DP2S - HALSA - GREMLIN Contacts

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DP2S - DNA polymerase II small subunit

UniProt:	Q9HMR7	Sequences: MPLEPSVRVVRELTSRGYNADREAVTLLAGADDPGAAVERAVAAAAADAATLTVSDVRAVLDAHTASSAAQTSAPASTPPDEATTHTDPSATDTPPNHDGGRAATADARSVEIDGDMTGASTGTGEYQDFVSVFRDRYDRLAAQLRGRVNHRPTSALASMPGGSDAAIVGMVNDIRSTTSGHWRVELEDTNGVFPVLVLKDRDVSDLVDDLLLDEVIAVSGTLADDGTILFADDIYFPEVPRTYSPSTADRSVQAALISDVHVGSQEFAADAWRSFADWLHTPAAESVEYLLIAGDMVEGVGVYPGQDEELDIVDIYDQYETFAEHLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIMRAHDARITSNPSTVTIDGVSVLLYHGVSLDEVIAEHPSDDVTYDDPQNAMELLLKKRHVAPPFGGRTRLAPEAEDHLAIDTVPDVFHTGHVHKLGVGIHHNVRLVNSGCWQHQTAFQESVNISPDVATAPILDLDTLDITVHKFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	508 (390)
Sequences:	392 (284)
Seq/√Len:	14.4

HALSA - DP2S

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
448_V	495_L	8.958	1.00
252_S	496_D	6.481	1.00
386_L	450_H	6.452	1.00
255_A	384_V	5.110	1.00
257_L	292_L	3.973	1.00
384_V	448_V	3.792	1.00
416_L	449_F	3.705	0.99
464_N	476_Q	3.452	0.99
172_V	217_I	3.248	0.99
243_T	447_D	3.225	0.98
293_I	327_L	3.125	0.98
414_E	460_G	3.116	0.98
258_I	291_L	3.068	0.98
144_Q	420_R	2.977	0.97
459_V	479_F	2.940	0.97
291_L	334_M	2.846	0.97
196_V	232_A	2.617	0.94
252_S	498_D	2.513	0.93
280_L	291_L	2.448	0.92
387_Y	391_S	2.440	0.92
190_T	490_A	2.402	0.91
293_I	338_M	2.396	0.91
106_A	111_V	2.365	0.91
117_M	372_S	2.358	0.91
409_P	455_H	2.275	0.89
254_Q	496_D	2.167	0.86
323_F	327_L	2.150	0.86
408_D	411_N	2.148	0.86
171_M	216_V	2.072	0.84
262_H	487_P	2.053	0.83
392_L	416_L	2.045	0.83
217_I	284_A	2.028	0.82
256_A	492_A	1.936	0.79
235_I	238_P	1.932	0.79
154_T	157_L	1.927	0.79
262_H	343_H	1.910	0.78
364_R	392_L	1.904	0.78
241_P	445_V	1.839	0.75
352_Q	373_N	1.835	0.75
337_V	375_S	1.822	0.75
491_T	504_V	1.820	0.75
339_I	450_H	1.803	0.74
371_T	375_S	1.737	0.71
308_D	311_L	1.735	0.71
140_R	437_E	1.711	0.70
420_R	464_N	1.695	0.69
334_M	365_A	1.692	0.69
395_V	416_L	1.689	0.69
256_A	280_L	1.668	0.68
218_A	450_H	1.667	0.68
417_L	421_H	1.659	0.67
172_V	287_S	1.655	0.67
157_L	227_G	1.642	0.67
304_Y	307_Q	1.610	0.65
255_A	497_L	1.604	0.65
294_A	450_H	1.600	0.65
237_F	483_V	1.597	0.64
256_A	291_L	1.596	0.64
307_Q	311_L	1.590	0.64
417_L	507_F	1.576	0.63
108_A	111_V	1.549	0.62
223_L	398_E	1.548	0.62
176_R	180_S	1.546	0.62
319_Q	420_R	1.531	0.61
196_V	425_P	1.528	0.61
393_D	458_G	1.524	0.61
322_T	325_E	1.517	0.60
492_A	507_F	1.509	0.60
445_V	464_N	1.498	0.59
170_G	221_G	1.487	0.59
