GREMLIN Database
Q9HNK1 - Uncharacterized protein
UniProt: Q9HNK1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 637 (508)
Sequences: 3394 (2376)
Seq/√Len: 105.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
485_L502_A5.1661.00
395_I399_V4.9981.00
399_V403_G4.4111.00
394_T399_V3.9731.00
399_V402_E3.6401.00
395_I402_E3.2691.00
409_I412_A3.0281.00
395_I403_G3.0161.00
395_I398_T2.9831.00
393_L399_V2.8591.00
487_A499_A2.8381.00
422_I433_A2.8151.00
389_G399_V2.8151.00
391_V395_I2.7841.00
386_V399_V2.6691.00
363_I366_S2.6241.00
360_R364_P2.6241.00
359_P363_I2.5791.00
399_V406_A2.5771.00
359_P362_I2.5451.00
203_Q207_T2.4731.00
357_V363_I2.4671.00
394_T402_E2.4301.00
387_L391_V2.4291.00
419_R483_K2.4271.00
485_L509_D2.4251.00
362_I366_S2.4091.00
393_L403_G2.4011.00
123_A141_G2.3781.00
357_V362_I2.3701.00
360_R363_I2.3241.00
391_V402_E2.3191.00
388_V402_E2.3041.00
407_R411_Q2.3021.00
338_F355_S2.2931.00
394_T403_G2.2901.00
389_G395_I2.2681.00
323_A327_L2.2591.00
394_T398_T2.2481.00
384_A399_V2.2091.00
398_T403_G2.1441.00
386_V403_G2.1181.00
206_V210_G2.1111.00
398_T402_E2.0761.00
388_V399_V2.0501.00
399_V405_F2.0341.00
359_P364_P2.0311.00
417_P481_N2.0211.00
391_V399_V2.0051.00
387_L399_V1.9801.00
499_A529_V1.9701.00
388_V395_I1.9531.00
388_V403_G1.9331.00
390_T399_V1.9021.00
503_D530_S1.9011.00
392_F399_V1.8861.00
384_A395_I1.8811.00
202_L206_V1.8751.00
500_Q527_L1.8631.00
387_L395_I1.8581.00
386_V395_I1.8551.00
119_L142_S1.8511.00
403_G406_A1.8471.00
359_P366_S1.8401.00
409_I413_L1.8391.00
475_R480_E1.8281.00
126_V137_A1.8061.00
121_G336_A1.8061.00
413_L416_I1.7981.00
389_G394_T1.7881.00
402_E406_A1.7791.00
487_A495_N1.7621.00
487_A498_V1.7551.00
384_A398_T1.7441.00
384_A394_T1.7431.00
356_A362_I1.7191.00
217_L221_A1.7081.00
503_D511_I1.7031.00
421_I482_A1.6931.00
390_T394_T1.6881.00
502_A509_D1.6771.00
362_I368_A1.6761.00
391_V398_T1.6721.00
388_V392_F1.6671.00
224_W279_D1.6571.00
358_G362_I1.6541.00
124_I129_L1.6521.00
386_V394_T1.6261.00
363_I368_A1.6191.00
389_G393_L1.6181.00
392_F395_I1.6181.00
338_F348_S1.6171.00
402_E405_F1.6141.00
198_V202_L1.6141.00
383_A399_V1.6001.00
383_A386_V1.5951.00
479_A506_F1.5861.00
390_T402_E1.5811.00
124_I128_V1.5671.00
479_A485_L1.5661.00
395_I400_V1.5621.00
357_V364_P1.5601.00
510_T530_S1.5571.00
386_V390_T1.5531.00
389_G403_G1.5511.00
384_A403_G1.5491.00
484_I546_I1.5451.00
360_R366_S1.5401.00
370_L373_V1.5361.00
395_I405_F1.5291.00
390_T403_G1.5221.00
388_V391_V1.5171.00
35_S56_V1.5171.00
288_A291_G1.5161.00
418_M483_K1.5111.00
33_V247_A1.5041.00
357_V360_R1.5011.00
338_F342_A1.4971.00
356_A363_I1.4911.00
30_A247_A1.4881.00
386_V402_E1.4791.00
