A	1.032	1.00
240_A	243_R	1.030	1.00
17_G	31_A	1.030	1.00
239_V	242_L	1.029	1.00
83_A	127_F	1.028	1.00
270_Y	275_V	1.028	1.00
35_F	126_I	1.028	1.00
42_A	118_E	1.026	1.00
43_M	74_L	1.024	1.00
37_E	100_Y	1.021	1.00
223_L	227_V	1.018	1.00
131_D	309_A	1.017	1.00
386_D	405_N	1.014	1.00
190_E	193_E	1.011	1.00
251_T	348_A	1.009	1.00
190_E	206_L	1.008	1.00
242_L	245_V	0.995	1.00
134_A	137_E	0.995	1.00
399_G	417_A	0.994	1.00
116_F	317_A	0.993	1.00
23_I	27_E	0.989	1.00
344_G	393_E	0.985	1.00
6_K	110_E	0.982	1.00
207_S	211_A	0.977	1.00
273_G	276_F	0.977	1.00
86_V	99_W	0.973	1.00
341_L	373_F	0.972	1.00
246_L	256_Q	0.971	1.00
351_A	355_S	0.970	1.00
248_A	255_R	0.968	1.00
239_V	243_R	0.968	1.00
27_E	102_S	0.967	1.00
12_Y	85_M	0.964	1.00
122_T	316_H	0.964	1.00
247_D	348_A	0.963	1.00
377_M	381_D	0.962	1.00
263_T	266_R	0.961	1.00
263_T	271_Y	0.958	1.00
305_Q	308_P	0.952	1.00
42_A	104_P	0.951	1.00
212_E	215_D	0.950	1.00
26_I	30_A	0.948	1.00
405_N	410_E	0.945	1.00
129_T	303_G	0.943	1.00
404_K	409_G	0.941	1.00
11_F	19_R	0.941	1.00
33_Y	98_K	0.939	1.00
144_D	147_T	0.932	1.00
199_D	203_A	0.924	1.00
251_T	254_V	0.924	1.00
342_Q	366_T	0.921	1.00
139_L	158_F	0.921	1.00
50_V	71_D	0.919	1.00
75_T	78_L	0.918	1.00
263_T	270_Y	0.918	1.00
159_R	279_F	0.917	1.00
223_L	226_L	0.914	1.00
341_L	388_V	0.912	1.00
273_G	277_E	0.910	1.00
265_A	277_E	0.910	1.00
349_E	391_V	0.904	1.00
40_T	81_T	0.900	1.00
98_K	124_L	0.899	1.00
119_F	313_A	0.898	1.00
33_Y	137_E	0.897	1.00
241_N	245_V	0.893	1.00
414_A	419_F	0.892	1.00
66_D	69_G	0.891	1.00
340_V	353_V	0.890	1.00
167_G	171_A	0.889	1.00
248_A	252_L	0.888	1.00
43_M	72_V	0.877	1.00
211_A	214_F	0.877	1.00
144_D	359_E	0.876	1.00
401_V	414_A	0.874	1.00
264_T	275_V	0.873	1.00
294_R	298_L	0.869	1.00
24_D	27_E	0.868	1.00
143_A	255_R	0.867	1.00
143_A	156_F	0.866	1.00
5_L	45_R	0.865	1.00
127_F	299_I	0.862	1.00
17_G	36_R	0.861	1.00
260_V	263_T	0.860	1.00
138_V	310_V	0.859	1.00
416_I	420_P	0.857	1.00
63_S	73_A	0.855	1.00
274_V	278_C	0.854	1.00
249_A	255_R	0.852	0.99
261_S	268_L	0.850	0.99
283_G	287_R	0.849	0.99
9_R	317_A	0.848	0.99
191_K	196_A	0.843	0.99
261_S	267_G	0.840	0.99
202_A	205_G	0.840	0.99
82_V	123_N	0.838	0.99
165_I	238_A	0.837	0.99
268_L	274_V	0.836	0.99
367_D	371_R	0.835	0.99
343_V	373_F	0.834	0.99
9_R	15_E	0.834	0.99
40_T	82_V	0.833	0.99
388_V	411_Q	0.833	0.99
261_S	264_T	0.830	0.99
25_A	29_A	0.829	0.99
281_S	287_R	0.828	0.99
401_V	419_F	0.827	0.99
