Q9HN95 - HALSA - GREMLIN Contacts

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Q9HN95 - Cytochrome c oxidase subunit I

UniProt:	Q9HN95	Sequences: MVVGTTLAAITILNGFAPELPFGSANVLYTFYPPLQAHPAFYVGAALLIVGSWIVGADYFLTYRAWRADNPDERIPLQTFMVLATFVMWYLSSAGVAVEVVAFLIPWSMGWISQVDPLLTRTLFWYFGHPVVYFWLLPAYLAWYTILPKLAGGKLFSDPLARVVFVLFVLLSTPVGFHHQYTDPGIAEGFKFIAMTNTFMLLLPSLLTAFTVVASLEHGARQRGGSGYIGWLRALPWGKPSFSAMALAGLVFAAGGFSGMINAGMNINYLIHNTIWVPGHFHLTVGTAFALTMMGVAYWLVPQITGKRLQHRTLAAIQPFVWVIGMTLMSNAMHRGGLAGLPRRTAKPLFRGEGAAPFDPVVGTISEMQLQIAIGGTLLFVSLALFLAVMVGTWLSRPGMGRLSVNGSIPSALSGPADSPRILDNLKVWTAIAVVLVIIAYGLPLYGMLADGVLAPGSPGFPV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	463 (384)
Sequences:	4350 (1456)
Seq/√Len:	74.3

ECOLI - CYOB
BACSU - QOX1 COX1
HALSA - Q9HN95 COX1
SULSO - Q981A5 Q97UN0 Q97VG9 Q97XY4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
333_M	372_I	4.992	1.00
146_I	295_G	4.346	1.00
301_V	393_T	4.273	1.00
139_A	292_T	4.023	1.00
262_N	277_V	3.763	1.00
239_K	315_A	3.737	1.00
321_V	382_S	3.722	1.00
71_P	74_R	3.714	1.00
81_M	165_F	3.630	1.00
239_K	312_R	3.559	1.00
158_D	162_R	3.383	1.00
84_A	169_V	3.321	1.00
151_A	216_L	3.313	1.00
142_A	296_V	3.132	1.00
63_Y	83_L	3.095	1.00
77_L	155_L	2.970	1.00
283_L	327_T	2.733	1.00
328_L	375_G	2.695	1.00
72_D	75_I	2.694	1.00
64_R	72_D	2.616	1.00
31_F	120_T	2.575	1.00
312_R	316_A	2.490	1.00
298_Y	318_Q	2.480	1.00
38_H	41_F	2.448	1.00
171_L	201_L	2.441	1.00
216_L	241_S	2.431	1.00
325_G	378_L	2.427	1.00
149_K	299_W	2.379	1.00
150_L	299_W	2.360	1.00
147_L	249_G	2.265	1.00
313_T	317_I	2.214	1.00
366_S	370_L	2.213	1.00
182_T	272_H	2.187	1.00
127_F	131_V	2.078	1.00
314_L	385_L	2.069	1.00
246_A	323_V	2.062	1.00
294_M	386_F	2.049	1.00
202_L	260_M	2.010	1.00
314_L	388_A	2.003	1.00
328_L	371_Q	1.955	1.00
84_A	166_V	1.927	1.00
261_I	276_W	1.925	1.00
106_P	111_W	1.911	1.00
321_V	385_L	1.910	1.00
92_S	173_T	1.900	1.00
314_L	317_I	1.856	1.00
243_S	318_Q	1.853	1.00
392_G	396_S	1.845	1.00
45_A	100_V	1.838	1.00
374_I	378_L	1.836	1.00
152_G	236_P	1.833	1.00
128_G	131_V	1.813	1.00
318_Q	386_F	1.799	1.00
311_H	392_G	1.790	1.00
318_Q	322_W	1.790	1.00
279_G	334_H	1.776	1.00
136_L	140_Y	1.748	1.00
267_I	271_I	1.736	1.00
140_Y	205_S	1.681	1.00
392_G	398_P	1.661	1.00
148_P	155_L	1.651	1.00
336_G	368_M	1.640	1.00
303_Q	416_P	1.632	1.00
142_A	300_L	1.625	1.00
307_K	397_R	1.617	1.00
27_V	36_Q	1.614	0.99
30_T	124_F	1.600	0.99
