Q9HNK6 - HALSA - GREMLIN Contacts

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Q9HNK6 - Aaa superfamily atpase

UniProt:	Q9HNK6	Sequences: MFTDRDAFAGSITLVDDDMAIDWFVDRAAADRISANPVLAFVFGDEFGVDYETARDANRPVQADPQWIDGLLEEYFDEDDEEMLDLVDVRSPAELTVSLDDIVLTDDQEAEMSKVAKAIEHRDYLATIGLNEVGKLLFVGPPGTGKTSTARGLAHQLDLPFVEVKLSMITSQYLGETAKNVEKVFEVAKRLSPCILFMDEFDFVATTRTGDEHNAIKRAVNTLLKSIDEISLVTDDVLLIGATNHPDELDAAAWRRFDEILSFPRPDEGMRADIISLVTSEVDIADFDPAALAAETSGLTGSDLRLVLREAVLDALVEDRTELTQDDLMAAISEFEDRDHLRNLDTLEDALDDTHSDHTHDDHPAPNPE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	369 (298)
Sequences:	14631 (7794)
Seq/√Len:	451.5

ECOLI - FTSH RUVB
BACSU - FTSH YJOB SP5K
HALSA - Q9HNK6 CDCH Q9HPU1 PAN1 Q9HHW2 PAN2 Q9HPV0 Q9HPG1
SULSO - Q980U9 Q97ZZ9 PAN Q97ZJ7 Q97W25 Q97V06

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
268_E	294_A	5.385	1.00
272_A	290_A	5.172	1.00
291_A	295_E	4.312	1.00
276_S	289_P	4.233	1.00
267_D	270_M	3.457	1.00
93_A	96_T	3.126	1.00
245_H	248_E	2.603	1.00
275_I	304_L	2.597	1.00
272_A	276_S	2.588	1.00
273_D	276_S	2.509	1.00
99_L	106_D	2.457	1.00
276_S	286_D	2.396	1.00
97_V	100_D	2.351	1.00
27_R	30_A	2.348	1.00
268_E	290_A	2.340	1.00
95_L	99_L	2.249	1.00
197_F	242_A	2.225	1.00
184_V	196_L	2.221	1.00
101_D	155_H	2.200	1.00
273_D	277_L	2.175	1.00
241_G	257_F	2.163	1.00
285_A	288_D	2.117	1.00
23_W	26_D	1.990	1.00
265_R	300_T	1.908	1.00
307_V	311_A	1.903	1.00
23_W	30_A	1.848	1.00
207_T	216_I	1.837	1.00
100_D	155_H	1.809	1.00
135_K	227_I	1.806	1.00
38_V	42_V	1.798	1.00
71_L	74_E	1.780	1.00
32_R	36_N	1.772	1.00
305_R	309_R	1.768	1.00
35_A	38_V	1.765	1.00
33_I	37_P	1.765	1.00
318_E	327_D	1.645	1.00
33_I	36_N	1.645	1.00
64_D	67_W	1.618	1.00
49_V	53_T	1.611	1.00
26_D	30_A	1.606	1.00
114_K	314_D	1.600	1.00
49_V	52_E	1.593	1.00
291_A	294_A	1.591	1.00
29_A	33_I	1.590	1.00
29_A	32_R	1.586	1.00
30_A	34_S	1.580	1.00
37_P	41_F	1.566	1.00
272_A	289_P	1.559	1.00
279_T	308_L	1.556	1.00
137_L	257_F	1.543	1.00
97_V	156_Q	1.538	1.00
36_N	40_A	1.534	1.00
222_T	226_S	1.490	1.00
138_F	263_F	1.488	1.00
25_V	29_A	1.471	1.00
94_E	156_Q	1.461	1.00
31_D	34_S	1.461	1.00
324_T	327_D	1.459	1.00
32_R	35_A	1.439	1.00
23_W	27_R	1.421	1.00
186_E	190_R	1.421	1.00
150_A	240_I	1.420	1.00
28_A	31_D	1.417	1.00