262_H	298_V	1.461	0.57
130_F	391_S	1.446	0.56
113_I	120_A	1.445	0.56
227_G	394_E	1.443	0.56
339_I	385_L	1.442	0.56
106_A	109_R	1.423	0.55
252_S	287_S	1.421	0.55
391_S	433_A	1.421	0.55
307_Q	310_E	1.420	0.55
328_K	362_I	1.404	0.54
277_A	329_D	1.404	0.54
324_A	386_L	1.388	0.53
259_S	452_G	1.387	0.53
238_P	350_E	1.372	0.52
135_R	319_Q	1.371	0.52
378_T	383_S	1.359	0.52
280_L	431_R	1.358	0.52
236_Y	395_V	1.325	0.50
117_M	120_A	1.320	0.50
255_A	383_S	1.311	0.49
175_I	178_T	1.310	0.49
251_R	384_V	1.310	0.49
297_M	323_F	1.309	0.49
302_G	343_H	1.305	0.49
280_L	492_A	1.303	0.49
329_D	332_G	1.298	0.48
326_H	439_H	1.296	0.48
216_V	395_V	1.287	0.48
193_V	232_A	1.285	0.48
347_R	480_Q	1.279	0.47
492_A	505_H	1.277	0.47
339_I	388_H	1.273	0.47
169_V	310_E	1.273	0.47
239_E	418_K	1.270	0.47
279_W	417_L	1.269	0.47
396_I	409_P	1.265	0.47
158_A	192_G	1.257	0.46
264_G	421_H	1.256	0.46
413_M	480_Q	1.256	0.46
339_I	386_L	1.248	0.46
149_V	218_A	1.246	0.45
165_D	233_D	1.242	0.45
291_L	336_I	1.238	0.45
339_I	371_T	1.235	0.45
173_N	193_V	1.228	0.44
292_L	386_L	1.222	0.44
485_I	488_D	1.220	0.44
334_M	392_L	1.218	0.44
172_V	491_T	1.213	0.44
440_L	444_T	1.213	0.44
381_G	475_H	1.213	0.44
397_A	451_T	1.210	0.44
223_L	230_L	1.207	0.43
112_E	219_V	1.204	0.43
393_D	409_P	1.198	0.43
194_F	197_L	1.194	0.43
390_V	429_R	1.190	0.42
474_Q	477_T	1.190	0.42
300_G	343_H	1.189	0.42
180_S	491_T	1.179	0.42
343_H	388_H	1.177	0.42
217_I	235_I	1.173	0.42
108_A	120_A	1.171	0.41
298_V	481_E	1.165	0.41
334_M	507_F	1.163	0.41
385_L	483_V	1.163	0.41
292_L	379_I	1.155	0.41
298_V	305_P	1.147	0.40
223_L	234_D	1.146	0.40
142_A	194_F	1.143	0.40
220_S	234_D	1.142	0.40
285_A	444_T	1.141	0.40
185_V	327_L	1.130	0.39
166_A	230_L	1.129	0.39
425_P	430_T	1.128	0.39
241_P	420_R	1.126	0.39
230_L	350_E	1.117	0.39
196_V	486_S	1.110	0.38
169_V	448_V	1.108	0.38
330_V	443_D	1.103	0.38
276_F	297_M	1.102	0.38
462_H	480_Q	1.101	0.38
258_I	279_W	1.096	0.37
216_V	227_G	1.091	0.37
393_D	479_F	1.085	0.37
215_E	387_Y	1.078	0.37
237_F	338_M	1.074	0.36
219_V	444_T	1.065	0.36
302_G	305_P	1.065	0.36
192_G	490_A	1.064	0.36
354_A	430_T	1.064	0.36
353_P	433_A	1.063	0.36
208_V	330_V	1.063	0.36
141_L	504_V	1.063	0.36
125_G	298_V	1.060	0.36
347_R	445_V	1.057	0.35
279_W	285_A	1.055	0.35
227_G	433_A	1.053	0.35
306_G	310_E	1.053	0.35
288_V	338_M	1.053	0.35
278_D	321_E	1.049	0.35
140_R	441_A	1.044	0.35
253_V	380_D	1.041	0.35
133_V	432_L	1.039	0.35
211_L	238_P	1.037	0.34
194_F	449_F	1.032	0.34
146_R	169_V	1.028	0.34
241_P	392_L	1.028	0.34
