Q9HMT2 - HALSA - GREMLIN Contacts

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Q9HMT2 - 24-sterol C-methyltransferase

UniProt:	Q9HMT2	Sequences: MPSGGVLPVGVHATPMSVREEFDEWAASGRDKGMEDRHWHTAKDVLARMPVEDDDTVLDLGTGSGYAVRALRERGVARGYGLDGAPEMAANARTYTDDDDLAYVVGDFGSLPFADDAIDHVFSFEAFYYASDPRETLAEIRRVLKSGGTFYCGVNYYEENVHSHDWQDSISVEMTRWDRATYREAFRGAGLHVAAQDLIADTEIDIPAASEFPHEGFDSRADMVERYRTFGTLLTVGVAP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	240 (191)
Sequences:	16655 (11474)
Seq/√Len:	830.2

ECOLI - UBIE UBIG BIOC SMTA YJHP CMOA TAM CMOB TEHB CFA YAFE RLMA
BACSU - MENG YCGJ YODH YXBB YBAJ YRRT YRHH YDAC YQEM YXJB
HALSA - Q9HMT2 Q9HND6 Q9HR81 Q9HRX3 ARSM Q9HQ85 Q9HR63 Q9HSK6
SULSO - Q7LXN7 Q97ZU8 Q97WT7 Q97X57 Q97XD7 Q97WH3 Q97WN4 Q97YX4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
56_T	78_R	3.057	1.00
141_R	191_L	2.826	1.00
86_P	105_V	2.747	1.00
68_V	79_G	2.547	1.00
139_E	142_R	2.535	1.00
62_T	81_G	2.521	1.00
80_Y	118_I	2.509	1.00
140_I	150_F	2.382	1.00
61_G	126_A	2.334	1.00
119_D	145_K	2.316	1.00
134_R	188_G	2.294	1.00
82_L	106_G	2.195	1.00
78_R	102_A	2.148	1.00
55_D	120_H	2.147	1.00
121_V	140_I	2.138	1.00
113_F	118_I	2.121	1.00
80_Y	104_V	2.115	1.00
23_D	85_A	2.105	1.00
89_A	103_Y	2.095	1.00
58_L	118_I	2.075	1.00
86_P	90_A	2.074	1.00
89_A	93_R	2.028	1.00
69_R	96_T	2.025	1.00
92_A	103_Y	1.970	1.00
60_L	140_I	1.951	1.00
91_N	94_T	1.861	1.00
144_L	150_F	1.840	1.00
144_L	148_G	1.816	1.00
134_R	138_A	1.807	1.00
139_E	143_V	1.800	1.00
52_E	55_D	1.786	1.00
56_T	80_Y	1.763	1.00
23_D	87_E	1.755	1.00
89_A	105_V	1.742	1.00
57_V	71_L	1.698	1.00
178_D	181_T	1.689	1.00
132_D	135_E	1.688	1.00
121_V	144_L	1.668	1.00
183_R	187_R	1.660	1.00
134_R	185_A	1.650	1.00
96_T	103_Y	1.638	1.00
62_T	68_V	1.555	1.00
133_P	185_A	1.483	1.00
80_Y	102_A	1.470	1.00
15_P	107_D	1.469	1.00
130_A	136_T	1.435	1.00
83_D	89_A	1.434	1.00
68_V	81_G	1.420	1.00
56_T	145_K	1.406	1.00
87_E	90_A	1.391	1.00
69_R	95_Y	1.387	1.00
81_G	103_Y	1.384	1.00
60_L	108_F	1.384	1.00
56_T	118_I	1.373	1.00
135_E	138_A	1.357	1.00
94_T	98_D	1.352	1.00
184_E	188_G	1.348	1.00
57_V	120_H	1.336	1.00
106_G	112_P	1.287	1.00
115_D	142_R	1.286	1.00
107_D	110_S	1.278	1.00
144_L	191_L	1.276	1.00
84_G	107_D	1.264	1.00
126_A	130_A	1.241	1.00
121_V	143_V	1.237	1.00
33_G	36_D	1.235	1.00
30_R	64_S	1.232	1.00
44_D	48_R	1.223	1.00
58_L	121_V	1.218	1.00
114_A	117_A	1.213	1.00
137_L	186_F	1.202	1.00
108_F	126_A	1.179	1.00
123_S	126_A	1.177	1.00
90_A	93_R	1.175	1.00
72_R	100_D	1.169	1.00
43_K	70_A	1.162	1.00
70_A	74_R	1.148	1.00
48_R	197_D	1.142	1.00