28_A	32_R	1.414	1.00
33_I	40_A	1.412	1.00
114_K	318_E	1.412	1.00
153_L	240_I	1.389	1.00
205_A	253_A	1.386	1.00
25_V	28_A	1.385	1.00
22_D	26_D	1.384	1.00
35_A	39_L	1.383	1.00
21_I	25_V	1.382	1.00
280_S	284_I	1.379	1.00
24_F	27_R	1.375	1.00
61_V	64_D	1.367	1.00
20_A	23_W	1.365	1.00
29_A	36_N	1.344	1.00
282_V	308_L	1.343	1.00
30_A	33_I	1.338	1.00
320_R	327_D	1.333	1.00
280_S	283_D	1.328	1.00
272_A	286_D	1.307	1.00
254_W	260_I	1.306	1.00
34_S	40_A	1.303	1.00
204_V	223_L	1.302	1.00
25_V	31_D	1.302	1.00
65_P	69_D	1.293	1.00
121_H	124_Y	1.291	1.00
309_R	313_L	1.281	1.00
177_T	180_N	1.281	1.00
36_N	43_F	1.264	1.00
37_P	40_A	1.261	1.00
103_V	277_L	1.256	1.00
278_V	281_E	1.254	1.00
85_D	190_R	1.251	1.00
268_E	293_A	1.244	1.00
36_N	39_L	1.240	1.00
106_D	270_M	1.237	1.00
33_I	39_L	1.234	1.00
68_I	72_L	1.232	1.00
275_I	292_L	1.225	1.00
67_W	71_L	1.220	1.00
160_P	191_L	1.214	1.00
295_E	311_A	1.204	1.00
23_W	34_S	1.199	1.00
63_A	71_L	1.194	1.00
47_F	51_Y	1.192	1.00
40_A	43_F	1.177	1.00
226_S	239_L	1.176	1.00
275_I	289_P	1.176	1.00
28_A	35_A	1.168	1.00
192_S	236_D	1.166	1.00
50_D	53_T	1.160	1.00
60_P	64_D	1.158	1.00
24_F	28_A	1.157	1.00
290_A	294_A	1.157	1.00
109_E	149_T	1.153	1.00
93_A	97_V	1.151	1.00
41_F	44_G	1.150	1.00
53_T	57_A	1.149	1.00
122_R	127_T	1.144	1.00
321_T	327_D	1.144	1.00
201_F	241_G	1.138	1.00
55_R	60_P	1.137	1.00
271_R	293_A	1.130	1.00
95_L	110_A	1.124	1.00
23_W	31_D	1.123	1.00
25_V	34_S	1.123	1.00
311_A	315_A	1.123	1.00
291_A	325_Q	1.119	1.00
46_E	50_D	1.114	1.00
28_A	33_I	1.114	1.00
255_R	302_S	1.113	1.00
31_D	36_N	1.113	1.00
34_S	37_P	1.109	1.00
59_R	62_Q	1.106	1.00
162_V	194_C	1.104	1.00
23_W	28_A	1.101	1.00
58_N	61_V	1.101	1.00
139_V	243_T	1.099	1.00
21_I	24_F	1.096	1.00
30_A	40_A	1.095	1.00
118_A	121_H	1.093	1.00
31_D	40_A	1.085	1.00
162_V	196_L	1.082	1.00
26_D	29_A	1.075	1.00
28_A	34_S	1.074	1.00
29_A	34_S	1.072	1.00
176_E	179_K	1.066	1.00
51_Y	54_A	1.063	1.00
71_L	75_Y	1.062	1.00
51_Y	55_R	1.059	1.00
171_S	177_T	1.041	1.00
99_L	109_E	1.033	1.00
278_V	305_R	1.023	1.00
84_L	236_D	1.022	1.00
20_A	28_A	1.018	1.00
30_A	37_P	1.017	1.00
36_N	41_F	1.011	1.00
264_P	270_M	1.007	1.00
30_A	44_G	1.005	1.00
39_L	43_F	1.002	1.00
25_V	32_R	0.997	1.00
23_W	33_I	0.994	1.00
31_D	35_A	0.993	1.00