391_V394_T1.4701.00
386_V398_T1.4661.00
390_T398_T1.4621.00
486_T542_I1.4601.00
364_P368_A1.4581.00
199_D203_Q1.4551.00
390_T395_I1.4331.00
142_S183_L1.4331.00
385_N389_G1.4271.00
398_T405_F1.4231.00
393_L398_T1.4221.00
394_T406_A1.4151.00
395_I406_A1.4051.00
421_I479_A1.4041.00
328_V332_I1.4021.00
408_H412_A1.3971.00
391_V403_G1.3971.00
387_L398_T1.3941.00
412_A416_I1.3911.00
123_A138_F1.3881.00
357_V366_S1.3671.00
392_F403_G1.3661.00
423_V485_L1.3641.00
491_D494_V1.3631.00
383_A387_L1.3601.00
389_G398_T1.3591.00
394_T405_F1.3521.00
117_I121_G1.3480.99
356_A359_P1.3430.99
285_E290_K1.3370.99
314_L389_G1.3360.99
360_R368_A1.3310.99
358_G363_I1.3270.99
383_A395_I1.3220.99
387_L390_T1.3160.99
389_G402_E1.3150.99
31_L57_V1.3110.99
204_D207_T1.3090.99
384_A402_E1.3080.99
123_A134_W1.3070.99
389_G392_F1.3060.99
533_S536_L1.3030.99
396_L399_V1.3030.99
383_A391_V1.2960.99
358_G368_A1.2950.99
428_V542_I1.2920.99
383_A403_G1.2890.99
120_F124_I1.2890.99
341_T351_R1.2840.99
133_G136_V1.2790.99
397_L401_F1.2780.99
388_V398_T1.2750.99
410_A413_L1.2740.99
387_L394_T1.2720.99
218_V222_V1.2690.99
409_I416_I1.2600.99
57_V64_V1.2560.99
396_L400_V1.2540.99
358_G364_P1.2480.99
362_I365_A1.2450.99
216_G219_V1.2410.99
197_S202_L1.2390.99
489_T498_V1.2350.99
370_L378_Y1.2320.99
357_V361_G1.2300.99
77_A304_G1.2250.99
383_A402_E1.2250.99
537_A541_G1.2160.99
354_M362_I1.2150.99
354_M357_V1.2140.99
279_D457_R1.2110.99
205_F208_R1.2100.99
88_V146_A1.2100.99
225_Y229_R1.2040.99
387_L402_E1.2040.99
361_G366_S1.1970.99
204_D208_R1.1920.99
354_M363_I1.1920.99
523_A526_D1.1920.99
422_I432_L1.1860.99
408_H411_Q1.1850.99
118_A122_T1.1820.99
286_I289_F1.1800.99
447_E452_A1.1760.99
449_D452_A1.1700.99
143_L368_A1.1690.99
423_V498_V1.1680.99
349_A353_F1.1650.98
287_E291_G1.1640.98
385_N399_V1.1570.98
165_V350_E1.1560.98
40_D43_Q1.1510.98
197_S201_V1.1500.98
398_T406_A1.1500.98
362_I367_V1.1490.98
403_G407_R1.1480.98
254_G258_T1.1310.98
112_T116_A1.1280.98
398_T404_G1.1240.98
119_L183_L1.1220.98
384_A387_L1.1200.98
203_Q206_V1.1190.98
122_T126_V1.1180.98
359_P368_A1.1100.98
197_S200_V1.1080.98
407_R410_A1.0980.98
400_V404_G1.0960.98
410_A415_V1.0900.98
396_L403_G1.0850.98
401_F405_F1.0800.98
225_Y228_R1.0790.98
67_L75_T1.0750.97
384_A388_V1.0710.97
363_I367_V1.0710.97
342_A345_R1.0700.97
326_V330_L1.0680.97
285_E291_G1.0650.97
500_Q504_S1.0610.97
400_V403_G1.0580.97
396_L402_E1.0560.97
479_A505_K1.0530.97
359_P367_V1.0510.97
389_G406_A1.0510.97
52_L56_V1.0500.97
315_L319_V1.0500.97
215_V219_V1.0490.97
327_L331_V1.0490.97
411_Q415_V1.0480.97
168_A346_Y1.0470.97
486_T546_I1.0470.97
368_A371_F1.0330.97
212_G220_A1.0180.96
110_L340_S1.0150.96