121_R	273_N	1.599	0.99
235_L	241_S	1.598	0.99
325_G	375_G	1.584	0.99
377_T	381_V	1.580	0.99
318_Q	382_S	1.561	0.99
142_A	146_I	1.560	0.99
298_Y	315_A	1.553	0.99
150_L	240_P	1.551	0.99
144_Y	212_V	1.538	0.99
63_Y	79_T	1.537	0.99
331_N	335_R	1.532	0.99
388_A	392_G	1.528	0.99
294_M	318_Q	1.513	0.99
146_I	296_V	1.510	0.99
414_S	418_D	1.488	0.99
216_L	245_M	1.484	0.99
244_A	295_G	1.484	0.99
297_A	386_F	1.479	0.99
89_W	93_S	1.469	0.99
64_R	83_L	1.468	0.99
161_A	165_F	1.468	0.99
56_G	86_F	1.451	0.99
251_V	327_T	1.448	0.99
105_I	111_W	1.438	0.99
388_A	391_V	1.435	0.99
414_S	422_I	1.403	0.99
327_T	331_N	1.398	0.99
37_A	41_F	1.397	0.99
147_L	216_L	1.397	0.99
95_G	126_Y	1.384	0.98
63_Y	75_I	1.384	0.98
283_L	331_N	1.381	0.98
318_Q	383_L	1.375	0.98
56_G	90_Y	1.375	0.98
60_F	83_L	1.361	0.98
46_A	101_V	1.352	0.98
67_R	70_N	1.346	0.98
135_W	285_V	1.343	0.98
27_V	31_F	1.336	0.98
76_P	79_T	1.332	0.98
243_S	294_M	1.327	0.98
199_F	263_A	1.322	0.98
168_F	208_T	1.315	0.98
268_N	277_V	1.313	0.98
321_V	381_V	1.301	0.98
70_N	74_R	1.299	0.98
64_R	87_V	1.298	0.98
421_R	424_D	1.294	0.98
307_K	393_T	1.289	0.97
60_F	90_Y	1.289	0.97
329_M	379_L	1.286	0.97
99_E	120_T	1.272	0.97
31_F	41_F	1.268	0.97
84_A	165_F	1.264	0.97
33_P	120_T	1.264	0.97
384_A	388_A	1.260	0.97
262_N	271_I	1.256	0.97
329_M	376_G	1.246	0.97
242_F	319_P	1.229	0.97
161_A	164_V	1.227	0.97
292_T	295_G	1.226	0.97
397_R	400_M	1.225	0.97
246_A	319_P	1.223	0.97
146_I	240_P	1.218	0.96
287_T	326_M	1.212	0.96
162_R	165_F	1.208	0.96
335_R	368_M	1.203	0.96
92_S	134_F	1.200	0.96
415_G	419_S	1.199	0.96
333_M	336_G	1.199	0.96
318_Q	385_L	1.192	0.96
125_W	128_G	1.191	0.96
46_A	100_V	1.190	0.96
72_D	83_L	1.183	0.96
133_Y	138_P	1.177	0.96
367_E	371_Q	1.168	0.96
84_A	87_V	1.167	0.95
16_F	19_E	1.152	0.95
318_Q	389_V	1.150	0.95
322_W	379_L	1.148	0.95
239_K	316_A	1.140	0.95
341_L	369_Q	1.136	0.95
297_A	390_M	1.136	0.95
49_I	97_A	1.134	0.95
387_L	391_V	1.130	0.95
67_R	74_R	1.128	0.95
195_M	265_M	1.128	0.95
315_A	389_V	1.125	0.94
240_P	299_W	1.123	0.94
414_S	423_L	1.120	0.94
317_I	385_L	1.117	0.94
260_M	263_A	1.112	0.94
52_S	89_W	1.109	0.94
33_P	103_F	1.100	0.94
198_T	262_N	1.098	0.94
275_I	341_L	1.096	0.94
39_P	107_W	1.088	0.93
78_Q	82_V	1.087	0.93
391_V	395_L	1.070	0.93
150_L	241_S	1.069	0.93
243_S	298_Y	1.069	0.93
332_A	368_M	1.068	0.93
322_W	382_S	1.067	0.93
416_P	419_S	1.066	0.93
146_I	244_A	1.063	0.93
380_F	384_A	1.057	0.92
313_T	316_A	1.057	0.92