25_V	30_A	0.992	1.00
64_D	68_I	0.988	1.00
101_D	152_G	0.988	1.00
54_A	58_N	0.984	1.00
137_L	201_F	0.977	1.00
23_W	44_G	0.972	1.00
54_A	57_A	0.971	1.00
107_D	264_P	0.971	1.00
78_E	81_E	0.963	1.00
20_A	34_S	0.953	1.00
27_R	32_R	0.946	1.00
157_L	238_L	0.945	1.00
68_I	71_L	0.942	1.00
269_G	272_A	0.941	1.00
25_V	33_I	0.940	1.00
139_V	260_I	0.938	1.00
287_F	290_A	0.938	1.00
20_A	24_F	0.935	1.00
171_S	178_A	0.934	1.00
74_E	78_E	0.933	1.00
23_W	37_P	0.921	1.00
103_V	273_D	0.917	1.00
23_W	41_F	0.916	1.00
166_L	198_M	0.914	1.00
27_R	34_S	0.911	1.00
110_A	114_K	0.908	1.00
291_A	311_A	0.908	1.00
285_A	322_E	0.906	1.00
182_E	232_L	0.902	1.00
85_D	93_A	0.895	1.00
288_D	325_Q	0.891	1.00
150_A	197_F	0.891	1.00
70_G	77_D	0.889	1.00
30_A	36_N	0.888	1.00
321_T	324_T	0.884	1.00
173_Y	179_K	0.884	1.00
279_T	284_I	0.882	1.00
288_D	291_A	0.882	1.00
31_D	37_P	0.875	1.00
251_A	254_W	0.874	1.00
106_D	110_A	0.865	1.00
34_S	38_V	0.859	1.00
22_D	28_A	0.858	1.00
59_R	63_A	0.858	1.00
162_V	188_A	0.857	1.00
28_A	36_N	0.856	1.00
21_I	28_A	0.849	1.00
26_D	34_S	0.847	1.00
52_E	56_D	0.840	1.00
111_E	261_L	0.839	1.00
27_R	31_D	0.836	1.00
60_P	63_A	0.832	1.00
284_I	288_D	0.830	1.00
162_V	191_L	0.829	1.00
40_A	44_G	0.826	1.00
320_R	324_T	0.824	1.00
38_V	43_F	0.823	1.00
34_S	39_L	0.815	1.00
20_A	32_R	0.815	1.00
282_V	323_L	0.814	1.00
22_D	30_A	0.813	1.00
25_V	36_N	0.811	1.00
37_P	43_F	0.808	1.00
61_V	71_L	0.807	1.00
303_D	307_V	0.807	1.00
295_E	307_V	0.806	1.00
45_D	52_E	0.802	1.00
45_D	48_G	0.801	1.00
24_F	31_D	0.800	1.00
161_F	197_F	0.797	1.00
32_R	38_V	0.796	1.00
29_A	39_L	0.796	1.00
308_L	312_V	0.794	1.00
72_L	75_Y	0.792	1.00
32_R	37_P	0.792	1.00
200_E	244_N	0.791	1.00
268_E	272_A	0.789	1.00
71_L	79_D	0.786	1.00
34_S	43_F	0.781	1.00
83_M	86_L	0.779	1.00
171_S	180_N	0.777	1.00
29_A	40_A	0.777	1.00
173_Y	178_A	0.774	1.00
25_V	40_A	0.771	1.00
34_S	41_F	0.771	1.00
101_D	148_S	0.770	1.00
21_I	33_I	0.770	1.00
305_R	308_L	0.769	1.00
185_F	232_L	0.768	1.00
29_A	37_P	0.768	1.00
47_F	50_D	0.763	1.00
123_D	127_T	0.758	1.00
26_D	31_D	0.758	1.00
63_A	67_W	0.757	1.00
60_P	68_I	0.755	1.00
64_D	74_E	0.749	1.00
149_T	263_F	0.749	1.00
161_F	195_I	0.748	1.00
58_N	63_A	0.748	1.00
70_G	73_E	0.747	1.00
307_V	313_L	0.746	1.00