173_N	429_R	1.024	0.34
187_L	499_T	1.023	0.34
454_V	484_N	1.021	0.34
127_Y	359_L	1.020	0.34
218_A	355_F	1.018	0.34
272_A	490_A	1.016	0.33
439_H	486_S	1.016	0.33
457_L	502_I	1.015	0.33
111_V	114_D	1.015	0.33
130_F	436_A	1.013	0.33
263_V	272_A	1.012	0.33
382_V	447_D	1.010	0.33
264_G	417_L	1.006	0.33
441_A	492_A	1.003	0.33
320_Y	357_E	1.003	0.33
241_P	423_A	1.002	0.33
249_A	255_A	1.000	0.33
116_D	338_M	0.998	0.33
263_V	488_D	0.994	0.32
272_A	417_L	0.993	0.32
157_L	192_G	0.987	0.32
392_L	438_D	0.987	0.32
149_V	294_A	0.986	0.32
248_T	336_I	0.985	0.32
213_L	428_G	0.980	0.32
253_V	274_R	0.970	0.31
186_E	192_G	0.966	0.31
410_Q	486_S	0.961	0.31
163_G	360_R	0.954	0.30
394_E	498_D	0.951	0.30
185_V	336_I	0.945	0.30
387_Y	480_Q	0.943	0.30
263_V	270_A	0.938	0.30
112_E	378_T	0.938	0.30
496_D	506_K	0.936	0.30
122_T	435_E	0.935	0.30
153_P	276_F	0.935	0.30
168_I	408_D	0.933	0.30
385_L	422_V	0.930	0.29
271_D	276_F	0.926	0.29
254_Q	331_P	0.926	0.29
172_V	185_V	0.925	0.29
167_A	234_D	0.922	0.29
211_L	499_T	0.918	0.29
185_V	490_A	0.916	0.29
357_E	418_K	0.916	0.29
375_S	400_P	0.914	0.29
290_Y	337_V	0.912	0.29
182_H	217_I	0.911	0.29
257_L	483_V	0.910	0.28
280_L	330_V	0.907	0.28
191_N	454_V	0.903	0.28
264_G	442_I	0.899	0.28
481_E	495_L	0.899	0.28
268_F	343_H	0.897	0.28
347_R	421_H	0.896	0.28
157_L	194_F	0.888	0.28
216_V	256_A	0.887	0.27
388_H	465_V	0.882	0.27
237_F	263_V	0.881	0.27
157_L	490_A	0.879	0.27
257_L	450_H	0.877	0.27
123_G	444_T	0.873	0.27
240_V	445_V	0.873	0.27
414_E	496_D	0.870	0.27
299_E	302_G	0.868	0.27
350_E	387_Y	0.867	0.27
293_I	395_V	0.866	0.27
187_L	414_E	0.866	0.27
115_G	355_F	0.859	0.26
392_L	412_A	0.857	0.26
408_D	476_Q	0.857	0.26
158_A	454_V	0.856	0.26
432_L	448_V	0.856	0.26
265_S	315_D	0.852	0.26
227_G	496_D	0.852	0.26
434_P	483_V	0.851	0.26
137_R	424_P	0.849	0.26
161_P	222_T	0.844	0.26
279_W	334_M	0.844	0.26
129_D	193_V	0.843	0.26
178_T	182_H	0.842	0.26
185_V	211_L	0.838	0.25
317_Y	397_A	0.837	0.25
273_W	346_V	0.834	0.25
158_A	191_N	0.833	0.25
140_R	298_V	0.831	0.25
217_I	253_V	0.831	0.25
138_Y	190_T	0.830	0.25
141_L	263_V	0.828	0.25
296_D	413_M	0.828	0.25
186_E	336_I	0.828	0.25
283_P	399_H	0.826	0.25
123_G	153_P	0.825	0.25
321_E	381_G	0.825	0.25
337_V	432_L	0.825	0.25
236_Y	414_E	0.822	0.25
208_V	257_L	0.820	0.25
130_F	175_I	0.820	0.25
130_F	395_V	0.818	0.25
143_A	495_L	0.817	0.25
148_R	497_L	0.817	0.25
351_P	374_P	0.816	0.24
351_P	389_G	0.816	0.24
374_P	389_G	0.816	0.24
295_G	351_P	0.816	0.24
295_G	374_P	0.816	0.24
