Q9HMW0 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q9HMW0 - Oligopeptide ABC transporter ATP-binding

UniProt:	Q9HMW0	Sequences: MSKQIVNTESDAAESLMRVDGLKKHYPITEGVLRTEVGRVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESVLRLTDPTAGSVYFDGEDVTAYDDTALKRFRREAQMIFQNPDSSFDPRMTTGESVAEPLKIHGVGPRSRRLEIARDLLERVGMSGEDAARYPHELSGGQKQRVALARALVVNPRLIVADEPVSALDVSVQAEVLTLLNDIQAEFNLGVLFISHDMGVVREVCDRVAVMYLGEIVEMGRTEDVFNDPEHPYTRALLRSIPTVGVESRGTDAGLRGEVPPPSDPPTGCNFHTRCPEVIQPDGYDFEQAHWRGVMNLRVAVERHGVDVAGLRAFVGVEDDASVSPADADAMKAELRREHDIPETLTDPSAEATLEAALDDIVRGDVEDGRAVLAEEFETVCEGESPPLDEDGTGRPTACHRDGAAARGGDD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	440 (344)
Sequences:	643 (547)
Seq/√Len:	29.5

ECOLI - RBSA PROV POTG POTA MALK ARAG CYSA FBPC MACB UGPC YCJV DPPF METN OPPD YDCT OPPF DDPD GSIA DPPD MDLB SAPD MODC CYDC MDLA LSRA YEHX YADG CYDD MSBA DDPF YTFR YOJI MLAF NIKE FEPC SAPF HISP YHES YPHE FHUC YECC YHDZ GLNQ TAUB PHNK SSUB FECE YEJF PHNC LPTB XYLG UUP GLTL LIVG PSTB ALSA LOLD ARTP SUFC MGLA MODF THIQ LIVF FTSE FETA ZNUC YBBA BTUD NIKD YDDA PHNL ETTA CCMA YNJD
BACSU - YVRA OPUAA OPUCA TAGH OPUBA MSMX OPPD YHEH YURJ METN DPPD SUNT APPD RBSA APPF YKFD YFIC YGAD YFIB YFIL YKNU BMRA YKNV YCBN YHCH YDBJ CYDD CYDC YHEI YXLF OPPF YWJA YHAQ YVFR YKOD YTRB ECFA1 YKPA YUSV YFMF PSTB1 FHUC YCLP YFMM TCYN YLMA PSTB2 BCEA YVCR YTLC FTSE YXDL YJKB TCYC YFMR ARTM ECSA SUFC SKFE GLNQ NATA YXEO ECFA2 YDIF ALBC YVRO SSUB MNTB YKNY YTHP YUFO YCLH ZNUC YHCG YYBJ EXPZ YTRE YYDI
HALSA - Q9HMW0 Q9HMX3 BTUDA Q9HHQ5 Q9HNZ9 Q9HR06 Q9HMX2 Q9HMT3 Q9HSQ7 PSTB2 Q9HMG1 Q9HMI4 Q9HRJ6 Q9HMU8 Q9HRH8 Q9HMG6 Q9HHM2 PHNC Q9HRV7 Q9HNY3 PSTB1 Y2317 Y1631 Q9HRZ9 Q9HR96 Q9HHR7 Q9HR21 Q9HT03 Q9HMC1 Q9HS04 Q9HQA8
SULSO - Q97UJ9 Q97UF2 Q97VF5 Q97YY4 Q97UY8 Q97UH3 Q7LX64 Q97VK8 Q97VK9 Q97YP3 Q97ZC0 Q97YP7 Q97VC1 Q97VF4 Q97VH6 Q97YP8 Q97YK2 Q97X18 Q97UD4 Q97YQ7 Q980W0 PSTB Q97UH4 Q97W42 Q97Z03 Q97U54 Q7LXM4 Q97V01 Y2030 Q7LY07 Q97V00 Y1893 Q97VM2 Q97VY4 Q97UG5 Q97Z56 Q7LX80 Q97YP4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
57_G	234_C	7.090	1.00
167_L	175_V	5.860	1.00
54_E	236_R	5.675	1.00
21_G	45_G	5.564	1.00
249_G	254_V	4.971	1.00
19_V	48_F	4.446	1.00
20_D	83_S	3.848	1.00
18_R	49_E	3.716	1.00
109_I	190_A	3.250	1.00
126_S	179_R	3.194	1.00
21_G	47_S	3.069	1.00
127_V	182_V	2.890	1.00
174_R	197_L	2.822	1.00
19_V	22_L	2.790	1.00
107_Q	185_P	2.764	1.00
