GREMLIN Database
Q9HND9 - H+-transporting ATP synthase subunit K
UniProt: Q9HND9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 71 (63)
Sequences: 1210 (614)
Seq/√Len: 77.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
17_A60_A4.8821.00
11_A15_G3.3271.00
14_V64_V2.9951.00
25_E54_E2.6841.00
56_L59_L2.2121.00
20_A24_A1.8081.00
62_V65_F1.7801.00
32_A50_T1.7321.00
42_L45_T1.5440.99
12_L15_G1.5420.99
22_G26_R1.5270.99
7_K10_A1.4730.99
13_A64_V1.4160.99
51_V55_T1.3760.99
39_D42_L1.3310.98
58_I62_V1.3110.98
9_A20_A1.2620.97
8_A12_L1.2370.97
53_P56_L1.2130.97
55_T62_V1.2070.97
29_G50_T1.1680.96
35_A46_G1.1450.96
12_L16_L1.1340.95
35_A42_L1.1140.95
18_A62_V1.1060.95
18_A57_V1.0960.94
26_R30_S1.0830.94
25_E29_G1.0810.94
50_T54_E1.0490.93
11_A22_G1.0380.93
9_A13_A1.0310.92
14_V66_V1.0190.92
23_Y30_S1.0120.92
61_L66_V0.9920.91
37_A40_P0.9780.90
27_G30_S0.9170.87
14_V60_A0.9010.86
51_V58_I0.8990.86
21_A46_G0.8960.86
53_P57_V0.8680.84
61_L65_F0.8470.82
9_A24_A0.8410.82
10_A63_V0.8260.81
51_V67_V0.8160.80
44_G65_F0.8080.79
13_A38_E0.8010.79
54_E57_V0.7990.79
16_L41_D0.7990.79
29_G33_V0.7980.78
48_I56_L0.7870.77
15_G22_G0.7840.77
25_E50_T0.7820.77
21_A57_V0.7810.77
58_I61_L0.7770.77
24_A28_I0.7690.76
21_A54_E0.7530.74
23_Y27_G0.7490.74
33_V54_E0.7320.72
39_D52_L0.7190.71
34_G39_D0.7110.70
13_A63_V0.6890.68
36_I62_V0.6760.66
9_A31_A0.6750.66
38_E61_L0.6650.65
19_L22_G0.6570.64
34_G37_A0.6550.64
22_G54_E0.6520.63
9_A53_P0.6440.62
20_A59_L0.6400.62
30_S57_V0.6340.61
24_A53_P0.6260.60
23_Y61_L0.6180.59
41_D46_G0.6110.58
38_E47_L0.6080.58
32_A48_I0.6060.58
5_T8_A0.5850.55
21_A47_L0.5780.54
8_A34_G0.5670.53
28_I53_P0.5660.53
49_L54_E0.5650.53
43_F67_V0.5600.52
43_F50_T0.5500.51
28_I41_D0.5490.51
15_G27_G0.5470.50
16_L23_Y0.5470.50
11_A52_L0.5360.49
46_G50_T0.5340.49
32_A57_V0.5260.48
30_S50_T0.5210.47
27_G35_A0.5150.46
15_G19_L0.5110.46
18_A25_E0.5110.46
22_G30_S0.5050.45
24_A59_L0.5000.44
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2bl2A 3 1 99.5 0.247 Contact Map
3j9tY 3 0.9577 99.5 0.262 Contact Map
4cbkA 3 0.9155 99.3 0.345 Contact Map
4v1gA 3 1 99.3 0.346 Contact Map
1wu0A 1 0.9577 99.3 0.348 Contact Map
2xquA 3 1 99.3 0.355 Contact Map
4bemJ 1 0.9859 99.2 0.363 Contact Map
3zk1A 5 0.9859 99.2 0.365 Contact Map
1a91A 1 1 99.2 0.371 Contact Map
4f4sA 3 0.9718 99.2 0.373 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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