24_F	29_A	0.746	1.00
48_G	52_E	0.744	1.00
48_G	51_Y	0.742	1.00
270_M	273_D	0.735	1.00
20_A	27_R	0.731	1.00
200_E	256_R	0.728	1.00
84_L	87_V	0.726	1.00
25_V	39_L	0.726	1.00
259_E	310_E	0.723	1.00
31_D	39_L	0.721	1.00
108_Q	261_L	0.720	1.00
20_A	33_I	0.718	1.00
308_L	328_L	0.715	1.00
164_V	184_V	0.715	1.00
32_R	41_F	0.712	1.00
67_W	74_E	0.710	1.00
21_I	30_A	0.708	1.00
152_G	155_H	0.707	1.00
69_D	72_L	0.705	1.00
296_T	304_L	0.705	1.00
272_A	293_A	0.705	1.00
20_A	26_D	0.702	1.00
46_E	49_V	0.701	1.00
65_P	68_I	0.700	1.00
118_A	122_R	0.697	1.00
32_R	40_A	0.697	1.00
58_N	64_D	0.696	1.00
39_L	42_V	0.693	1.00
25_V	41_F	0.692	1.00
230_I	235_D	0.692	1.00
25_V	37_P	0.691	1.00
303_D	306_L	0.687	1.00
24_F	34_S	0.686	1.00
35_A	40_A	0.686	1.00
74_E	81_E	0.684	1.00
171_S	179_K	0.684	1.00
21_I	26_D	0.682	1.00
97_V	155_H	0.681	1.00
26_D	44_G	0.679	1.00
322_E	326_D	0.675	1.00
107_D	110_A	0.675	1.00
246_P	260_I	0.674	1.00
286_D	290_A	0.673	1.00
313_L	317_V	0.669	1.00
275_I	293_A	0.669	1.00
67_W	72_L	0.667	1.00
169_I	183_K	0.664	1.00
71_L	80_D	0.664	1.00
282_V	305_R	0.663	1.00
64_D	71_L	0.662	1.00
50_D	54_A	0.662	1.00
122_R	125_L	0.661	1.00
26_D	41_F	0.659	1.00
173_Y	177_T	0.658	1.00
279_T	289_P	0.658	1.00
36_N	44_G	0.657	1.00
89_V	93_A	0.653	1.00
269_G	290_A	0.650	1.00
31_D	41_F	0.649	1.00
275_I	308_L	0.646	1.00
105_T	108_Q	0.645	1.00
127_T	133_V	0.645	1.00
28_A	41_F	0.645	1.00
27_R	33_I	0.644	1.00
21_I	31_D	0.644	1.00
54_A	61_V	0.642	0.99
53_T	56_D	0.640	0.99
22_D	25_V	0.639	0.99
24_F	30_A	0.638	0.99
22_D	27_R	0.636	0.99
63_A	74_E	0.635	0.99
98_S	102_I	0.634	0.99
70_G	74_E	0.633	0.99
287_F	325_Q	0.629	0.99
312_V	317_V	0.629	0.99
198_M	223_L	0.627	0.99
54_A	60_P	0.626	0.99
27_R	36_N	0.626	0.99
228_D	305_R	0.622	0.99
86_L	90_R	0.622	0.99
229_E	232_L	0.621	0.99
28_A	37_P	0.621	0.99
314_D	318_E	0.618	0.99
173_Y	180_N	0.618	0.99
111_E	259_E	0.618	0.99
71_L	78_E	0.616	0.99
57_A	62_Q	0.615	0.99
223_L	227_I	0.615	0.99
71_L	76_F	0.612	0.99
30_A	38_V	0.610	0.99
75_Y	78_E	0.608	0.99
62_Q	67_W	0.607	0.99
312_V	316_L	0.607	0.99
29_A	35_A	0.607	0.99
181_V	222_T	0.605	0.99
284_I	289_P	0.605	0.99
30_A	35_A	0.603	0.99
88_D	93_A	0.601	0.99
85_D	160_P	0.598	0.99
53_T	58_N	0.597	0.99
177_T	181_V	0.595	0.99
28_A	40_A	0.594	0.99