337_V	340_L	2.674	1.00
192_E	225_H	2.628	1.00
62_S	197_L	2.583	0.99
105_E	186_R	2.577	0.99
56_L	238_A	2.549	0.99
238_A	245_I	2.522	0.99
59_V	239_V	2.504	0.99
179_R	195_S	2.442	0.99
70_A	189_V	2.330	0.99
90_D	93_A	2.250	0.99
83_S	90_D	2.224	0.98
171_Q	179_R	2.116	0.98
109_I	173_Q	2.110	0.98
23_K	45_G	2.108	0.98
202_Q	226_D	2.103	0.98
206_L	229_V	1.877	0.95
62_S	196_A	1.783	0.94
149_L	182_V	1.758	0.94
66_K	191_D	1.756	0.94
311_D	316_E	1.754	0.93
325_N	329_A	1.749	0.93
24_K	72_S	1.744	0.93
50_V	221_L	1.739	0.93
62_S	192_E	1.738	0.93
53_G	219_G	1.736	0.93
173_Q	223_I	1.723	0.93
187_L	219_G	1.688	0.92
75_R	78_D	1.660	0.91
70_A	223_I	1.658	0.91
66_K	192_E	1.639	0.91
202_Q	229_V	1.599	0.90
349_D	353_S	1.591	0.90
126_S	195_S	1.582	0.89
168_S	198_D	1.555	0.88
147_R	157_G	1.546	0.88
50_V	187_L	1.523	0.87
172_K	204_E	1.511	0.87
205_V	208_L	1.498	0.86
59_V	230_V	1.465	0.85
26_Y	68_T	1.463	0.85
26_Y	77_T	1.459	0.85
59_V	107_Q	1.443	0.84
58_I	187_L	1.435	0.84
159_D	171_Q	1.434	0.84
286_G	289_P	1.434	0.84
334_G	348_D	1.431	0.84
75_R	103_R	1.430	0.84
107_Q	194_V	1.429	0.84
17_M	187_L	1.411	0.83
50_V	56_L	1.407	0.83
51_R	54_E	1.402	0.83
177_L	224_S	1.398	0.82
295_P	298_C	1.391	0.82
126_S	224_S	1.390	0.82
364_L	368_H	1.388	0.82
58_I	238_A	1.370	0.81
173_Q	196_A	1.368	0.81
122_T	125_E	1.367	0.81
150_L	153_V	1.366	0.81
58_I	221_L	1.361	0.81
110_F	166_E	1.358	0.80
226_D	229_V	1.343	0.80
161_A	164_P	1.340	0.80
66_K	111_Q	1.330	0.79
111_Q	191_D	1.325	0.79
289_P	300_F	1.318	0.78
66_K	225_H	1.314	0.78
121_M	125_E	1.296	0.77
169_G	174_R	1.276	0.76
355_A	359_A	1.267	0.76
365_R	368_H	1.265	0.75
62_S	173_Q	1.264	0.75
171_Q	195_S	1.259	0.75
356_D	362_A	1.259	0.75
73_V	139_R	1.258	0.75
298_C	303_R	1.251	0.75
265_A	269_S	1.249	0.75
359_A	362_A	1.242	0.74
64_C	122_T	1.237	0.74
328_V	332_R	1.237	0.74
27_P	37_V	1.234	0.74
60_G	63_G	1.224	0.73
46_V	67_S	1.222	0.73
224_S	234_C	1.217	0.73
42_A	80_T	1.216	0.72
117_F	192_E	1.206	0.72
361_K	368_H	1.204	0.72
173_Q	227_M	1.201	0.72
153_V	171_Q	1.198	0.71
26_Y	192_E	1.194	0.71
72_S	201_V	1.183	0.70
187_L	221_L	1.180	0.70
67_S	235_D	1.177	0.70
335_V	338_A	1.169	0.69
249_G	253_D	1.163	0.69
171_Q	175_V	1.160	0.69
340_L	343_F	1.156	0.69
326_L	331_E	1.152	0.68
298_C	304_C	1.152	0.68
200_S	242_L	1.151	0.68
109_I	223_I	1.148	0.68
224_S	230_V	1.147	0.68
67_S	233_V	1.144	0.68
201_V	205_V	1.144	0.68
171_Q	231_R	1.140	0.67