132_V	138_P	1.052	0.92
415_G	418_D	1.050	0.92
136_L	289_F	1.049	0.92
58_D	62_T	1.049	0.92
30_T	272_H	1.038	0.92
301_V	305_T	1.035	0.92
131_V	135_W	1.033	0.92
182_T	269_Y	1.023	0.91
342_P	345_T	1.019	0.91
216_L	235_L	1.019	0.91
177_F	186_I	1.017	0.91
130_P	133_Y	1.013	0.91
152_G	406_N	1.011	0.91
25_A	31_F	1.010	0.91
403_L	406_N	1.006	0.90
322_W	383_L	1.006	0.90
75_I	79_T	1.006	0.90
46_A	104_L	1.006	0.90
312_R	315_A	0.994	0.90
148_P	154_K	0.993	0.90
283_L	334_H	0.993	0.90
85_T	134_F	0.992	0.90
403_L	407_G	0.989	0.90
45_A	48_L	0.978	0.89
255_G	284_T	0.978	0.89
19_E	22_F	0.977	0.89
198_T	263_A	0.963	0.88
143_W	244_A	0.963	0.88
407_G	410_P	0.960	0.88
374_I	377_T	0.960	0.88
294_M	383_L	0.959	0.88
144_Y	208_T	0.944	0.87
370_L	374_I	0.933	0.87
242_F	316_A	0.932	0.87
140_Y	212_V	0.928	0.86
31_F	36_Q	0.928	0.86
27_V	38_H	0.923	0.86
369_Q	373_A	0.922	0.86
91_L	173_T	0.918	0.86
181_Y	265_M	0.909	0.85
324_I	378_L	0.900	0.85
118_L	184_P	0.898	0.85
60_F	87_V	0.897	0.85
130_P	138_P	0.894	0.84
172_S	273_N	0.894	0.84
68_A	426_L	0.893	0.84
279_G	333_M	0.893	0.84
325_G	382_S	0.890	0.84
93_S	97_A	0.889	0.84
202_L	208_T	0.887	0.84
238_G	316_A	0.885	0.84
301_V	394_W	0.884	0.84
294_M	322_W	0.879	0.83
164_V	167_L	0.877	0.83
208_T	212_V	0.875	0.83
46_A	97_A	0.874	0.83
135_W	289_F	0.866	0.82
205_S	208_T	0.866	0.82
55_V	99_E	0.865	0.82
59_Y	63_Y	0.865	0.82
305_T	393_T	0.863	0.82
237_W	241_S	0.859	0.82
398_P	401_G	0.858	0.82
150_L	405_V	0.854	0.82
59_Y	82_V	0.854	0.82
216_L	233_R	0.852	0.81
122_T	334_H	0.852	0.81
73_E	163_V	0.841	0.81
33_P	36_Q	0.839	0.80
385_L	388_A	0.836	0.80
244_A	249_G	0.835	0.80
154_K	159_P	0.834	0.80
396_S	399_G	0.832	0.80
42_Y	104_L	0.832	0.80
17_A	371_Q	0.831	0.80
128_G	135_W	0.829	0.80
341_L	350_F	0.829	0.80
127_F	135_W	0.827	0.79
276_W	351_R	0.822	0.79
140_Y	208_T	0.821	0.79
87_V	169_V	0.820	0.79
394_W	397_R	0.819	0.79
155_L	158_D	0.817	0.79
116_D	344_R	0.817	0.79
258_S	334_H	0.815	0.78
242_F	320_F	0.815	0.78
311_H	388_A	0.815	0.78
257_F	260_M	0.808	0.78
140_Y	206_L	0.806	0.78
307_K	394_W	0.803	0.77
212_V	247_L	0.801	0.77
291_L	319_P	0.800	0.77
418_D	423_L	0.797	0.77
184_P	273_N	0.796	0.77
48_L	52_S	0.795	0.77
208_T	211_T	0.794	0.77
307_K	396_S	0.793	0.77
321_V	378_L	0.792	0.76
385_L	389_V	0.791	0.76
136_L	288_A	0.790	0.76
253_A	257_F	0.788	0.76
38_H	231_W	0.785	0.76
191_K	290_A	0.783	0.76
104_L	108_S	0.783	0.76
294_M	298_Y	0.782	0.76
279_G	332_A	0.781	0.75
