Q9HND3 - HALSA - GREMLIN Contacts

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Q9HND3 - Electron transfer flavoprotein subunit beta

UniProt:	Q9HND3	Sequences: MKVLVTVKEVAAVEDDFEISGTEIESTYLDYDLNEWDDYAVEEAVQLAEAGDDVEVVAVTIGPERAEETIRMALAKGADRAVRVWDDAIEETELLDVETKARLLAAVVEDEDPELVFSGVQANDDSFGATGIALAETLGVQWAAVVNDLDTAGVLDEGVASVRRELEGGVEELTDVELPAVLTIQTGINEPRYASLRGIRQAQSKEIAPKSLDDLGLDADIVASSLDITAMYEPETESDAEYIEGDAGEQASGVADVLRDAGVVGE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (244)
Sequences:	3515 (2037)
Seq/√Len:	130.4

ECOLI - FIXA YGCR YDIQ
BACSU - ETFB
HALSA - Q9HND3
SULSO - Q97V71 Q97V19

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
159_V	175_D	4.189	1.00
55_E	80_R	3.748	1.00
131_G	183_T	3.309	1.00
106_A	109_E	3.241	1.00
48_A	79_D	3.210	1.00
70_I	81_A	3.166	1.00
148_D	163_R	3.007	1.00
211_S	214_D	2.958	1.00
110_D	210_K	2.957	1.00
58_A	73_A	2.800	1.00
43_E	46_Q	2.638	1.00
80_R	208_A	2.610	1.00
143_A	176_V	2.409	1.00
2_K	55_E	2.405	1.00
256_D	260_D	2.373	1.00
118_S	134_L	2.327	1.00
74_L	81_A	2.300	1.00
43_E	189_N	2.234	1.00
146_V	162_V	2.110	1.00
49_E	192_R	2.098	1.00
4_L	108_V	2.097	1.00
42_E	192_R	2.091	1.00
33_L	69_T	2.081	1.00
146_V	182_L	2.012	1.00
160_A	176_V	1.978	1.00
176_V	180_A	1.972	1.00
161_S	175_D	1.963	1.00
105_A	109_E	1.963	1.00
41_V	78_A	1.963	1.00
6_T	118_S	1.919	1.00
57_V	82_V	1.899	1.00
116_V	140_V	1.829	1.00
84_V	103_L	1.784	1.00
150_D	161_S	1.762	1.00
245_G	253_G	1.758	1.00
67_E	71_R	1.726	1.00
164_R	171_E	1.725	1.00
115_L	180_A	1.724	1.00
241_E	257_V	1.710	1.00
34_N	37_D	1.704	1.00
57_V	80_R	1.696	1.00
101_A	137_T	1.689	1.00
64_E	85_W	1.687	1.00
121_Q	126_S	1.673	1.00
110_D	208_A	1.659	1.00
60_T	66_A	1.639	1.00
253_G	256_D	1.639	1.00
4_L	113_P	1.631	1.00
160_A	178_L	1.629	1.00
108_V	116_V	1.585	1.00
184_I	188_I	1.573	1.00
58_A	78_A	1.569	1.00
56_V	78_A	1.543	1.00
163_R	172_E	1.509	1.00
195_S	198_G	1.494	1.00
84_V	107_V	1.493	1.00
59_V	107_V	1.493	1.00
151_T	160_A	1.480	1.00
85_W	209_P	1.456	1.00
135_A	142_W	1.441	1.00
63_P	66_A	1.414	1.00
47_L	51_G	1.399	1.00
88_A	213_D	1.377	1.00
82_V	107_V	1.366	1.00
57_V	113_P	1.356	1.00
92_T	103_L	1.353	1.00
244_E	253_G	1.345	1.00
241_E	253_G	1.340	1.00
158_G	177_E	1.339	1.00
2_K	57_V	1.313	1.00
44_A	56_V	1.299	1.00
150_D	156_D	1.293	1.00
159_V	177_E	1.288	1.00
83_R	209_P	1.273	1.00
67_E	209_P	1.272	1.00