110_F	164_P	1.127	0.67
152_R	211_D	1.121	0.66
356_D	360_M	1.121	0.66
206_L	226_D	1.119	0.66
130_P	179_R	1.118	0.66
62_S	174_R	1.116	0.66
46_V	245_I	1.114	0.66
62_S	166_E	1.113	0.66
75_R	99_L	1.107	0.65
341_R	344_V	1.103	0.65
87_D	105_E	1.102	0.65
328_V	331_E	1.102	0.65
60_G	66_K	1.098	0.64
51_R	236_R	1.097	0.64
293_D	297_G	1.089	0.64
188_I	194_V	1.083	0.63
145_I	148_D	1.082	0.63
86_F	187_L	1.080	0.63
354_P	357_A	1.074	0.63
182_V	192_E	1.072	0.63
22_L	43_V	1.071	0.63
185_P	192_E	1.070	0.62
314_D	320_W	1.069	0.62
311_D	318_A	1.063	0.62
173_Q	247_E	1.063	0.62
290_P	302_T	1.050	0.61
176_A	179_R	1.042	0.60
60_G	65_G	1.041	0.60
62_S	164_P	1.037	0.60
349_D	354_P	1.036	0.60
169_G	198_D	1.036	0.60
325_N	328_V	1.036	0.60
24_K	155_M	1.034	0.60
43_V	69_V	1.031	0.60
202_Q	230_V	1.028	0.59
327_R	336_D	1.025	0.59
227_M	230_V	1.017	0.58
332_R	337_V	1.016	0.58
221_L	284_L	1.012	0.58
164_P	196_A	1.012	0.58
145_I	182_V	1.006	0.58
84_V	220_V	1.006	0.58
164_P	173_Q	1.006	0.58
213_Q	220_V	1.000	0.57
359_A	363_E	0.998	0.57
23_K	81_A	0.989	0.56
125_E	190_A	0.988	0.56
102_F	106_A	0.986	0.56
234_C	237_V	0.985	0.56
308_I	311_D	0.983	0.56
172_K	272_T	0.979	0.56
107_Q	183_V	0.972	0.55
57_G	199_V	0.972	0.55
306_E	341_R	0.971	0.55
250_R	253_D	0.970	0.55
46_V	69_V	0.969	0.55
307_V	324_M	0.969	0.55
316_E	344_V	0.969	0.55
41_R	44_D	0.961	0.54
145_I	184_N	0.960	0.54
41_R	244_E	0.958	0.54
349_D	352_V	0.957	0.54
174_R	196_A	0.953	0.53
124_G	127_V	0.953	0.53
328_V	334_G	0.949	0.53
14_E	52_A	0.943	0.53
65_G	198_D	0.940	0.52
202_Q	239_V	0.939	0.52
174_R	178_A	0.938	0.52
62_S	109_I	0.937	0.52
324_M	328_V	0.933	0.52
263_T	266_L	0.929	0.52
341_R	345_G	0.927	0.51
51_R	87_D	0.927	0.51
59_V	229_V	0.925	0.51
204_E	209_L	0.918	0.51
18_R	85_Y	0.914	0.50
39_R	146_A	0.913	0.50
50_V	219_G	0.912	0.50
59_V	247_E	0.906	0.50
342_A	346_V	0.905	0.50
311_D	329_A	0.904	0.50
295_P	303_R	0.903	0.50
148_D	152_R	0.900	0.49
353_S	356_D	0.893	0.49
326_L	330_V	0.890	0.49
65_G	191_D	0.889	0.48
55_T	196_A	0.888	0.48
164_P	195_S	0.888	0.48
169_G	176_A	0.884	0.48
75_R	84_V	0.883	0.48
300_F	303_R	0.879	0.48
21_G	81_A	0.876	0.47
138_P	141_R	0.875	0.47
312_G	319_H	0.875	0.47
186_R	218_L	0.874	0.47
99_L	103_R	0.873	0.47
343_F	350_A	0.873	0.47
346_V	353_S	0.872	0.47
74_L	201_V	0.871	0.47
329_A	332_R	0.871	0.47
193_P	225_H	0.866	0.47
317_Q	325_N	0.865	0.47
217_N	268_R	0.861	0.46
357_A	362_A	0.858	0.46