295_G	389_G	0.816	0.24
256_A	494_I	0.812	0.24
157_L	198_V	0.812	0.24
157_L	191_N	0.812	0.24
337_V	377_V	0.809	0.24
155_S	496_D	0.806	0.24
242_R	336_I	0.806	0.24
383_S	444_T	0.798	0.24
193_V	327_L	0.797	0.24
423_A	500_L	0.795	0.24
491_T	506_K	0.795	0.24
355_F	449_F	0.794	0.24
104_A	108_A	0.794	0.24
283_P	330_V	0.791	0.23
334_M	370_I	0.789	0.23
291_L	330_V	0.788	0.23
324_A	450_H	0.788	0.23
193_V	486_S	0.787	0.23
128_Q	152_R	0.785	0.23
307_Q	455_H	0.783	0.23
440_L	459_V	0.782	0.23
141_L	144_Q	0.781	0.23
304_Y	477_T	0.779	0.23
142_A	168_I	0.778	0.23
348_L	375_S	0.776	0.23
242_R	425_P	0.775	0.23
249_A	257_L	0.775	0.23
399_H	412_A	0.775	0.23
298_V	350_E	0.774	0.23
186_E	276_F	0.771	0.23
397_A	410_Q	0.770	0.23
187_L	261_V	0.769	0.23
143_A	364_R	0.767	0.23
421_H	507_F	0.766	0.22
263_V	326_H	0.764	0.22
165_D	420_R	0.764	0.22
132_S	416_L	0.763	0.22
173_N	229_I	0.762	0.22
391_S	439_H	0.760	0.22
108_A	274_R	0.759	0.22
177_S	408_D	0.759	0.22
339_I	358_E	0.757	0.22
172_V	502_I	0.754	0.22
119_G	288_V	0.752	0.22
239_E	421_H	0.749	0.22
405_T	408_D	0.744	0.22
132_S	256_A	0.742	0.22
456_K	485_I	0.740	0.22
417_L	506_K	0.739	0.21
341_G	351_P	0.738	0.21
295_G	341_G	0.738	0.21
341_G	389_G	0.738	0.21
341_G	374_P	0.738	0.21
424_P	434_P	0.735	0.21
409_P	412_A	0.734	0.21
213_L	486_S	0.732	0.21
189_D	373_N	0.731	0.21
131_V	432_L	0.730	0.21
259_S	423_A	0.729	0.21
158_A	173_N	0.727	0.21
388_H	453_H	0.726	0.21
271_D	465_V	0.726	0.21
262_H	485_I	0.723	0.21
243_T	338_M	0.719	0.21
296_D	455_H	0.718	0.21
165_D	280_L	0.718	0.21
316_I	322_T	0.718	0.21
285_A	298_V	0.717	0.21
131_V	238_P	0.717	0.21
166_A	390_V	0.717	0.21
409_P	454_V	0.717	0.21
137_R	446_P	0.716	0.21
144_Q	464_N	0.715	0.21
298_V	349_A	0.714	0.21
214_D	484_N	0.713	0.21
429_R	435_E	0.710	0.20
369_R	448_V	0.709	0.20
301_V	503_T	0.707	0.20
380_D	436_A	0.706	0.20
270_A	379_I	0.703	0.20
256_A	290_Y	0.703	0.20
256_A	379_I	0.702	0.20
372_S	429_R	0.700	0.20
192_G	310_E	0.700	0.20
238_P	441_A	0.699	0.20
130_F	262_H	0.699	0.20
390_V	426_F	0.698	0.20
419_K	486_S	0.698	0.20
244_Y	502_I	0.696	0.20
294_A	359_L	0.696	0.20
460_G	501_D	0.695	0.20
347_R	377_V	0.692	0.20
265_S	476_Q	0.691	0.20
108_A	211_L	0.691	0.20
342_N	388_H	0.690	0.20
178_T	359_L	0.687	0.20
194_F	286_E	0.686	0.20
215_E	419_K	0.686	0.20
367_D	438_D	0.684	0.19
212_L	259_S	0.683	0.19
182_H	443_D	0.683	0.19
294_A	386_L	0.677	0.19
164_S	310_E	0.676	0.19
185_V	309_E	0.676	0.19
296_D	361_S	0.675	0.19
262_H	463_H	0.675	0.19
311_L	319_Q	0.674	0.19
422_V	442_I	0.672	0.19