110_D	215_L	1.254	1.00
50_A	150_D	1.237	1.00
58_A	70_I	1.231	1.00
140_V	181_V	1.220	1.00
74_L	205_K	1.201	0.99
41_V	76_K	1.193	0.99
147_N	163_R	1.189	0.99
25_E	28_Y	1.188	0.99
43_E	188_I	1.176	0.99
104_L	134_L	1.169	0.99
210_K	215_L	1.168	0.99
156_D	161_S	1.165	0.99
252_S	255_A	1.160	0.99
39_Y	189_N	1.157	0.99
99_T	224_S	1.137	0.99
60_T	83_R	1.136	0.99
197_R	201_Q	1.135	0.99
122_A	125_D	1.134	0.99
33_L	73_A	1.131	0.99
45_V	198_G	1.126	0.99
43_E	149_L	1.119	0.99
105_A	138_L	1.101	0.99
85_W	211_S	1.100	0.99
82_V	210_K	1.094	0.99
150_D	163_R	1.093	0.99
102_R	106_A	1.090	0.99
260_D	263_V	1.080	0.99
2_K	112_D	1.077	0.99
102_R	137_T	1.072	0.99
117_F	182_L	1.065	0.99
143_A	162_V	1.062	0.99
4_L	59_V	1.061	0.99
48_A	54_V	1.053	0.99
114_E	158_G	1.053	0.99
45_V	76_K	1.053	0.99
151_T	156_D	1.046	0.99
212_L	219_A	1.036	0.98
161_S	172_E	1.035	0.98
199_I	205_K	1.035	0.98
108_V	134_L	1.034	0.98
257_V	260_D	1.031	0.98
7_V	73_A	1.019	0.98
36_W	120_V	1.012	0.98
156_D	159_V	1.002	0.98
132_I	142_W	1.002	0.98
212_L	217_L	0.997	0.98
251_A	255_A	0.996	0.98
42_E	46_Q	0.995	0.98
42_E	191_P	0.992	0.98
51_G	54_V	0.991	0.98
7_V	41_V	0.977	0.98
141_Q	180_A	0.969	0.98
9_E	69_T	0.966	0.97
88_A	212_L	0.965	0.97
218_D	223_A	0.960	0.97
7_V	69_T	0.959	0.97
149_L	162_V	0.954	0.97
38_D	76_K	0.948	0.97
45_V	49_E	0.942	0.97
39_Y	187_G	0.936	0.97
43_E	148_D	0.932	0.97
64_E	67_E	0.929	0.97
197_R	200_R	0.928	0.97
116_V	134_L	0.927	0.97
257_V	261_A	0.926	0.97
109_E	112_D	0.924	0.97
66_A	83_R	0.921	0.97
6_T	134_L	0.915	0.97
233_E	236_T	0.907	0.96
133_A	137_T	0.905	0.96
67_E	83_R	0.899	0.96
151_T	178_L	0.897	0.96
200_R	203_Q	0.894	0.96
117_F	184_I	0.893	0.96
103_L	215_L	0.892	0.96
166_L	169_G	0.892	0.96
61_I	100_K	0.892	0.96
163_R	170_V	0.888	0.96
128_G	132_I	0.887	0.96
101_A	133_A	0.878	0.96
7_V	58_A	0.868	0.95
106_A	110_D	0.866	0.95
218_D	224_S	0.865	0.95
113_P	140_V	0.861	0.95
103_L	212_L	0.858	0.95
106_A	215_L	0.858	0.95
76_K	191_P	0.856	0.95
118_S	181_V	0.853	0.95
38_D	72_M	0.850	0.95
40_A	184_I	0.849	0.95
132_I	144_A	0.848	0.95
13_V	32_D	0.845	0.95
193_Y	199_I	0.842	0.94
67_E	207_I	0.841	0.94
237_E	240_A	0.838	0.94
108_V	113_P	0.836	0.94
151_T	157_E	0.836	0.94
88_A	219_A	0.835	0.94
63_P	83_R	0.835	0.94
6_T	104_L	0.834	0.94
122_A	126_S	0.830	0.94
149_L	160_A	0.829	0.94
105_A	134_L	0.824	0.94
160_A	182_L	0.823	0.94