286_G	291_P	0.856	0.46
64_C	175_V	0.855	0.46
166_E	196_A	0.853	0.46
340_L	346_V	0.851	0.45
263_T	270_I	0.849	0.45
227_M	234_C	0.847	0.45
332_R	335_V	0.846	0.45
358_D	367_E	0.845	0.45
52_A	186_R	0.845	0.45
286_G	298_C	0.840	0.45
112_N	167_L	0.839	0.45
72_S	77_T	0.839	0.45
312_G	315_F	0.833	0.44
311_D	330_V	0.832	0.44
73_V	249_G	0.830	0.44
126_S	183_V	0.829	0.44
331_E	336_D	0.829	0.44
272_T	293_D	0.827	0.44
58_I	69_V	0.827	0.44
76_L	129_E	0.826	0.44
196_A	199_V	0.825	0.43
360_M	368_H	0.823	0.43
313_Y	319_H	0.823	0.43
185_P	225_H	0.822	0.43
195_S	228_G	0.819	0.43
356_D	361_K	0.819	0.43
237_V	250_R	0.816	0.43
94_Y	219_G	0.816	0.43
357_A	363_E	0.816	0.43
350_A	353_S	0.813	0.43
149_L	202_Q	0.806	0.42
338_A	351_S	0.804	0.42
17_M	50_V	0.803	0.42
224_S	232_E	0.802	0.42
81_A	338_A	0.802	0.42
188_I	192_E	0.799	0.41
297_G	300_F	0.795	0.41
62_S	225_H	0.795	0.41
24_K	121_M	0.794	0.41
158_E	161_A	0.791	0.41
224_S	227_M	0.791	0.41
314_D	327_R	0.791	0.41
82_G	193_P	0.789	0.41
214_A	253_D	0.787	0.41
68_T	192_E	0.787	0.41
294_P	302_T	0.787	0.41
330_V	351_S	0.783	0.40
351_S	356_D	0.781	0.40
24_K	77_T	0.779	0.40
126_S	164_P	0.777	0.40
336_D	348_D	0.775	0.40
338_A	350_A	0.772	0.39
141_R	145_I	0.770	0.39
17_M	149_L	0.768	0.39
59_V	71_E	0.767	0.39
63_G	66_K	0.767	0.39
238_A	248_M	0.760	0.39
22_L	72_S	0.760	0.39
316_E	321_R	0.760	0.39
197_L	226_D	0.759	0.38
173_Q	177_L	0.757	0.38
346_V	349_D	0.755	0.38
177_L	182_V	0.752	0.38
48_F	69_V	0.749	0.38
311_D	320_W	0.748	0.38
197_L	205_V	0.747	0.38
74_L	196_A	0.747	0.38
126_S	130_P	0.747	0.38
313_Y	318_A	0.746	0.37
175_V	201_V	0.744	0.37
337_V	343_F	0.740	0.37
193_P	227_M	0.740	0.37
131_L	182_V	0.739	0.37
171_Q	174_R	0.738	0.37
356_D	365_R	0.738	0.37
348_D	354_P	0.737	0.37
342_A	350_A	0.734	0.37
362_A	368_H	0.734	0.37
364_L	367_E	0.732	0.36
354_P	359_A	0.729	0.36
196_A	223_I	0.726	0.36
22_L	267_L	0.725	0.36
128_A	132_K	0.725	0.36
309_Q	320_W	0.724	0.36
315_F	320_W	0.724	0.36
68_T	171_Q	0.724	0.36
312_G	316_E	0.724	0.36
60_G	168_S	0.720	0.36
59_V	226_D	0.720	0.36
227_M	247_E	0.718	0.35
308_I	330_V	0.711	0.35
146_A	182_V	0.710	0.35
360_M	365_R	0.710	0.35
358_D	362_A	0.705	0.35
262_Y	269_S	0.704	0.34
352_V	358_D	0.704	0.34
193_P	226_D	0.700	0.34
109_I	179_R	0.697	0.34
193_P	229_V	0.696	0.34
194_V	229_V	0.693	0.34
223_I	247_E	0.692	0.34
196_A	229_V	0.692	0.34
357_A	360_M	0.692	0.34
333_H	339_G	0.691	0.34