126_V132_T1.0150.96
407_R413_L1.0150.96
390_T393_L1.0090.96
125_V129_L1.0090.96
385_N395_I1.0060.96
180_A367_V1.0050.96
116_A120_F1.0050.96
447_E453_V1.0020.96
132_T137_A1.0010.96
354_M359_P1.0010.96
517_N520_N1.0000.96
320_A324_V1.0000.96
146_A183_L0.9980.96
393_L402_E0.9980.96
496_L527_L0.9970.96
392_F402_E0.9970.96
45_P154_P0.9890.96
388_V393_L0.9820.96
342_A348_S0.9800.96
56_V61_V0.9790.96
453_V463_V0.9790.96
471_T505_K0.9790.96
515_A521_I0.9780.96
234_K451_E0.9770.96
496_L523_A0.9750.95
393_L406_A0.9690.95
55_I61_V0.9630.95
211_T215_V0.9620.95
212_G216_G0.9610.95
422_I486_T0.9600.95
383_A398_T0.9600.95
224_W278_A0.9550.95
69_S77_A0.9550.95
399_V404_G0.9530.95
516_N534_S0.9530.95
357_V373_V0.9490.95
111_V114_G0.9480.95
118_A337_V0.9440.95
26_A254_G0.9370.94
357_V368_A0.9360.94
383_A394_T0.9350.94
384_A391_V0.9230.94
389_G405_F0.9220.94
198_V201_V0.9220.94
426_G429_G0.9210.94
329_A360_R0.9200.94
425_G433_A0.9200.94
364_P367_V0.9190.94
468_G498_V0.9180.94
391_V396_L0.9170.94
362_I373_V0.9160.94
456_A461_Y0.9130.94
423_V468_G0.9130.94
390_T396_L0.9120.94
498_V502_A0.9100.93
147_T176_N0.9070.93
385_N388_V0.9040.93
479_A509_D0.9020.93
106_A171_T0.9020.93
392_F396_L0.8990.93
388_V394_T0.8980.93
478_G481_N0.8980.93
118_A176_N0.8960.93
227_L248_G0.8950.93
475_R505_K0.8940.93
253_Y264_G0.8940.93
452_A455_R0.8870.93
199_D202_L0.8850.93
115_A179_T0.8850.93
492_D495_N0.8830.92
390_T406_A0.8830.92
108_L112_T0.8820.92
361_G365_A0.8810.92
285_E288_A0.8780.92
210_G214_L0.8760.92
183_L367_V0.8700.92
359_P370_L0.8670.92
359_P365_A0.8650.92
356_A360_R0.8630.92
114_G118_A0.8610.91
139_L143_L0.8610.91
522_D526_D0.8600.91
489_T495_N0.8540.91
386_V391_V0.8470.91
326_V393_L0.8450.91
28_I36_Q0.8450.91
321_G324_V0.8440.91
456_A459_E0.8420.91
115_A175_V0.8410.91
533_S537_A0.8340.90
93_F273_V0.8340.90
419_R442_N0.8300.90
496_L520_N0.8300.90
502_A506_F0.8290.90
435_R543_D0.8290.90
283_E291_G0.8250.90
408_H413_L0.8240.90
356_A366_S0.8220.89
379_G399_V0.8210.89
536_L540_W0.8200.89
287_E290_K0.8190.89
210_G322_L0.8160.89
388_V400_V0.8150.89
393_L396_L0.8110.89
537_A542_I0.8110.89
205_F216_G0.8110.89
201_V204_D0.8100.89
421_I485_L0.8080.89
386_V405_F0.8080.89
110_L344_S0.8060.89
96_K277_N0.8040.88
200_V203_Q0.8030.88
363_I371_F0.7960.88
541_G545_I0.7950.88
361_G364_P0.7910.88
392_F406_A0.7900.88
156_L166_G0.7890.87
408_H416_I0.7890.87
387_L403_G0.7870.87
251_V255_A0.7860.87
285_E470_D0.7860.87
172_E354_M0.7850.87
487_A513_A0.7830.87
211_T219_V0.7810.87
123_A128_V0.7810.87
410_A414_N0.7790.87
540_W547_E0.7780.87
495_N527_L0.7780.87
304_G308_L0.7700.86
169_L305_L0.7690.86
213_V217_L0.7680.86
203_Q212_G0.7670.86
486_T512_I0.7660.86