394_W	398_P	0.780	0.75
53_W	97_A	0.773	0.75
143_W	292_T	0.772	0.75
22_F	25_A	0.771	0.74
31_F	38_H	0.770	0.74
326_M	379_L	0.768	0.74
301_V	310_Q	0.767	0.74
105_I	109_M	0.767	0.74
77_L	342_P	0.764	0.74
143_W	147_L	0.761	0.74
93_S	131_V	0.761	0.74
59_Y	86_F	0.756	0.73
81_M	137_L	0.755	0.73
16_F	22_F	0.755	0.73
275_I	369_Q	0.754	0.73
150_L	238_G	0.753	0.73
180_Q	273_N	0.753	0.73
75_I	158_D	0.751	0.73
101_V	104_L	0.750	0.72
389_V	393_T	0.748	0.72
87_V	101_V	0.747	0.72
178_H	280_H	0.746	0.72
19_E	40_A	0.745	0.72
161_A	211_T	0.745	0.72
239_K	246_A	0.744	0.72
236_P	406_N	0.744	0.72
149_K	405_V	0.744	0.72
301_V	307_K	0.742	0.72
84_A	162_R	0.741	0.72
15_G	19_E	0.735	0.71
129_H	178_H	0.735	0.71
136_L	139_A	0.735	0.71
148_P	404_S	0.735	0.71
112_I	116_D	0.735	0.71
239_K	242_F	0.734	0.71
19_E	38_H	0.733	0.71
25_A	120_T	0.731	0.71
73_E	155_L	0.729	0.70
77_L	161_A	0.726	0.70
191_K	269_Y	0.723	0.70
266_N	285_V	0.723	0.70
73_E	158_D	0.722	0.70
345_T	369_Q	0.720	0.69
171_L	174_P	0.719	0.69
160_L	272_H	0.718	0.69
257_F	287_T	0.717	0.69
69_D	426_L	0.715	0.69
99_E	124_F	0.712	0.68
373_A	377_T	0.712	0.68
176_G	194_A	0.706	0.68
159_P	163_V	0.704	0.68
122_T	180_Q	0.701	0.67
129_H	132_V	0.699	0.67
17_A	20_L	0.697	0.67
67_R	75_I	0.696	0.67
44_G	101_V	0.695	0.67
410_P	429_W	0.695	0.67
402_R	416_P	0.694	0.67
240_P	310_Q	0.693	0.66
93_S	102_A	0.692	0.66
136_L	212_V	0.692	0.66
372_I	375_G	0.685	0.66
27_V	41_F	0.684	0.65
143_W	247_L	0.684	0.65
37_A	40_A	0.683	0.65
161_A	207_L	0.683	0.65
195_M	264_G	0.677	0.65
48_L	93_S	0.675	0.64
109_M	150_L	0.674	0.64
298_Y	389_V	0.674	0.64
56_G	92_S	0.674	0.64
140_Y	164_V	0.673	0.64
121_R	184_P	0.670	0.64
289_F	293_M	0.670	0.64
266_N	271_I	0.669	0.64
202_L	210_F	0.668	0.64
146_I	292_T	0.668	0.64
156_F	211_T	0.668	0.64
122_T	273_N	0.668	0.64
89_W	128_G	0.665	0.63
253_A	288_A	0.665	0.63
177_F	197_N	0.665	0.63
81_M	155_L	0.664	0.63
237_W	245_M	0.663	0.63
139_A	143_W	0.660	0.63
156_F	168_F	0.659	0.63
187_A	191_K	0.659	0.63
124_F	132_V	0.653	0.62
109_M	418_D	0.653	0.62
250_L	254_A	0.652	0.62
277_V	281_F	0.651	0.62
335_R	339_A	0.651	0.62
371_Q	375_G	0.650	0.61
156_F	215_S	0.650	0.61
43_V	101_V	0.648	0.61
147_L	384_A	0.648	0.61
328_L	378_L	0.648	0.61
352_G	366_S	0.647	0.61
240_P	312_R	0.646	0.61
18_P	22_F	0.644	0.61
193_I	197_N	0.644	0.61
140_Y	144_Y	0.644	0.61
400_M	416_P	0.643	0.61
136_L	284_T	0.642	0.61
147_L	244_A	0.642	0.61
306_G	417_A	0.642	0.61