15_P	109_G	1.130	1.00
104_V	113_F	1.117	1.00
62_T	92_A	1.115	1.00
82_L	111_L	1.110	1.00
45_V	151_Y	1.089	1.00
61_G	123_S	1.066	1.00
184_E	187_R	1.057	1.00
179_R	198_L	1.052	1.00
134_R	189_A	1.047	1.00
183_R	196_Q	1.034	1.00
56_T	119_D	1.032	1.00
164_H	168_D	1.028	1.00
95_Y	98_D	1.024	1.00
166_W	170_I	1.023	1.00
70_A	73_E	1.019	1.00
96_T	101_L	1.018	1.00
168_D	171_S	1.017	1.00
30_R	95_Y	1.012	1.00
111_L	143_V	1.007	1.00
67_A	122_F	1.006	1.00
67_A	124_F	1.004	1.00
43_K	47_A	1.003	1.00
39_W	43_K	1.003	1.00
108_F	130_A	0.998	1.00
128_Y	154_V	0.995	1.00
112_P	139_E	0.995	1.00
94_T	97_D	0.974	1.00
138_A	189_A	0.964	1.00
90_A	94_T	0.957	1.00
40_H	43_K	0.953	1.00
38_H	41_T	0.950	1.00
71_L	122_F	0.945	1.00
69_R	73_E	0.941	1.00
111_L	139_E	0.938	1.00
83_D	88_M	0.924	1.00
141_R	189_A	0.921	1.00
65_G	92_A	0.919	1.00
136_T	140_I	0.917	1.00
82_L	104_V	0.908	1.00
68_V	101_L	0.907	1.00
51_V	55_D	0.898	1.00
58_L	143_V	0.894	1.00
85_A	88_M	0.889	1.00
36_D	39_W	0.887	1.00
44_D	47_A	0.882	1.00
91_N	95_Y	0.882	1.00
56_T	117_A	0.881	1.00
57_V	79_G	0.875	1.00
57_V	122_F	0.871	1.00
138_A	142_R	0.865	1.00
81_G	92_A	0.865	1.00
55_D	119_D	0.863	1.00
43_K	74_R	0.863	1.00
44_D	197_D	0.859	1.00
32_K	40_H	0.859	1.00
140_I	144_L	0.852	1.00
93_R	102_A	0.851	1.00
181_T	184_E	0.848	1.00
93_R	97_D	0.842	1.00
22_F	128_Y	0.842	1.00
36_D	40_H	0.840	1.00
163_S	166_W	0.836	1.00
135_E	139_E	0.836	1.00
167_Q	171_S	0.831	1.00
50_P	149_T	0.828	1.00
127_F	154_V	0.826	1.00
19_R	23_D	0.824	1.00
109_G	132_D	0.820	1.00
47_A	74_R	0.813	1.00
34_M	38_H	0.804	1.00
110_S	135_E	0.795	1.00
166_W	171_S	0.791	1.00
89_A	92_A	0.790	1.00
137_L	182_Y	0.786	1.00
141_R	190_G	0.785	1.00
68_V	103_Y	0.778	1.00
125_E	128_Y	0.776	1.00
34_M	37_R	0.776	1.00
120_H	148_G	0.774	1.00
80_Y	113_F	0.771	1.00
38_H	42_A	0.769	1.00
115_D	139_E	0.769	1.00
62_T	83_D	0.767	1.00
37_R	41_T	0.765	1.00
16_M	19_R	0.761	1.00
163_S	169_S	0.761	1.00
179_R	196_Q	0.756	1.00
19_R	105_V	0.753	1.00
16_M	20_E	0.747	1.00
185_A	189_A	0.746	1.00
125_E	153_G	0.743	1.00
163_S	167_Q	0.741	1.00
137_L	189_A	0.741	1.00
54_D	76_V	0.739	1.00
59_D	129_Y	0.738	1.00
53_D	76_V	0.733	1.00
66_Y	70_A	0.733	1.00
65_G	103_Y	0.732	1.00
39_W	42_A	0.726	1.00
157_Y	178_D	0.722	1.00
60_L	121_V	0.722	1.00
111_L	118_I	0.721	1.00
46_L	74_R	0.716	1.00
59_D	81_G	0.716	1.00
193_V	196_Q	0.715	1.00
125_E	129_Y	0.711	1.00
123_S	130_A	0.708	1.00
150_F	191_L	0.707	1.00
106_G	111_L	0.697	1.00
64_S	88_M	0.697	1.00
26_A	88_M	0.687	1.00
34_M	42_A	0.685	1.00
120_H	149_T	0.681	1.00
26_A	30_R	0.678	1.00
165_D	169_S	0.676	1.00