412_A415_V0.7660.86
23_P26_A0.7650.86
208_R212_G0.7650.86
48_L400_V0.7620.86
334_P356_A0.7600.85
534_S538_T0.7590.85
399_V407_R0.7570.85
356_A364_P0.7530.85
354_M360_R0.7500.85
286_I290_K0.7490.85
361_G368_A0.7490.85
86_V184_A0.7460.84
209_L220_A0.7460.84
497_L500_Q0.7450.84
420_V436_L0.7440.84
387_L392_F0.7440.84
132_T140_I0.7430.84
363_I373_V0.7400.84
512_I546_I0.7400.84
446_V464_H0.7400.84
356_A405_F0.7390.84
362_I371_F0.7380.84
115_A118_A0.7370.84
44_V51_I0.7370.84
518_P533_S0.7350.84
152_I357_V0.7350.84
95_L276_G0.7340.83
141_G145_V0.7330.83
384_A405_F0.7330.83
152_I173_G0.7310.83
202_L205_F0.7290.83
341_T346_Y0.7260.83
529_V533_S0.7250.83
140_I144_L0.7240.83
385_N403_G0.7240.83
101_R104_P0.7230.83
514_R534_S0.7210.82
417_P483_K0.7210.82
98_E102_E0.7210.82
176_N180_A0.7180.82
133_G137_A0.7180.82
85_A88_V0.7170.82
494_V497_L0.7170.82
241_A245_V0.7170.82
437_E443_V0.7170.82
42_L469_S0.7160.82
319_V322_L0.7160.82
268_V351_R0.7150.82
58_G65_V0.7120.82
445_L461_Y0.7110.81
490_G534_S0.7110.81
230_I244_V0.7100.81
408_H414_N0.7090.81
512_I542_I0.7080.81
55_I396_L0.7070.81
143_L183_L0.7060.81
104_P540_W0.7040.81
363_I370_L0.7040.81
223_V248_G0.7040.81
244_V248_G0.7040.81
543_D547_E0.7030.81
384_A389_G0.7020.81
353_F360_R0.7020.81
196_R199_D0.6990.80
120_F123_A0.6990.80
385_N402_E0.6980.80
389_G400_V0.6960.80
230_I241_A0.6960.80
360_R365_A0.6950.80
387_L406_A0.6920.80
386_V406_A0.6920.80
433_A443_V0.6920.80
391_V397_L0.6920.80
126_V130_L0.6910.80
123_A126_V0.6900.79
425_G445_L0.6900.79
173_G176_N0.6890.79
394_T404_G0.6890.79
407_R415_V0.6870.79
50_L299_S0.6860.79
317_L321_G0.6840.79
198_V203_Q0.6820.79
390_T405_F0.6810.79
492_D523_A0.6790.78
492_D520_N0.6780.78
356_A368_A0.6780.78
165_V353_F0.6770.78
30_A34_L0.6770.78
397_L402_E0.6760.78
221_A225_Y0.6750.78
36_Q299_S0.6740.78
252_A274_L0.6740.78
394_T400_V0.6730.78
392_F405_F0.6720.78
387_L400_V0.6710.78
362_I370_L0.6710.78
53_A278_A0.6710.78
449_D463_V0.6710.78
506_F509_D0.6700.77
535_S539_A0.6690.77
496_L500_Q0.6690.77
429_G488_A0.6670.77
453_V465_S0.6670.77
317_L386_V0.6660.77
471_T501_L0.6660.77
532_V541_G0.6650.77
358_G371_F0.6630.77
181_A265_I0.6620.77
420_V441_E0.6610.77
353_F368_A0.6610.77
94_H150_T0.6610.77
345_R348_S0.6610.77
26_A250_L0.6600.76
339_A343_R0.6590.76
150_T173_G0.6580.76
347_T351_R0.6570.76
385_N394_T0.6560.76
273_V285_E0.6560.76
452_A456_A0.6550.76
55_I210_G0.6550.76
172_E337_V0.6530.76
420_V486_T0.6530.76
484_I510_T0.6530.76
286_I291_G0.6520.76
390_T400_V0.6500.75
206_V209_L0.6480.75
134_W137_A0.6480.75
427_T490_G0.6480.75
151_V445_L0.6460.75
359_P373_V0.6450.75
148_G301_V0.6440.75
510_T531_T0.6410.74
331_V334_P0.6410.74
26_A33_V0.6410.74