25_A	28_D	0.827	0.99
24_D	31_A	0.824	0.99
187_D	206_L	0.823	0.99
186_V	190_E	0.819	0.99
297_D	300_E	0.819	0.99
270_Y	274_V	0.818	0.99
208_Y	214_F	0.817	0.99
381_D	406_M	0.816	0.99
210_Q	213_Q	0.815	0.99
264_T	271_Y	0.815	0.99
47_E	50_V	0.814	0.99
275_V	278_C	0.813	0.99
389_V	403_I	0.811	0.99
204_A	207_S	0.811	0.99
27_E	100_Y	0.810	0.99
222_D	225_A	0.808	0.99
78_L	103_R	0.806	0.99
375_A	378_N	0.806	0.99
243_R	246_L	0.806	0.99
180_E	195_A	0.806	0.99
381_D	404_K	0.804	0.99
145_G	314_P	0.803	0.99
206_L	209_D	0.791	0.99
113_Q	116_F	0.790	0.99
365_D	385_A	0.788	0.99
265_A	271_Y	0.787	0.99
415_P	419_F	0.786	0.99
261_S	271_Y	0.785	0.99
21_A	363_R	0.784	0.99
264_T	268_L	0.783	0.99
272_T	275_V	0.778	0.99
64_F	72_V	0.778	0.99
315_G	318_T	0.773	0.99
362_N	423_H	0.772	0.99
203_A	207_S	0.767	0.99
43_M	62_Y	0.765	0.99
202_A	251_T	0.763	0.99
414_A	422_A	0.763	0.99
260_V	264_T	0.763	0.99
339_Y	385_A	0.763	0.99
180_E	183_I	0.762	0.99
68_G	108_Y	0.762	0.99
209_D	215_D	0.760	0.99
205_G	209_D	0.760	0.99
263_T	267_G	0.759	0.99
251_T	255_R	0.758	0.99
386_D	407_A	0.757	0.99
27_E	31_A	0.755	0.99
162_H	168_G	0.755	0.99
29_A	144_D	0.754	0.99
250_E	254_V	0.751	0.99
321_L	324_E	0.749	0.99
271_Y	278_C	0.749	0.99
202_A	207_S	0.746	0.99
381_D	388_V	0.746	0.99
265_A	270_Y	0.741	0.99
32_S	362_N	0.736	0.99
205_G	215_D	0.734	0.98
389_V	419_F	0.729	0.98
345_D	351_A	0.729	0.98
86_V	90_Q	0.728	0.98
268_L	277_E	0.728	0.98
352_D	416_I	0.728	0.98
247_D	255_R	0.724	0.98
16_M	19_R	0.724	0.98
202_A	208_Y	0.722	0.98
391_V	401_V	0.722	0.98
342_Q	345_D	0.721	0.98
43_M	64_F	0.720	0.98
249_A	256_Q	0.720	0.98
203_A	211_A	0.720	0.98
98_K	137_E	0.720	0.98
241_N	244_N	0.719	0.98
29_A	145_G	0.718	0.98
248_A	251_T	0.715	0.98
243_R	250_E	0.714	0.98
102_S	122_T	0.712	0.98
200_D	203_A	0.712	0.98
11_F	15_E	0.709	0.98
8_F	40_T	0.706	0.98
353_V	356_A	0.706	0.98
177_V	180_E	0.704	0.98
261_S	266_R	0.702	0.98
412_T	418_A	0.701	0.98
203_A	214_F	0.700	0.98
16_M	39_G	0.699	0.98
210_Q	215_D	0.697	0.98
265_A	275_V	0.696	0.98
261_S	265_A	0.695	0.98
267_G	277_E	0.694	0.98
42_A	74_L	0.693	0.98
144_D	148_S	0.690	0.98
161_S	166_L	0.688	0.98
23_I	37_E	0.687	0.98
205_G	212_E	0.685	0.98
265_A	269_D	0.684	0.98
82_V	99_W	0.683	0.98
358_R	364_V	0.682	0.98
263_T	275_V	0.681	0.98
106_W	118_E	0.680	0.98
262_L	266_R	0.679	0.98
194_R	198_L	0.679	0.98
156_F	278_C	0.678	0.97
273_G	278_C	0.676	0.97
249_A	254_V	0.676	0.97