268_R	282_A	0.691	0.34
19_V	84_V	0.691	0.34
70_A	175_V	0.689	0.33
171_Q	176_A	0.689	0.33
318_A	327_R	0.687	0.33
320_W	324_M	0.687	0.33
14_E	329_A	0.686	0.33
362_A	367_E	0.686	0.33
327_R	341_R	0.681	0.33
356_D	366_R	0.680	0.33
75_R	224_S	0.679	0.33
322_G	361_K	0.678	0.33
294_P	297_G	0.674	0.32
120_R	126_S	0.673	0.32
24_K	68_T	0.669	0.32
196_A	247_E	0.669	0.32
108_M	209_L	0.668	0.32
46_V	275_V	0.667	0.32
317_Q	328_V	0.667	0.32
109_I	116_S	0.667	0.32
62_S	229_V	0.667	0.32
15_S	87_D	0.665	0.32
202_Q	206_L	0.665	0.32
309_Q	341_R	0.664	0.32
183_V	222_F	0.661	0.31
148_D	337_V	0.661	0.31
295_P	301_H	0.660	0.31
317_Q	321_R	0.659	0.31
316_E	323_V	0.655	0.31
138_P	177_L	0.654	0.31
343_F	353_S	0.653	0.31
263_T	273_V	0.651	0.31
171_Q	196_A	0.649	0.31
65_G	170_G	0.649	0.31
68_T	71_E	0.648	0.31
103_R	111_Q	0.648	0.31
153_V	208_L	0.644	0.30
347_E	350_A	0.644	0.30
22_L	192_E	0.643	0.30
304_C	311_D	0.642	0.30
24_K	136_V	0.635	0.30
303_R	311_D	0.634	0.30
323_V	337_V	0.632	0.30
323_V	346_V	0.632	0.30
239_V	247_E	0.630	0.29
57_G	225_H	0.630	0.29
50_V	88_G	0.629	0.29
223_I	226_D	0.628	0.29
345_G	348_D	0.628	0.29
178_A	205_V	0.627	0.29
344_V	348_D	0.625	0.29
36_E	230_V	0.624	0.29
351_S	354_P	0.624	0.29
53_G	217_N	0.623	0.29
355_A	362_A	0.622	0.29
316_E	328_V	0.621	0.29
223_I	239_V	0.620	0.29
95_D	101_R	0.618	0.29
177_L	204_E	0.617	0.29
276_E	342_A	0.616	0.28
100_K	216_F	0.615	0.28
26_Y	172_K	0.614	0.28
170_G	173_Q	0.614	0.28
358_D	361_K	0.614	0.28
172_K	176_A	0.614	0.28
155_M	171_Q	0.613	0.28
115_S	126_S	0.610	0.28
159_D	224_S	0.610	0.28
323_V	326_L	0.609	0.28
347_E	351_S	0.608	0.28
131_L	196_A	0.608	0.28
133_I	136_V	0.608	0.28
55_T	224_S	0.606	0.28
360_M	366_R	0.606	0.28
309_Q	315_F	0.605	0.28
218_L	223_I	0.604	0.28
14_E	187_L	0.602	0.28
111_Q	249_G	0.601	0.28
363_E	366_R	0.600	0.27
27_P	36_E	0.598	0.27
227_M	239_V	0.594	0.27
129_E	206_L	0.594	0.27
152_R	216_F	0.594	0.27
338_A	346_V	0.594	0.27
149_L	153_V	0.594	0.27
319_H	347_E	0.593	0.27
61_E	262_Y	0.592	0.27
293_D	358_D	0.591	0.27
107_Q	199_V	0.590	0.27
341_R	346_V	0.590	0.27
286_G	300_F	0.587	0.27
82_G	225_H	0.586	0.27
118_D	126_S	0.586	0.27
299_N	302_T	0.586	0.27
76_L	226_D	0.585	0.27
191_D	225_H	0.585	0.27
88_G	243_G	0.585	0.27
159_D	231_R	0.584	0.26
27_P	184_N	0.584	0.26
145_I	149_L	0.583	0.26
358_D	366_R	0.583	0.26
43_V	239_V	0.581	0.26
126_S	173_Q	0.580	0.26
309_Q	318_A	0.579	0.26