404_S	407_G	0.640	0.60
311_H	317_I	0.639	0.60
88_M	198_T	0.639	0.60
239_K	243_S	0.638	0.60
68_A	74_R	0.635	0.60
184_P	205_S	0.634	0.60
50_V	54_I	0.634	0.60
400_M	404_S	0.633	0.59
51_G	116_D	0.633	0.59
49_I	208_T	0.630	0.59
118_L	122_T	0.626	0.59
106_P	115_V	0.625	0.58
203_L	207_L	0.625	0.58
285_V	290_A	0.622	0.58
19_E	23_G	0.622	0.58
398_P	402_R	0.622	0.58
46_A	49_I	0.621	0.58
15_G	44_G	0.621	0.58
271_I	277_V	0.621	0.58
182_T	291_L	0.620	0.58
246_A	291_L	0.620	0.58
285_V	289_F	0.619	0.58
232_L	236_P	0.616	0.57
67_R	105_I	0.616	0.57
89_W	127_F	0.616	0.57
109_M	234_A	0.614	0.57
130_P	175_V	0.614	0.57
87_V	167_L	0.613	0.57
98_V	102_A	0.613	0.57
251_V	323_V	0.612	0.57
93_S	127_F	0.612	0.57
36_Q	103_F	0.611	0.57
337_G	340_G	0.610	0.57
324_I	384_A	0.608	0.56
284_T	288_A	0.608	0.56
95_G	99_E	0.606	0.56
423_L	427_K	0.604	0.56
74_R	429_W	0.604	0.56
424_D	428_V	0.601	0.56
243_S	319_P	0.601	0.56
311_H	398_P	0.599	0.55
387_L	420_P	0.599	0.55
133_Y	175_V	0.599	0.55
26_N	287_T	0.598	0.55
117_P	121_R	0.598	0.55
49_I	100_V	0.598	0.55
302_P	400_M	0.596	0.55
167_L	170_L	0.596	0.55
185_G	252_F	0.596	0.55
209_A	284_T	0.594	0.55
91_L	95_G	0.593	0.55
423_L	426_L	0.591	0.54
350_F	365_I	0.591	0.54
261_I	267_I	0.590	0.54
311_H	314_L	0.589	0.54
144_Y	202_L	0.589	0.54
412_A	417_A	0.588	0.54
73_E	159_P	0.587	0.54
67_R	296_V	0.587	0.54
118_L	273_N	0.585	0.54
196_T	267_I	0.584	0.53
93_S	162_R	0.582	0.53
88_M	135_W	0.582	0.53
100_V	104_L	0.581	0.53
18_P	21_P	0.578	0.53
64_R	231_W	0.577	0.53
150_L	422_I	0.575	0.52
48_L	51_G	0.574	0.52
65_A	279_G	0.574	0.52
135_W	162_R	0.574	0.52
42_Y	120_T	0.573	0.52
303_Q	412_A	0.573	0.52
136_L	208_T	0.573	0.52
69_D	158_D	0.572	0.52
102_A	368_M	0.571	0.52
99_E	142_A	0.570	0.52
202_L	205_S	0.569	0.52
205_S	211_T	0.569	0.52
171_L	204_P	0.568	0.51
182_T	374_I	0.568	0.51
310_Q	397_R	0.567	0.51
181_Y	275_I	0.567	0.51
162_R	406_N	0.567	0.51
86_F	134_F	0.567	0.51
106_P	201_L	0.564	0.51
374_I	399_G	0.563	0.51
21_P	25_A	0.562	0.51
279_G	326_M	0.562	0.51
316_A	319_P	0.562	0.51
392_G	395_L	0.560	0.50
84_A	127_F	0.560	0.50
285_V	288_A	0.559	0.50
52_S	116_D	0.559	0.50
205_S	209_A	0.557	0.50
73_E	170_L	0.556	0.50
81_M	160_L	0.556	0.50
140_Y	168_F	0.556	0.50
251_V	258_S	0.554	0.50
181_Y	195_M	0.554	0.50
414_S	417_A	0.553	0.50
261_I	271_I	0.552	0.49
396_S	400_M	0.551	0.49
243_S	315_A	0.551	0.49
89_W	131_V	0.551	0.49
425_N	428_V	0.550	0.49
415_G	423_L	0.549	0.49