172_Q	176_E	0.590	0.99
55_R	72_L	0.590	0.99
309_R	314_D	0.588	0.99
47_F	52_E	0.587	0.99
49_V	55_R	0.585	0.99
23_W	29_A	0.584	0.99
21_I	29_A	0.583	0.99
82_E	86_L	0.581	0.99
150_A	161_F	0.576	0.99
24_F	37_P	0.575	0.99
22_D	31_D	0.575	0.99
26_D	32_R	0.573	0.99
309_R	312_V	0.572	0.99
25_V	43_F	0.572	0.99
110_A	317_V	0.570	0.99
24_F	33_I	0.570	0.99
56_D	59_R	0.565	0.99
55_R	64_D	0.564	0.99
95_L	120_E	0.564	0.99
74_E	77_D	0.563	0.99
21_I	27_R	0.562	0.99
27_R	40_A	0.562	0.99
292_L	311_A	0.561	0.99
162_V	187_V	0.561	0.99
172_Q	181_V	0.560	0.99
32_R	39_L	0.559	0.99
199_D	256_R	0.558	0.99
30_A	41_F	0.557	0.99
68_I	74_E	0.556	0.99
306_L	309_R	0.553	0.98
62_Q	66_Q	0.553	0.98
76_F	80_D	0.552	0.98
55_R	58_N	0.549	0.98
55_R	68_I	0.546	0.98
44_G	48_G	0.546	0.98
38_V	41_F	0.545	0.98
76_F	79_D	0.545	0.98
85_D	89_V	0.544	0.98
65_P	70_G	0.541	0.98
220_V	250_D	0.541	0.98
128_I	131_N	0.539	0.98
23_W	43_F	0.539	0.98
20_A	25_V	0.539	0.98
33_I	44_G	0.535	0.98
45_D	49_V	0.535	0.98
187_V	191_L	0.534	0.98
86_L	89_V	0.534	0.98
55_R	63_A	0.530	0.98
177_T	219_A	0.530	0.98
73_E	80_D	0.530	0.98
21_I	37_P	0.529	0.98
74_E	80_D	0.529	0.98
72_L	78_E	0.528	0.98
63_A	68_I	0.528	0.98
23_W	36_N	0.528	0.98
37_P	44_G	0.527	0.98
284_I	311_A	0.527	0.98
27_R	41_F	0.525	0.98
29_A	41_F	0.524	0.98
182_E	185_F	0.521	0.98
30_A	39_L	0.520	0.98
269_G	273_D	0.520	0.98
63_A	78_E	0.516	0.98
280_S	308_L	0.515	0.98
24_F	32_R	0.515	0.98
102_I	148_S	0.515	0.98
285_A	324_T	0.514	0.98
138_F	153_L	0.513	0.98
22_D	34_S	0.511	0.97
99_L	152_G	0.510	0.97
51_Y	58_N	0.510	0.97
170_T	207_T	0.509	0.97
201_F	249_L	0.508	0.97
51_Y	60_P	0.505	0.97
69_D	73_E	0.505	0.97
110_A	113_S	0.503	0.97
192_S	232_L	0.502	0.97
24_F	38_V	0.501	0.97
23_W	32_R	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4cr2J	1	0.9214	100	0.356	Contact Map
2ce7A	3	0.7317	100	0.375	Contact Map
3cf2A	3	0.7724	100	0.378	Contact Map
4ww0A	4	0.7344	100	0.385	Contact Map
4cr2L	1	0.8916	100	0.385	Contact Map
4cr2M	1	0.8889	100	0.397	Contact Map
2zanA	1	0.7019	100	0.399	Contact Map
2qp9X	1	0.6694	100	0.404	Contact Map
1xwiA	1	0.729	100	0.411	Contact Map
4ko8A	3	0.8645	100	0.412	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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