127_F	130_A	0.676	1.00
123_S	152_C	0.675	1.00
27_A	91_N	0.666	1.00
69_R	72_R	0.664	1.00
37_R	40_H	0.660	1.00
86_P	93_R	0.659	1.00
127_F	136_T	0.654	1.00
64_S	95_Y	0.653	1.00
33_G	37_R	0.653	1.00
117_A	145_K	0.653	1.00
150_F	186_F	0.651	1.00
167_Q	170_I	0.651	1.00
22_F	129_Y	0.651	1.00
25_W	28_S	0.648	1.00
124_F	153_G	0.645	1.00
24_E	28_S	0.644	1.00
59_D	62_T	0.641	1.00
46_L	70_A	0.637	1.00
186_F	189_A	0.635	1.00
165_D	168_D	0.634	1.00
127_F	182_Y	0.627	1.00
32_K	36_D	0.622	1.00
35_E	39_W	0.622	1.00
166_W	169_S	0.619	1.00
59_D	79_G	0.614	1.00
48_R	195_A	0.613	1.00
179_R	183_R	0.609	1.00
20_E	24_E	0.603	1.00
46_L	51_V	0.602	1.00
49_M	151_Y	0.602	1.00
72_R	101_L	0.602	1.00
17_S	20_E	0.598	1.00
62_T	103_Y	0.597	1.00
18_V	22_F	0.595	1.00
116_D	146_S	0.594	1.00
19_R	86_P	0.593	1.00
19_R	84_G	0.588	1.00
26_A	87_E	0.586	1.00
67_A	71_L	0.585	1.00
133_P	177_W	0.584	1.00
99_D	102_A	0.581	1.00
42_A	46_L	0.579	1.00
162_H	165_D	0.578	1.00
37_R	42_A	0.577	1.00
109_G	130_A	0.576	1.00
127_F	152_C	0.575	1.00
93_R	103_Y	0.574	1.00
36_D	42_A	0.573	1.00
26_A	29_G	0.570	1.00
78_R	100_D	0.570	1.00
88_M	125_E	0.565	1.00
115_D	143_V	0.564	1.00
142_R	145_K	0.559	1.00
127_F	137_L	0.555	1.00
30_R	91_N	0.555	1.00
116_D	145_K	0.553	1.00
138_A	188_G	0.552	1.00
46_L	49_M	0.548	1.00
27_A	87_E	0.547	1.00
185_A	188_G	0.546	1.00
121_V	148_G	0.544	1.00
45_V	48_R	0.543	1.00
154_V	182_Y	0.543	1.00
46_L	71_L	0.542	1.00
81_G	101_L	0.537	1.00
118_I	143_V	0.533	1.00
35_E	38_H	0.533	1.00
45_V	49_M	0.530	1.00
157_Y	181_T	0.529	1.00
109_G	135_E	0.527	1.00
183_R	193_V	0.525	1.00
15_P	19_R	0.524	1.00
23_D	86_P	0.521	1.00
128_Y	155_N	0.520	1.00
69_R	103_Y	0.519	1.00
199_I	206_I	0.519	1.00
22_F	29_G	0.518	1.00
137_L	152_C	0.516	1.00
62_T	82_L	0.516	1.00
55_D	76_V	0.514	1.00
57_V	75_G	0.513	1.00
68_V	72_R	0.513	1.00
113_F	143_V	0.511	1.00
93_R	96_T	0.510	1.00
87_E	91_N	0.509	1.00
123_S	140_I	0.505	1.00
67_A	128_Y	0.504	1.00
61_G	130_A	0.504	1.00
34_M	40_H	0.504	1.00
20_E	23_D	0.501	1.00
22_F	28_S	0.501	1.00
34_M	41_T	0.500	1.00
152_C	182_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pneA	2	0.9708	100	0.409	Contact Map
2fk8A	1	0.9125	100	0.426	Contact Map
2o57A	2	0.9542	100	0.436	Contact Map
4obxA	2	0.7875	100	0.439	Contact Map
3hemA	2	0.9458	100	0.439	Contact Map
4ineA	2	1	100	0.447	Contact Map
4kriA	1	0.9833	100	0.45	Contact Map
3bkxA	2	0.925	100	0.454	Contact Map
3kkzA	2	0.9375	100	0.454	Contact Map
3ujcA	1	0.9333	100	0.455	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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