361_K	365_R	0.576	0.26
127_V	146_A	0.574	0.26
293_D	317_Q	0.574	0.26
309_Q	312_G	0.573	0.26
46_V	127_V	0.572	0.26
138_P	188_I	0.571	0.26
265_A	268_R	0.570	0.26
122_T	244_E	0.568	0.25
319_H	351_S	0.568	0.25
350_A	354_P	0.567	0.25
291_P	300_F	0.565	0.25
24_K	135_G	0.565	0.25
345_G	360_M	0.565	0.25
350_A	355_A	0.565	0.25
60_G	198_D	0.564	0.25
287_E	323_V	0.563	0.25
227_M	254_V	0.563	0.25
67_S	108_M	0.563	0.25
359_A	364_L	0.563	0.25
131_L	146_A	0.562	0.25
313_Y	327_R	0.562	0.25
87_D	219_G	0.560	0.25
347_E	359_A	0.560	0.25
67_S	191_D	0.559	0.25
73_V	333_H	0.559	0.25
155_M	195_S	0.558	0.25
316_E	325_N	0.557	0.25
76_L	150_L	0.554	0.25
113_P	227_M	0.553	0.25
126_S	159_D	0.552	0.25
112_N	164_P	0.551	0.24
181_L	218_L	0.551	0.24
202_Q	247_E	0.550	0.24
109_I	154_G	0.550	0.24
199_V	242_L	0.549	0.24
303_R	321_R	0.545	0.24
336_D	339_G	0.542	0.24
296_T	301_H	0.542	0.24
113_P	196_A	0.541	0.24
337_V	342_A	0.541	0.24
69_V	133_I	0.540	0.24
320_W	323_V	0.540	0.24
295_P	300_F	0.540	0.24
321_R	337_V	0.539	0.24
340_L	359_A	0.538	0.24
39_R	190_A	0.538	0.24
176_A	195_S	0.536	0.24
130_P	171_Q	0.536	0.24
60_G	191_D	0.535	0.24
247_E	266_L	0.535	0.24
262_Y	266_L	0.534	0.24
318_A	328_V	0.532	0.23
64_C	240_M	0.531	0.23
325_N	333_H	0.528	0.23
322_G	331_E	0.525	0.23
183_V	229_V	0.525	0.23
126_S	171_Q	0.523	0.23
353_S	361_K	0.523	0.23
291_P	294_P	0.523	0.23
172_K	226_D	0.522	0.23
174_R	238_A	0.521	0.23
327_R	345_G	0.519	0.23
296_T	305_P	0.519	0.23
334_G	339_G	0.517	0.23
344_V	347_E	0.516	0.23
111_Q	169_G	0.516	0.23
102_F	127_V	0.515	0.22
351_S	355_A	0.514	0.22
48_F	237_V	0.512	0.22
360_M	367_E	0.511	0.22
343_F	351_S	0.510	0.22
311_D	324_M	0.510	0.22
226_D	247_E	0.508	0.22
353_S	357_A	0.508	0.22
115_S	124_G	0.507	0.22
169_G	223_I	0.506	0.22
188_I	197_L	0.505	0.22
334_G	344_V	0.504	0.22
113_P	180_A	0.504	0.22
230_V	237_V	0.503	0.22
256_N	324_M	0.503	0.22
309_Q	339_G	0.501	0.22
73_V	306_E	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tuiC	2	0.7727	100	0.35	Contact Map
4fwiB	1	0.6864	100	0.353	Contact Map
4ry2A	2	0.5568	100	0.363	Contact Map
4f4cA	1	0.5455	100	0.366	Contact Map
1oxxK	1	0.7932	100	0.382	Contact Map
2it1A	1	0.8091	100	0.384	Contact Map
2yyzA	1	0.8	100	0.385	Contact Map
1g291	4	0.8227	100	0.387	Contact Map
1v43A	2	0.7841	100	0.39	Contact Map
4q9hA	1	0.5773	100	0.39	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0147 seconds.