86_D	212_L	0.822	0.94
80_R	111_E	0.820	0.94
108_V	138_L	0.817	0.94
5_V	56_V	0.816	0.94
11_A	26_S	0.816	0.94
120_V	126_S	0.815	0.93
26_S	63_P	0.809	0.93
72_M	76_K	0.808	0.93
213_D	216_G	0.806	0.93
165_E	187_G	0.806	0.93
136_E	142_W	0.804	0.93
18_E	21_G	0.799	0.93
43_E	50_A	0.797	0.93
99_T	223_A	0.796	0.93
82_V	208_A	0.795	0.93
142_W	181_V	0.780	0.92
6_T	108_V	0.778	0.92
81_A	207_I	0.777	0.92
65_R	68_E	0.775	0.92
120_V	186_T	0.775	0.92
61_I	84_V	0.772	0.92
36_W	39_Y	0.772	0.92
40_A	117_F	0.764	0.91
21_G	232_Y	0.760	0.91
210_K	214_D	0.759	0.91
100_K	125_D	0.754	0.91
76_K	194_A	0.754	0.91
86_D	92_T	0.752	0.90
107_V	210_K	0.751	0.90
228_I	231_M	0.748	0.90
95_L	102_R	0.745	0.90
201_Q	205_K	0.737	0.90
33_L	38_D	0.737	0.90
71_R	203_Q	0.733	0.89
253_G	257_V	0.733	0.89
143_A	173_L	0.732	0.89
156_D	175_D	0.730	0.89
46_Q	192_R	0.727	0.89
59_V	104_L	0.723	0.89
120_V	185_Q	0.720	0.88
39_Y	185_Q	0.716	0.88
3_V	56_V	0.715	0.88
32_D	123_N	0.710	0.88
202_A	205_K	0.707	0.88
127_F	226_L	0.706	0.87
34_N	123_N	0.705	0.87
49_E	54_V	0.703	0.87
33_L	72_M	0.698	0.87
44_A	117_F	0.692	0.86
23_E	228_I	0.689	0.86
134_L	181_V	0.689	0.86
41_V	58_A	0.686	0.86
115_L	182_L	0.684	0.86
115_L	160_A	0.681	0.85
5_V	40_A	0.680	0.85
4_L	111_E	0.680	0.85
123_N	126_S	0.678	0.85
46_Q	49_E	0.678	0.85
252_S	256_D	0.672	0.85
37_D	127_F	0.672	0.85
143_A	160_A	0.671	0.85
84_V	215_L	0.671	0.85
218_D	225_S	0.671	0.85
70_I	83_R	0.668	0.84
106_A	216_G	0.665	0.84
113_P	116_V	0.664	0.84
109_E	139_G	0.659	0.84
224_S	228_I	0.656	0.83
118_S	131_G	0.652	0.83
5_V	44_A	0.650	0.83
12_A	32_D	0.645	0.82
94_L	133_A	0.645	0.82
117_F	149_L	0.645	0.82
37_D	125_D	0.644	0.82
9_E	31_Y	0.644	0.82
245_G	251_A	0.642	0.82
70_I	207_I	0.640	0.82
149_L	182_L	0.640	0.82
42_E	49_E	0.638	0.82
135_A	181_V	0.637	0.81
18_E	25_E	0.636	0.81
227_D	230_A	0.636	0.81
31_Y	65_R	0.634	0.81
235_E	238_S	0.633	0.81
148_D	172_E	0.628	0.81
13_V	17_F	0.628	0.81
122_A	127_F	0.626	0.80
108_V	111_E	0.626	0.80
241_E	261_A	0.626	0.80
36_W	126_S	0.621	0.80
243_I	253_G	0.621	0.80
200_R	204_S	0.620	0.80
196_L	203_Q	0.617	0.79
52_D	151_T	0.614	0.79
165_E	185_Q	0.611	0.79
120_V	145_V	0.611	0.79
41_V	45_V	0.610	0.79
8_K	60_T	0.608	0.78
60_T	70_I	0.608	0.78
47_L	115_L	0.607	0.78
25_E	29_L	0.607	0.78
86_D	91_E	0.606	0.78
37_D	69_T	0.603	0.78
20_S	23_E	0.603	0.78
145_V	185_Q	0.602	0.78
