GREMLIN Database
Q9HNP2 - 30S ribosomal protein S19e
UniProt: Q9HNP2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 151 (137)
Sequences: 451 (301)
Seq/√Len: 25.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
72_S97_R5.6221.00
55_S75_Y5.3421.00
53_A103_I4.7031.00
9_V13_I3.9801.00
49_W106_Q3.2631.00
114_E122_V2.6790.99
72_S94_A2.6310.99
38_G77_S2.5120.99
57_L112_L2.3470.98
95_G100_V2.2000.97
98_N102_T2.1630.97
60_V123_V2.1360.97
45_Q51_T2.1310.97
85_Y91_T2.0000.95
5_Y62_I1.9850.95
102_T105_Q1.8700.93
59_K63_D1.7850.91
21_E47_D1.7750.91
84_R90_S1.7090.90
12_L16_L1.7060.89
36_G39_R1.6530.88
16_L112_L1.6410.88
29_W33_A1.6200.87
10_D13_I1.6150.87
60_V71_L1.6010.86
78_T90_S1.5830.86
16_L130_L1.5010.82
79_T93_T1.4910.82
71_L74_A1.4580.80
113_V123_V1.3460.75
17_A51_T1.3380.74
130_L134_T1.3090.73
66_I71_L1.2820.71
3_T6_D1.2780.71
15_E137_D1.2510.69
56_L100_V1.2380.68
48_F61_A1.2350.68
8_P11_E1.2110.67
101_R121_R1.1900.65
2_A136_G1.1820.65
60_V113_V1.1800.64
26_E106_Q1.1640.63
33_A99_I1.1570.63
76_G92_T1.1450.62
49_W102_T1.1350.61
129_S133_E1.1300.61
2_A63_D1.1280.61
104_L113_V1.1220.60
56_L71_L1.0990.59
105_Q108_E1.0960.59
59_K73_E1.0940.58
111_G141_S1.0820.58
4_L21_E1.0700.57
96_S99_I1.0600.56
108_E115_Q1.0590.56
26_E102_T1.0550.56
75_Y113_V1.0320.54
122_V128_R1.0200.53
114_E124_T1.0190.53
64_G95_G1.0130.53
60_V66_I1.0110.52
4_L12_L0.9830.50
7_A137_D0.9740.50
36_G76_G0.9690.49
24_L71_L0.9680.49
120_G127_G0.9650.49
58_R121_R0.9550.48
94_A97_R0.9500.48
2_A99_I0.9480.48
12_L44_E0.9440.48
15_E18_A0.9380.47
16_L57_L0.9340.47
84_R87_V0.9270.46
59_K74_A0.9260.46
94_A118_D0.9170.46
14_D45_Q0.9070.45
3_T124_T0.9000.44
128_R132_D0.8920.44
132_D135_A0.8810.43
55_S60_V0.8790.43
3_T62_I0.8740.42
61_A132_D0.8670.42
77_S107_L0.8660.42
38_G93_T0.8640.42
23_R110_E0.8630.42
35_T43_P0.8530.41
111_G126_D0.8520.41
130_L133_E0.8500.41
97_R103_I0.8460.40
85_Y88_A0.8450.40
63_D73_E0.8390.40
2_A5_Y0.8360.40
53_A110_E0.8280.39
56_L116_Q0.8250.39
2_A139_I0.8150.38
62_I110_E0.8060.38
10_D79_T0.8050.38
68_V96_S0.7990.37
8_P116_Q0.7920.37
38_G86_V0.7830.36
3_T138_V0.7810.36
24_L109_A0.7810.36
124_T142_L0.7770.36
11_E41_L0.7590.34
48_F85_Y0.7560.34
95_G98_N0.7530.34
17_A132_D0.7460.34
16_L103_I0.7380.33
105_Q135_A0.7340.33
31_N39_R0.7290.33
55_S136_G0.7250.32
36_G47_D0.7240.32
24_L126_D0.7230.32
68_V104_L0.7230.32
48_F86_V0.7160.32
25_D28_D0.7150.32
125_G129_S0.7140.32
126_D131_L0.7120.31
38_G64_G0.7120.31
116_Q119_H0.7110.31
19_D134_T0.7070.31
61_A121_R0.7030.31
121_R127_G0.7010.31
17_A67_G0.6950.30
131_L134_T0.6930.30
33_A90_S0.6880.30
106_Q111_G0.6880.30
129_S134_T0.6850.30
111_G140_E0.6820.30
56_L103_I0.6790.29
137_D142_L0.6750.29
97_R118_D0.6720.29
6_D132_D0.6710.29
129_S132_D0.6700.29
106_Q110_E0.6670.29
66_I73_E0.6630.28
21_E45_Q0.6540.28
13_I116_Q0.6520.28
114_E125_G0.6460.27
128_R138_V0.6450.27
30_A110_E0.6450.27
71_L100_V0.6440.27
37_A79_T0.6430.27
26_E98_N0.6430.27
14_D87_V0.6400.27
11_E140_E0.6350.27
21_E50_A0.6340.27
36_G94_A0.6290.26
37_A93_T0.6280.26
13_I20_L0.6270.26
26_E49_W0.6270.26
111_G133_E0.6270.26
33_A43_P0.6270.26
64_G123_V0.6260.26
24_L106_Q0.6210.26
21_E86_V0.6210.26
6_D135_A0.6200.26
98_N116_Q0.6180.26
36_G77_S0.6110.25
104_L124_T0.6020.25
59_K66_I0.6020.25
11_E109_A0.5990.25
7_A20_L0.5960.25
60_V109_A0.5950.25
19_D22_T0.5940.24
108_E121_R0.5900.24
52_R76_G0.5890.24
26_E31_N0.5860.24
50_A102_T0.5830.24
55_S59_K0.5810.24
14_D46_S0.5800.24
109_A122_V0.5800.24
6_D23_R0.5780.24
3_T128_R0.5770.24
77_S92_T0.5710.23
59_K75_Y0.5670.23
32_Y49_W0.5670.23
95_G124_T0.5660.23
56_L70_R0.5630.23
23_R69_K0.5620.23
66_I106_Q0.5590.23
30_A106_Q0.5540.22
46_S119_H0.5450.22
69_K94_A0.5410.22
76_G107_L0.5380.22
23_R128_R0.5370.22
8_P19_D0.5350.21
5_Y28_D0.5350.21
35_T39_R0.5350.21
31_N41_L0.5310.21
121_R135_A0.5300.21
13_I124_T0.5290.21
2_A19_D0.5240.21
4_L130_L0.5240.21
101_R135_A0.5210.21
77_S132_D0.5200.21
87_V91_T0.5190.21
63_D66_I0.5180.21
16_L20_L0.5160.20
33_A98_N0.5110.20
29_W38_G0.5100.20
56_L87_V0.5080.20
10_D15_E0.5040.20
5_Y9_V0.5030.20
22_T63_D0.5010.20
39_R57_L0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bpeT 1 0.9404 100 0.097 Contact Map
4w23T 1 0.9205 100 0.1 Contact Map
3j38T 1 0.9669 100 0.1 Contact Map
3j7aY 1 0.9272 100 0.109 Contact Map
3j60T 1 0.9205 100 0.114 Contact Map
3zeyO 1 0.9603 100 0.118 Contact Map
4ujpU 1 0.9205 100 0.124 Contact Map
2v7fA 1 0.894 100 0.426 Contact Map
1bjaA 1 0.6225 96.7 0.889 Contact Map
2o0mA 1 0.0861 96.5 0.892 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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