Q9HNJ3 - HALSA - GREMLIN Contacts

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Q9HNJ3 - Probable acetyltransferase

UniProt:	Q9HNJ3	Sequences: MPGRPFISGERVDLCPVSEDDVDFLHDTINDPAVWPPVGARTPVTEREEREWYEEQASADNGTVNFVVAVDGAPIGSLGVHGVDDTNGSAELGVFLAEDHWGEGYGTEAGRLATTYAFDQHRRHRVFARVFEDNQASMRVWERLGFEREGTHRDAMFLHGEYLDVHCYGVLESEWRDQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	178 (164)
Sequences:	20195 (15578)
Seq/√Len:	1216.4

ECOLI - ATDA RIMJ RIML YHHY MNAT
BACSU - YOKL YDAF YJCK YOAA YNAD YKKB YJDG YWNH
HALSA - Q9HNJ3 Q9HMZ2 Q9HRY6 Q9HRY5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
128_A	141_W	2.880	1.00
107_T	143_R	2.788	1.00
33_A	98_E	2.418	1.00
15_C	21_D	2.403	1.00
149_E	169_G	2.379	1.00
11_R	108_E	2.308	1.00
90_A	123_R	2.266	1.00
130_V	138_M	2.221	1.00
80_V	117_A	2.216	1.00
148_R	151_T	2.195	1.00
148_R	166_H	2.114	1.00
9_G	112_L	2.099	1.00
130_V	141_W	2.048	1.00
9_G	108_E	2.030	1.00
139_R	142_E	2.027	1.00
138_M	142_E	1.978	1.00
8_S	69_A	1.971	1.00
115_T	119_D	1.895	1.00
92_L	110_G	1.837	1.00
31_D	98_E	1.819	1.00
124_H	154_D	1.769	1.00
114_T	146_F	1.754	1.00
23_D	46_E	1.730	1.00
114_T	126_V	1.726	1.00
24_F	74_P	1.720	1.00
67_V	74_P	1.674	1.00
151_T	166_H	1.670	1.00
22_V	50_R	1.627	1.00
46_E	50_R	1.619	1.00
110_G	144_L	1.612	1.00
78_L	109_A	1.606	1.00
138_M	148_R	1.605	1.00
138_M	166_H	1.594	1.00
17_V	67_V	1.561	1.00
112_L	115_T	1.527	1.00
132_E	164_D	1.515	1.00
157_F	162_Y	1.511	1.00
45_T	48_E	1.495	1.00
96_L	106_G	1.481	1.00
97_A	100_H	1.468	1.00
19_E	54_E	1.466	1.00
142_E	148_R	1.447	1.00
135_Q	138_M	1.441	1.00
52_W	56_Q	1.412	1.00
94_V	141_W	1.391	1.00
13_D	69_A	1.389	1.00
7_I	112_L	1.380	1.00
124_H	162_Y	1.380	1.00
107_T	140_V	1.360	1.00
8_S	13_D	1.341	1.00
125_R	169_G	1.341	1.00
75_I	100_H	1.329	1.00
138_M	168_Y	1.314	1.00
116_Y	120_Q	1.270	1.00
78_L	113_A	1.269	1.00
132_E	151_T	1.264	1.00
155_A	165_V	1.255	1.00
28_T	97_A	1.252	1.00
24_F	73_A	1.241	1.00
68_V	96_L	1.240	1.00
117_A	126_V	1.228	1.00
94_V	137_S	1.205	1.00
133_D	163_L	1.191	1.00
152_H	167_C	1.187	1.00
106_G	140_V	1.147	1.00
77_S	95_F	1.144	1.00
26_H	46_E	1.143	1.00
68_V	109_A	1.136	1.00
22_V	53_Y	1.122	1.00
73_A	100_H	1.120	1.00
28_T	95_F	1.116	1.00
50_R	54_E	1.098	1.00
9_G	12_V	1.087	1.00
125_R	149_E	1.085	1.00
91_E	129_R	1.083	1.00
117_A	121_H	1.082	1.00
7_I	116_Y	1.082	1.00
151_T	164_D	1.077	1.00
130_V	168_Y	1.076	1.00
101_W	136_A	1.076	1.00
73_A	99_D	1.067	1.00
98_E	101_W	1.066	1.00
34_V	101_W	1.065	1.00
22_V	46_E	1.060	1.00
116_Y	121_H	1.051	1.00
137_S	141_W	1.037	1.00
7_I	14_L	1.036	1.00
154_D	164_D	1.030	1.00
128_A	146_F	1.030	1.00
19_E	50_R	1.027	1.00
33_A	36_P	1.026	1.00
89_S	127_F	1.015	1.00
148_R	168_Y	1.006	1.00
51_E	55_E	0.995	1.00
114_T	170_V	0.983	1.00
107_T	111_R	0.983	1.00
84_D	87_N	0.981	1.00
153_R	164_D	0.979	1.00
24_F	27_D	0.976	1.00
44_V	48_E	0.971	1.00
153_R	169_G	0.967	1.00
131_F	163_L	0.963	1.00
140_V	144_L	0.955	1.00
66_F	113_A	0.949	1.00
114_T	144_L	0.940	1.00
141_W	146_F	0.935	1.00
135_Q	139_R	0.917	1.00
12_V	105_Y	0.912	1.00
132_E	166_H	0.908	1.00
80_V	113_A	0.907	1.00
33_A	101_W	0.904	1.00
111_R	115_T	0.904	1.00
17_V	77_S	0.899	1.00
146_F	170_V	0.899	1.00
117_A	123_R	0.894	1.00
107_T	144_L	0.883	1.00
12_V	109_A	0.881	1.00
13_D	72_G	0.877	1.00
43_P	49_E	0.876	1.00
94_V	106_G	0.862	1.00