162_V	180_A	0.598	0.77
75_A	198_G	0.597	0.77
141_Q	176_V	0.592	0.77
12_A	30_D	0.592	0.77
95_L	225_S	0.590	0.76
108_V	181_V	0.586	0.76
95_L	99_T	0.583	0.75
62_G	73_A	0.582	0.75
162_V	172_E	0.577	0.75
75_A	202_A	0.576	0.75
3_V	6_T	0.576	0.75
146_V	149_L	0.575	0.75
109_E	138_L	0.573	0.74
108_V	140_V	0.571	0.74
121_Q	234_P	0.570	0.74
61_I	104_L	0.569	0.74
57_V	111_E	0.568	0.74
107_V	111_E	0.568	0.74
164_R	173_L	0.567	0.73
71_R	206_E	0.566	0.73
257_V	262_G	0.563	0.73
21_G	25_E	0.563	0.73
105_A	137_T	0.562	0.73
11_A	29_L	0.562	0.73
61_I	95_L	0.561	0.73
47_L	54_V	0.561	0.73
3_V	117_F	0.561	0.73
121_Q	128_G	0.560	0.73
103_L	107_V	0.560	0.73
132_I	183_T	0.558	0.72
9_E	65_R	0.558	0.72
239_D	242_Y	0.555	0.72
39_Y	165_E	0.552	0.72
50_A	151_T	0.551	0.71
23_E	26_S	0.550	0.71
147_N	165_E	0.550	0.71
41_V	184_I	0.549	0.71
115_L	178_L	0.548	0.71
22_T	26_S	0.545	0.71
110_D	214_D	0.544	0.70
94_L	127_F	0.540	0.70
39_Y	186_T	0.539	0.70
223_A	230_A	0.539	0.70
2_K	113_P	0.534	0.69
71_R	207_I	0.533	0.69
15_D	29_L	0.532	0.69
35_E	123_N	0.532	0.69
206_E	256_D	0.531	0.69
33_L	41_V	0.531	0.69
150_D	172_E	0.530	0.68
127_F	224_S	0.530	0.68
94_L	125_D	0.530	0.68
9_E	62_G	0.530	0.68
126_S	142_W	0.529	0.68
212_L	216_G	0.528	0.68
145_V	164_R	0.527	0.68
83_R	207_I	0.527	0.68
41_V	73_A	0.526	0.68
232_Y	235_E	0.523	0.67
120_V	187_G	0.523	0.67
65_R	69_T	0.521	0.67
79_D	205_K	0.520	0.67
35_E	120_V	0.520	0.67
129_A	133_A	0.518	0.67
100_K	127_F	0.518	0.67
176_V	182_L	0.518	0.67
76_K	204_S	0.516	0.66
23_E	230_A	0.511	0.66
73_A	78_A	0.511	0.66
206_E	209_P	0.509	0.65
128_G	145_V	0.509	0.65
40_A	119_G	0.508	0.65
74_L	207_I	0.507	0.65
164_R	167_E	0.506	0.65
201_Q	204_S	0.505	0.65
45_V	56_V	0.504	0.65
61_I	103_L	0.503	0.64
190_E	199_I	0.502	0.64
26_S	85_W	0.502	0.64
64_E	83_R	0.501	0.64
80_R	205_K	0.501	0.64
99_T	218_D	0.500	0.64

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4l2iB	1	0.9624	100	0.197	Contact Map
1o97C	1	0.906	100	0.201	Contact Map
1efpB	1	0.9098	100	0.23	Contact Map
1efvB	1	0.9323	100	0.25	Contact Map
3ih5A	6	0.7444	100	0.633	Contact Map
4l2iA	1	0.8722	100	0.638	Contact Map
1o97D	1	0.812	100	0.645	Contact Map
1efvA	1	0.8045	99.9	0.683	Contact Map
1efpA	1	0.7857	99.9	0.691	Contact Map
3fetA	2	0.6128	99.9	0.7	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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