327_G	330_P	0.674	0.97
55_A	73_A	0.674	0.97
208_Y	212_E	0.673	0.97
4_R	88_A	0.673	0.97
158_F	278_C	0.673	0.97
245_V	248_A	0.670	0.97
189_R	192_I	0.666	0.97
208_Y	213_Q	0.666	0.97
9_R	116_F	0.665	0.97
115_R	315_G	0.665	0.97
139_L	143_A	0.661	0.97
209_D	212_E	0.660	0.97
303_G	307_T	0.659	0.97
23_I	316_H	0.657	0.97
272_T	278_C	0.656	0.97
205_G	214_F	0.655	0.97
269_D	277_E	0.655	0.97
264_T	270_Y	0.654	0.97
374_G	378_N	0.654	0.97
90_Q	97_I	0.652	0.97
340_V	389_V	0.651	0.97
146_L	319_L	0.651	0.97
267_G	275_V	0.649	0.97
159_R	162_H	0.648	0.97
137_E	358_R	0.647	0.97
136_A	252_L	0.645	0.97
205_G	208_Y	0.645	0.97
180_E	194_R	0.643	0.97
347_D	393_E	0.641	0.96
264_T	277_E	0.641	0.96
261_S	270_Y	0.640	0.96
183_I	194_R	0.640	0.96
57_I	60_E	0.639	0.96
262_L	268_L	0.639	0.96
130_S	308_P	0.637	0.96
373_F	390_I	0.634	0.96
23_I	102_S	0.634	0.96
203_A	208_Y	0.633	0.96
299_I	307_T	0.633	0.96
33_Y	358_R	0.632	0.96
32_S	358_R	0.631	0.96
152_T	326_A	0.629	0.96
187_D	211_A	0.629	0.96
356_A	417_A	0.628	0.96
290_F	314_P	0.627	0.96
340_V	364_V	0.627	0.96
242_L	246_L	0.626	0.96
246_L	249_A	0.624	0.96
244_N	250_E	0.620	0.96
84_R	88_A	0.619	0.96
223_L	228_S	0.619	0.96
270_Y	273_G	0.616	0.96
280_D	283_G	0.614	0.96
182_A	185_T	0.613	0.95
146_L	156_F	0.613	0.95
203_A	215_D	0.613	0.95
339_Y	342_Q	0.612	0.95
151_L	322_L	0.610	0.95
38_V	99_W	0.609	0.95
196_A	199_D	0.608	0.95
265_A	274_V	0.607	0.95
21_A	24_D	0.606	0.95
146_L	290_F	0.606	0.95
338_Y	419_F	0.606	0.95
31_A	363_R	0.605	0.95
156_F	161_S	0.604	0.95
87_V	302_F	0.604	0.95
270_Y	278_C	0.603	0.95
378_N	382_N	0.603	0.95
104_P	120_Y	0.601	0.95
328_V	331_D	0.600	0.95
19_R	39_G	0.599	0.95
119_F	318_T	0.598	0.95
181_A	194_R	0.597	0.95
408_S	412_T	0.596	0.95
261_S	273_G	0.595	0.95
340_V	366_T	0.594	0.95
157_E	161_S	0.594	0.95
131_D	293_G	0.594	0.95
183_I	186_V	0.593	0.95
33_Y	138_V	0.593	0.95
161_S	165_I	0.592	0.95
107_R	119_F	0.591	0.95
270_Y	276_F	0.591	0.95
397_A	400_N	0.589	0.94
341_L	376_Q	0.589	0.94
86_V	127_F	0.587	0.94
199_D	202_A	0.586	0.94
135_D	138_V	0.586	0.94
269_D	275_V	0.585	0.94
350_A	366_T	0.584	0.94
203_A	210_Q	0.584	0.94
164_D	241_N	0.583	0.94
302_F	305_Q	0.582	0.94
86_V	95_K	0.580	0.94
39_G	103_R	0.580	0.94
35_F	137_E	0.580	0.94
378_N	381_D	0.580	0.94
162_H	166_L	0.579	0.94
109_E	318_T	0.579	0.94
237_D	241_N	0.578	0.94
237_D	244_N	0.576	0.94
248_A	256_Q	0.576	0.94
260_V	271_Y	0.575	0.94
109_E	315_G	0.574	0.94
173_F	177_V	0.574	0.94