27_T31_L0.6410.74
385_N398_T0.6400.74
535_S538_T0.6400.74
409_I414_N0.6400.74
386_V393_L0.6390.74
386_V400_V0.6390.74
388_V406_A0.6390.74
102_E105_G0.6390.74
197_S204_D0.6390.74
312_Q316_D0.6380.74
319_V323_A0.6380.74
427_T514_R0.6370.74
119_L123_A0.6370.74
532_V542_I0.6370.74
327_L481_N0.6340.74
420_V484_I0.6340.74
537_A540_W0.6330.73
64_V444_V0.6330.73
400_V405_F0.6320.73
514_R535_S0.6310.73
450_P454_E0.6300.73
531_T545_I0.6300.73
401_F404_G0.6290.73
57_V307_A0.6270.73
310_S313_T0.6260.73
483_K510_T0.6250.72
313_T317_L0.6250.72
107_W126_V0.6240.72
63_G80_V0.6240.72
215_V274_L0.6240.72
122_T144_L0.6230.72
520_N524_F0.6230.72
66_T76_L0.6220.72
26_A247_A0.6220.72
107_W175_V0.6200.72
240_N539_A0.6190.72
142_S186_V0.6180.72
23_P152_I0.6160.71
358_G366_S0.6160.71
241_A280_L0.6150.71
172_E180_A0.6140.71
118_A336_A0.6130.71
209_L213_V0.6120.71
342_A351_R0.6120.71
146_A180_A0.6110.71
499_A511_I0.6110.71
245_V276_G0.6110.71
117_I340_S0.6100.71
242_R266_A0.6100.71
407_R416_I0.6080.70
150_T180_A0.6080.70
116_A119_L0.6080.70
391_V400_V0.6080.70
428_V488_A0.6060.70
443_V462_T0.6060.70
128_V134_W0.6060.70
150_T299_S0.6030.70
103_A106_A0.6030.70
245_V249_A0.6020.70
125_V136_V0.6020.70
105_G315_L0.6020.70
216_G220_A0.6010.70
91_G95_L0.5980.69
396_L406_A0.5970.69
384_A406_A0.5970.69
201_V207_T0.5960.69
266_A297_V0.5960.69
108_L111_V0.5950.69
544_N548_R0.5950.69
68_S307_A0.5930.69
421_I509_D0.5920.68
527_L530_S0.5920.68
243_L249_A0.5880.68
316_D320_A0.5870.68
65_V68_S0.5870.68
408_H415_V0.5870.68
348_S352_V0.5850.67
390_T401_F0.5850.67
197_S207_T0.5840.67
217_L222_V0.5820.67
33_V244_V0.5810.67
247_A490_G0.5810.67
222_V225_Y0.5790.67
61_V64_V0.5780.67
239_Q243_L0.5770.66
383_A388_V0.5770.66
534_S539_A0.5750.66
103_A107_W0.5750.66
425_G461_Y0.5740.66
113_V340_S0.5740.66
446_V477_A0.5740.66
387_L393_L0.5740.66
95_L307_A0.5730.66
112_T175_V0.5720.66
391_V405_F0.5710.66
92_A306_A0.5700.65
384_A393_L0.5700.65
389_G408_H0.5700.65
542_I546_I0.5700.65
319_V324_V0.5700.65
163_D195_Q0.5690.65
543_D546_I0.5680.65
285_E289_F0.5670.65
427_T535_S0.5670.65
363_I369_T0.5660.65
145_V333_R0.5650.65
27_T64_V0.5650.65
484_I488_A0.5640.65
456_A463_V0.5640.65
513_A529_V0.5640.65
346_Y349_A0.5630.65
120_F198_V0.5630.65
239_Q250_L0.5630.65
346_Y351_R0.5620.64
52_L69_S0.5620.64
434_E459_E0.5620.64
121_G124_I0.5610.64
358_G361_G0.5600.64
362_I372_A0.5600.64
333_R357_V0.5600.64
209_L216_G0.5600.64
212_G274_L0.5600.64
368_A373_V0.5600.64
346_Y350_E0.5590.64
432_L486_T0.5580.64
126_V141_G0.5580.64
83_S267_A0.5570.64
536_L539_A0.5570.64
360_R371_F0.5560.64
322_L326_V0.5560.64
245_V303_I0.5560.64
115_A145_V0.5550.63
110_L114_G0.5540.63