303_V	392_L	0.669	0.19
350_E	390_V	0.668	0.19
322_T	460_G	0.666	0.19
130_F	321_E	0.664	0.19
422_V	496_D	0.663	0.19
220_S	223_L	0.663	0.19
300_G	462_H	0.662	0.19
234_D	293_I	0.662	0.19
426_F	432_L	0.661	0.19
445_V	476_Q	0.660	0.19
108_A	496_D	0.660	0.19
109_R	336_I	0.659	0.19
397_A	429_R	0.659	0.19
288_V	490_A	0.659	0.19
110_S	327_L	0.659	0.19
415_L	419_K	0.657	0.19
136_D	140_R	0.652	0.18
218_A	483_V	0.652	0.18
397_A	423_A	0.651	0.18
262_H	268_F	0.651	0.18
337_V	447_D	0.649	0.18
217_I	459_V	0.647	0.18
169_V	305_P	0.646	0.18
193_V	275_S	0.646	0.18
141_L	441_A	0.645	0.18
268_F	300_G	0.644	0.18
285_A	507_F	0.642	0.18
109_R	359_L	0.642	0.18
350_E	438_D	0.641	0.18
275_S	428_G	0.640	0.18
421_H	446_P	0.639	0.18
442_I	501_D	0.637	0.18
257_L	453_H	0.636	0.18
148_R	409_P	0.635	0.18
497_L	500_L	0.635	0.18
212_L	253_V	0.635	0.18
272_A	318_D	0.634	0.18
321_E	330_V	0.633	0.18
240_V	288_V	0.633	0.18
359_L	411_N	0.631	0.18
280_L	334_M	0.630	0.18
310_E	319_Q	0.629	0.18
312_D	334_M	0.628	0.18
237_F	384_V	0.628	0.18
124_T	168_I	0.628	0.18
347_R	375_S	0.627	0.18
266_Q	380_D	0.626	0.18
361_S	505_H	0.623	0.17
220_S	230_L	0.623	0.17
160_M	337_V	0.622	0.17
320_Y	490_A	0.621	0.17
185_V	399_H	0.620	0.17
184_R	455_H	0.619	0.17
361_S	487_P	0.618	0.17
325_E	448_V	0.615	0.17
191_N	457_L	0.614	0.17
461_I	489_V	0.613	0.17
156_A	159_S	0.613	0.17
489_V	500_L	0.611	0.17
163_G	335_E	0.611	0.17
166_A	171_M	0.610	0.17
392_L	449_F	0.606	0.17
122_T	411_N	0.603	0.17
143_A	381_G	0.602	0.17
427_G	484_N	0.602	0.17
109_R	114_D	0.602	0.17
218_A	237_F	0.601	0.17
241_P	258_I	0.600	0.17
172_V	492_A	0.599	0.17
346_V	353_P	0.598	0.17
163_G	359_L	0.597	0.17
269_A	436_A	0.597	0.17
304_Y	379_I	0.595	0.17
189_D	352_Q	0.595	0.17
286_E	444_T	0.595	0.17
177_S	180_S	0.594	0.17
192_G	243_T	0.593	0.17
283_P	444_T	0.593	0.17
302_G	477_T	0.586	0.16
134_F	426_F	0.584	0.16
453_H	485_I	0.583	0.16
417_L	446_P	0.583	0.16
240_V	420_R	0.583	0.16
361_S	458_G	0.582	0.16
374_P	438_D	0.581	0.16
351_P	438_D	0.581	0.16
389_G	438_D	0.581	0.16
295_G	438_D	0.581	0.16
254_Q	332_G	0.580	0.16
320_Y	350_E	0.580	0.16
314_V	333_D	0.579	0.16
255_A	292_L	0.579	0.16
265_S	268_F	0.578	0.16
277_A	326_H	0.578	0.16
129_D	419_K	0.577	0.16
185_V	401_S	0.576	0.16
250_D	298_V	0.575	0.16
247_S	255_A	0.575	0.16
355_F	502_I	0.574	0.16
157_L	229_I	0.573	0.16
158_A	398_E	0.573	0.16
155_S	240_V	0.572	0.16
285_A	417_L	0.571	0.16
129_D	171_M	0.570	0.16
413_M	451_T	0.570	0.16
299_E	343_H	0.570	0.16
383_S	441_A	0.569	0.16