139_L	288_A	0.572	0.94
210_Q	214_F	0.571	0.93
260_V	268_L	0.570	0.93
239_V	246_L	0.570	0.93
17_G	363_R	0.568	0.93
190_E	195_A	0.568	0.93
161_S	164_D	0.568	0.93
281_S	286_G	0.567	0.93
60_E	63_S	0.563	0.93
337_D	386_D	0.562	0.93
21_A	331_D	0.560	0.93
266_R	275_V	0.559	0.93
260_V	267_G	0.559	0.93
268_L	272_T	0.559	0.93
168_G	171_A	0.558	0.93
280_D	284_D	0.558	0.93
124_L	312_V	0.557	0.93
194_R	203_A	0.557	0.93
183_I	195_A	0.556	0.93
191_K	195_A	0.556	0.93
336_P	363_R	0.556	0.93
77_E	80_P	0.556	0.93
29_A	33_Y	0.555	0.92
262_L	271_Y	0.554	0.92
352_D	355_S	0.552	0.92
207_S	215_D	0.550	0.92
179_T	182_A	0.548	0.92
29_A	32_S	0.548	0.92
136_A	139_L	0.547	0.92
405_N	409_G	0.546	0.92
208_Y	215_D	0.543	0.92
163_R	166_L	0.542	0.92
323_L	327_G	0.541	0.92
261_S	275_V	0.540	0.91
266_R	273_G	0.540	0.91
232_T	240_A	0.538	0.91
262_L	270_Y	0.537	0.91
245_V	249_A	0.537	0.91
193_E	197_Y	0.537	0.91
263_T	277_E	0.536	0.91
57_I	61_L	0.536	0.91
28_D	361_G	0.534	0.91
84_R	87_V	0.534	0.91
337_D	385_A	0.532	0.91
282_T	286_G	0.532	0.91
159_R	163_R	0.532	0.91
25_A	145_G	0.531	0.91
278_C	290_F	0.531	0.91
109_E	115_R	0.530	0.91
241_N	273_G	0.530	0.91
10_D	41_P	0.530	0.91
250_E	253_G	0.528	0.91
268_L	278_C	0.526	0.90
83_A	301_R	0.526	0.90
156_F	162_H	0.525	0.90
140_A	143_A	0.522	0.90
189_R	193_E	0.521	0.90
177_V	195_A	0.521	0.90
190_E	194_R	0.521	0.90
156_F	168_G	0.521	0.90
353_V	391_V	0.520	0.90
147_T	152_T	0.519	0.90
249_A	253_G	0.518	0.90
377_M	406_M	0.515	0.89
149_L	319_L	0.515	0.89
338_Y	387_T	0.512	0.89
269_D	272_T	0.512	0.89
216_D	222_D	0.512	0.89
268_L	273_G	0.510	0.89
162_H	241_N	0.508	0.89
198_L	212_E	0.508	0.89
161_S	168_G	0.508	0.89
126_I	138_V	0.507	0.89
377_M	388_V	0.506	0.89
204_A	208_Y	0.506	0.89
117_R	315_G	0.505	0.89
142_A	312_V	0.504	0.88
130_S	296_D	0.504	0.88
16_M	37_E	0.503	0.88
86_V	307_T	0.503	0.88
146_L	314_P	0.503	0.88
203_A	209_D	0.502	0.88
222_D	226_L	0.502	0.88
263_T	273_G	0.501	0.88
82_V	101_S	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3lc0A	2	0.9468	100	0.193	Contact Map
3netA	2	0.9514	100	0.199	Contact Map
1wu7A	2	0.9583	100	0.202	Contact Map
4phcA	2	0.9769	100	0.203	Contact Map
4g84A	2	0.9653	100	0.213	Contact Map
1httA	2	0.831	100	0.243	Contact Map
1h4vB	2	0.9167	100	0.253	Contact Map
3od1A	2	0.8634	100	0.26	Contact Map
1qe0A	2	0.8773	100	0.261	Contact Map
4e51A	2	0.9213	100	0.277	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.