399_V410_A0.5540.63
518_P521_I0.5530.63
422_I539_A0.5520.63
426_G468_G0.5520.63
320_A323_A0.5520.63
539_A546_I0.5500.63
429_G447_E0.5500.63
59_P466_G0.5500.63
196_R200_V0.5500.63
83_S301_V0.5490.63
264_G300_F0.5490.63
39_A52_L0.5490.63
144_L427_T0.5490.63
403_G408_H0.5480.62
84_V296_V0.5470.62
533_S538_T0.5470.62
241_A244_V0.5460.62
121_G332_I0.5460.62
368_A372_A0.5450.62
223_V227_L0.5450.62
310_S316_D0.5440.62
244_V249_A0.5430.62
321_G325_A0.5430.62
80_V304_G0.5430.62
33_V36_Q0.5430.62
115_A183_L0.5430.62
226_I509_D0.5430.62
86_V100_L0.5420.62
243_L297_V0.5410.61
362_I369_T0.5410.61
383_A405_F0.5400.61
147_T150_T0.5380.61
247_A513_A0.5380.61
144_L329_A0.5370.61
139_L187_V0.5370.61
124_I493_D0.5360.61
389_G396_L0.5360.61
511_I529_V0.5350.61
340_S344_S0.5350.61
52_L548_R0.5350.61
132_T325_A0.5350.61
538_T541_G0.5340.60
206_V213_V0.5340.60
50_L58_G0.5330.60
39_A49_F0.5320.60
114_G363_I0.5320.60
211_T220_A0.5310.60
151_V298_L0.5310.60
322_L386_V0.5310.60
111_V115_A0.5310.60
433_A445_L0.5300.60
485_L498_V0.5300.60
397_L440_G0.5290.60
455_R459_E0.5290.60
529_V542_I0.5260.59
27_T57_V0.5250.59
337_V340_S0.5250.59
301_V306_A0.5250.59
255_A259_L0.5240.59
213_V220_A0.5240.59
113_V116_A0.5240.59
480_E508_I0.5240.59
114_G173_G0.5240.59
176_N301_V0.5240.59
533_S539_A0.5240.59
404_G408_H0.5220.59
46_S107_W0.5220.59
503_D529_V0.5220.59
59_P307_A0.5210.59
357_V365_A0.5210.59
361_G367_V0.5200.58
444_V469_S0.5190.58
81_G149_P0.5190.58
193_N213_V0.5180.58
212_G445_L0.5170.58
325_A390_T0.5170.58
107_W114_G0.5160.58
24_V88_V0.5160.58
392_F401_F0.5160.58
149_P173_G0.5140.58
541_G544_N0.5140.58
122_T329_A0.5130.57
207_T215_V0.5120.57
21_I24_V0.5120.57
83_S269_A0.5110.57
366_S370_L0.5110.57
267_A301_V0.5110.57
32_G223_V0.5100.57
513_A527_L0.5090.57
180_A184_A0.5090.57
137_A467_D0.5090.57
284_K287_E0.5080.57
512_I531_T0.5070.57
213_V218_V0.5070.57
359_P402_E0.5070.57
214_L217_L0.5060.56
365_A371_F0.5060.56
360_R367_V0.5060.56
468_G489_T0.5050.56
190_V331_V0.5050.56
145_V176_N0.5030.56
124_I134_W0.5030.56
263_A269_A0.5030.56
114_G176_N0.5020.56
243_L296_V0.5020.56
39_A178_V0.5010.56
280_L465_S0.5000.56
34_L38_V0.5000.56
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bwzA 2 0.5965 100 0.643 Contact Map
4czbA 2 0.6122 100 0.655 Contact Map
4cz8A 2 0.6091 100 0.658 Contact Map
4gx0A 3 0.4819 100 0.749 Contact Map
1lnqA 6 0.4584 100 0.749 Contact Map
2aefA 2 0.3407 100 0.766 Contact Map
3l4bC 2 0.3344 100 0.787 Contact Map
3mt5A 5 0.3312 100 0.787 Contact Map
4g65A 2 0.3485 100 0.788 Contact Map
3nafA 3 0.3532 100 0.788 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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