423_A	451_T	0.568	0.16
293_I	417_L	0.567	0.16
330_V	477_T	0.566	0.16
314_V	323_F	0.565	0.16
134_F	427_G	0.564	0.16
130_F	379_I	0.563	0.16
431_R	492_A	0.563	0.16
178_T	296_D	0.563	0.16
342_N	367_D	0.562	0.16
221_G	355_F	0.561	0.16
390_V	394_E	0.559	0.16
360_R	386_L	0.559	0.16
239_E	420_R	0.559	0.16
365_A	383_S	0.558	0.16
343_H	488_D	0.557	0.15
415_L	418_K	0.556	0.15
246_P	497_L	0.555	0.15
297_M	505_H	0.554	0.15
108_A	232_A	0.553	0.15
178_T	331_P	0.552	0.15
291_L	492_A	0.551	0.15
164_S	336_I	0.550	0.15
421_H	497_L	0.550	0.15
279_W	288_V	0.550	0.15
324_A	360_R	0.549	0.15
212_L	428_G	0.549	0.15
187_L	233_D	0.548	0.15
254_Q	494_I	0.547	0.15
195_P	384_V	0.547	0.15
306_G	311_L	0.546	0.15
350_E	448_V	0.546	0.15
256_A	276_F	0.545	0.15
298_V	479_F	0.545	0.15
141_L	350_E	0.543	0.15
180_S	392_L	0.543	0.15
157_L	358_E	0.543	0.15
238_P	262_H	0.543	0.15
238_P	303_V	0.542	0.15
257_L	475_H	0.542	0.15
218_A	445_V	0.542	0.15
160_M	233_D	0.541	0.15
257_L	337_V	0.540	0.15
112_E	293_I	0.538	0.15
426_F	484_N	0.534	0.15
214_D	427_G	0.531	0.15
133_V	496_D	0.530	0.15
156_A	505_H	0.529	0.15
146_R	379_I	0.528	0.15
356_D	450_H	0.527	0.15
430_T	449_F	0.525	0.15
372_S	409_P	0.524	0.15
293_I	336_I	0.524	0.15
247_S	283_P	0.524	0.15
331_P	421_H	0.523	0.15
190_T	355_F	0.523	0.15
123_G	250_D	0.523	0.15
257_L	499_T	0.522	0.14
425_P	486_S	0.522	0.14
217_I	376_T	0.522	0.14
365_A	483_V	0.520	0.14
241_P	379_I	0.519	0.14
337_V	358_E	0.519	0.14
301_V	304_Y	0.518	0.14
208_V	491_T	0.516	0.14
320_Y	391_S	0.516	0.14
301_V	444_T	0.516	0.14
193_V	213_L	0.516	0.14
140_R	216_V	0.515	0.14
385_L	458_G	0.514	0.14
284_A	321_E	0.514	0.14
237_F	284_A	0.511	0.14
123_G	435_E	0.509	0.14
212_L	314_V	0.509	0.14
304_Y	343_H	0.507	0.14
331_P	487_P	0.507	0.14
257_L	448_V	0.507	0.14
342_N	453_H	0.506	0.14
279_W	421_H	0.505	0.14
325_E	338_M	0.504	0.14
377_V	393_D	0.504	0.14
141_L	192_G	0.504	0.14
264_G	388_H	0.503	0.14
459_V	502_I	0.502	0.14
288_V	392_L	0.502	0.14
285_A	288_V	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3e0jA	1	0.7579	100	0.467	Contact Map
3floA	3	0.7421	100	0.594	Contact Map
4y97A	1	0.7854	100	0.618	Contact Map
2yvtA	1	0.4488	99.6	0.897	Contact Map
3ib7A	2	0.4626	99.5	0.905	Contact Map
3av0A	1	0.4429	99.5	0.907	Contact Map
3d03A	5	0.4429	99.5	0.907	Contact Map
1su1A	3	0.3346	99.4	0.909	Contact Map
2kknA	1	0.3031	99.4	0.909	Contact Map
1s3lA	1	0.3248	99.4	0.909	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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