89_S	125_R	0.860	1.00
66_F	116_Y	0.859	1.00
19_E	57_A	0.858	1.00
102_G	136_A	0.856	1.00
19_E	22_V	0.852	1.00
111_R	144_L	0.852	1.00
23_D	27_D	0.829	1.00
96_L	105_Y	0.823	1.00
88_G	162_Y	0.814	1.00
152_H	155_A	0.813	1.00
149_E	153_R	0.810	1.00
89_S	155_A	0.809	1.00
26_H	30_N	0.804	1.00
47_R	50_R	0.795	1.00
15_C	67_V	0.790	1.00
91_E	127_F	0.788	1.00
22_V	26_H	0.787	1.00
88_G	157_F	0.782	1.00
51_E	54_E	0.781	1.00
108_E	112_L	0.774	1.00
27_D	97_A	0.768	1.00
135_Q	142_E	0.767	1.00
55_E	59_A	0.762	1.00
29_I	95_F	0.760	1.00
26_H	49_E	0.758	1.00
142_E	168_Y	0.755	1.00
154_D	162_Y	0.753	1.00
130_V	137_S	0.749	1.00
27_D	73_A	0.745	1.00
35_W	38_V	0.735	1.00
37_P	131_F	0.733	1.00
102_G	107_T	0.730	1.00
110_G	140_V	0.727	1.00
10_E	108_E	0.723	1.00
54_E	58_S	0.721	1.00
100_H	103_E	0.719	1.00
9_G	14_L	0.717	1.00
157_F	161_E	0.715	1.00
59_A	62_G	0.713	1.00
48_E	51_E	0.711	1.00
94_V	110_G	0.710	1.00
130_V	166_H	0.693	1.00
106_G	110_G	0.689	1.00
129_R	152_H	0.688	1.00
24_F	97_A	0.688	1.00
139_R	143_R	0.687	1.00
47_R	51_E	0.681	1.00
129_R	165_V	0.680	1.00
28_T	74_P	0.678	1.00
105_Y	108_E	0.675	1.00
31_D	97_A	0.670	1.00
27_D	99_D	0.670	1.00
107_T	136_A	0.669	1.00
128_A	137_S	0.667	1.00
96_L	101_W	0.663	1.00
59_A	63_T	0.662	1.00
37_P	133_D	0.662	1.00
94_V	140_V	0.658	1.00
11_R	104_G	0.657	1.00
133_D	161_E	0.651	1.00
55_E	58_S	0.650	1.00
68_V	105_Y	0.648	1.00
75_I	105_Y	0.643	1.00
102_G	139_R	0.643	1.00
136_A	139_R	0.642	1.00
158_L	161_E	0.638	1.00
70_V	105_Y	0.630	1.00
15_C	18_S	0.625	1.00
73_A	97_A	0.623	1.00
132_E	138_M	0.622	1.00
56_Q	65_N	0.617	1.00
90_A	117_A	0.617	1.00
78_L	110_G	0.605	1.00
74_P	77_S	0.602	1.00
144_L	170_V	0.602	1.00
44_V	49_E	0.601	1.00
102_G	140_V	0.596	1.00
96_L	100_H	0.593	1.00
156_M	165_V	0.590	1.00
32_P	36_P	0.589	1.00
65_N	79_G	0.588	1.00
118_F	170_V	0.587	1.00
80_V	90_A	0.586	1.00
12_V	108_E	0.586	1.00
31_D	101_W	0.586	1.00
18_S	21_D	0.585	1.00
141_W	168_Y	0.585	1.00
69_A	72_G	0.582	1.00
128_A	168_Y	0.578	1.00
88_G	124_H	0.576	1.00
70_V	75_I	0.576	1.00
129_R	167_C	0.571	1.00
35_W	40_A	0.569	1.00
114_T	118_F	0.568	1.00
46_E	49_E	0.567	1.00
110_G	146_F	0.563	1.00
16_P	57_A	0.551	1.00
127_F	152_H	0.550	1.00
158_L	163_L	0.549	1.00
147_E	153_R	0.547	1.00
96_L	109_A	0.546	1.00
125_R	155_A	0.542	1.00
81_H	91_E	0.539	1.00
38_V	95_F	0.538	1.00
68_V	76_G	0.538	1.00
62_G	66_F	0.533	1.00
79_G	93_G	0.531	1.00
17_V	25_L	0.531	1.00
157_F	160_G	0.528	1.00
29_I	77_S	0.525	1.00
83_V	90_A	0.522	1.00
24_F	28_T	0.521	1.00
49_E	52_W	0.519	1.00
82_G	90_A	0.518	1.00
92_L	126_V	0.518	1.00
127_F	155_A	0.517	1.00
90_A	126_V	0.517	1.00
34_V	95_F	0.516	1.00
150_G	153_R	0.513	1.00
25_L	29_I	0.512	1.00
115_T	120_Q	0.503	1.00
131_F	158_L	0.503	1.00
53_Y	56_Q	0.503	1.00
61_N	64_V	0.501	1.00
126_V	146_F	0.501	1.00
63_T	66_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vzyA	3	0.8989	100	0.3	Contact Map
3pzjA	2	0.9831	100	0.304	Contact Map
1yreA	2	0.9551	100	0.32	Contact Map
2z10A	2	0.9888	100	0.324	Contact Map
2fckA	2	0.9494	100	0.332	Contact Map
3r9fA	1	0.9494	100	0.335	Contact Map
1nslA	3	0.9719	100	0.336	Contact Map
3tcvA	2	0.9944	100	0.347	Contact Map
4r9mA	5	0.9438	100	0.355	Contact Map
3tthA	5	0.9157	100	0.36	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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