119_L	123_L	0.549	0.49
302_P	314_L	0.548	0.49
293_M	297_A	0.548	0.49
51_G	100_V	0.547	0.49
397_R	405_V	0.547	0.49
121_R	124_F	0.547	0.49
335_R	338_L	0.546	0.49
96_V	181_Y	0.546	0.49
233_R	315_A	0.545	0.49
199_F	341_L	0.543	0.48
189_G	193_I	0.543	0.48
27_V	33_P	0.540	0.48
399_G	415_G	0.539	0.48
136_L	141_L	0.538	0.48
60_F	86_F	0.537	0.48
353_E	380_F	0.534	0.47
414_S	419_S	0.534	0.47
52_S	165_F	0.534	0.47
23_G	167_L	0.533	0.47
413_L	424_D	0.533	0.47
70_N	76_P	0.532	0.47
21_P	67_R	0.532	0.47
67_R	72_D	0.532	0.47
154_K	365_I	0.531	0.47
161_A	208_T	0.531	0.47
102_A	106_P	0.530	0.47
129_H	280_H	0.529	0.47
160_L	164_V	0.529	0.47
301_V	304_I	0.529	0.47
233_R	405_V	0.528	0.46
405_V	416_P	0.527	0.46
389_V	392_G	0.527	0.46
39_P	108_S	0.527	0.46
79_T	83_L	0.527	0.46
391_V	400_M	0.527	0.46
58_D	208_T	0.525	0.46
420_P	423_L	0.525	0.46
324_I	328_L	0.525	0.46
156_F	208_T	0.523	0.46
109_M	335_R	0.522	0.46
30_T	198_T	0.522	0.46
419_S	424_D	0.522	0.46
345_T	350_F	0.521	0.46
233_R	298_Y	0.521	0.46
33_P	104_L	0.520	0.45
272_H	305_T	0.520	0.45
327_T	334_H	0.520	0.45
156_F	336_G	0.520	0.45
189_G	192_F	0.520	0.45
52_S	198_T	0.519	0.45
77_L	272_H	0.516	0.45
16_F	21_P	0.515	0.45
380_F	400_M	0.515	0.45
68_A	71_P	0.514	0.45
43_V	112_I	0.514	0.45
27_V	365_I	0.512	0.44
198_T	396_S	0.512	0.44
240_P	298_Y	0.512	0.44
75_I	83_L	0.511	0.44
17_A	40_A	0.511	0.44
397_R	401_G	0.511	0.44
381_V	385_L	0.511	0.44
43_V	47_L	0.510	0.44
322_W	391_V	0.510	0.44
172_S	287_T	0.510	0.44
133_Y	137_L	0.509	0.44
114_Q	185_G	0.508	0.44
274_T	429_W	0.507	0.44
140_Y	143_W	0.506	0.44
414_S	420_P	0.506	0.44
82_V	86_F	0.506	0.44
49_I	58_D	0.505	0.44
67_R	412_A	0.505	0.44
264_G	287_T	0.504	0.43
207_L	311_H	0.504	0.43
182_T	281_F	0.504	0.43
149_K	233_R	0.503	0.43
314_L	389_V	0.502	0.43
170_L	174_P	0.501	0.43
32_Y	252_F	0.500	0.43
317_I	388_A	0.500	0.43
187_A	287_T	0.500	0.43
136_L	144_Y	0.500	0.43
93_S	128_G	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1fftA	1	0.8488	100	0.209	Contact Map
3s8fA	1	0.9719	100	0.223	Contact Map
2yevA	1	0.9417	100	0.225	Contact Map
2gsmA	1	0.8488	100	0.241	Contact Map
1v54A	1	0.8683	100	0.251	Contact Map
3ayfA	2	0.784	100	0.419	Contact Map
3mk7A	1	0.7775	100	0.425	Contact Map
3wfdB	1	0.7451	100	0.451	Contact Map
3pcvA	3	0.3045	4.6	0.984	Contact Map
4px7A	1	0.4449	4.3	0.984	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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