Q9HML5 - HALSA - GREMLIN Contacts

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Q9HML5 - Phosphate ABC transporter binding

UniProt:	Q9HML5	Sequences: MHSDPDDGASGPVSRRAFVAATGTAGVAALAGCANSTDGSGGDGTEAASQDGDETASQSSQLDTSVLTGDGSSTVFPITNEGSSYWNSNPEAGDEDYWPEEWANEYDTEMRLADYFASEYGYEAGGERSSPPFRVSIALSHSGTGIEGVMEDRVDIGDASASAADELPDADSDTLDGFVDHVVGVDGQPIVASREIVDSGVETITIEELRGIYRQEITNWSELGGPDRDILALGRAQGSGTDTSFRANVFGDPEAAISPDQRYGQNQQLQQAIGQADNAIGYIALAFVQPDGDTPPLDLEIDGTTYAYGENLGAEEYPLSRDLHAYTWQDTSRKEAAFINFLLSEFGQEKFVTSNDYFALPESRLSTEREKVAASNYQT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	379 (287)
Sequences:	537 (444)
Seq/√Len:	26.2

ECOLI - PSTS
BACSU - PSTS
HALSA - Q9HML5 Q9HS10
SULSO - Q97ZT8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
219_N	227_D	4.739	1.00
203_T	304_T	3.564	1.00
191_V	273_I	3.522	1.00
204_I	212_I	3.063	1.00
211_G	216_E	3.036	1.00
205_T	208_E	2.936	1.00
120_Y	337_A	2.770	1.00
221_S	227_D	2.761	1.00
208_E	224_G	2.685	0.99
298_D	306_Y	2.645	0.99
104_N	154_V	2.633	0.99
107_D	139_L	2.612	0.99
212_I	230_I	2.597	0.99
228_R	278_N	2.587	0.99
219_N	225_G	2.582	0.99
218_T	222_E	2.557	0.99
104_N	148_G	2.527	0.99
368_E	371_K	2.507	0.99
113_A	342_L	2.505	0.99
190_I	245_F	2.472	0.99
142_S	159_A	2.441	0.99
219_N	229_D	2.408	0.99
150_M	171_D	2.377	0.99
212_I	223_L	2.350	0.98
204_I	209_L	2.330	0.98
300_E	304_T	2.202	0.98
294_T	301_I	2.153	0.97
161_A	167_L	2.101	0.97
343_L	372_V	2.045	0.96
103_A	156_I	2.026	0.96
179_V	329_Q	2.024	0.96
311_N	314_A	2.015	0.96
159_A	326_Y	2.006	0.96
110_M	139_L	1.960	0.95
148_G	154_V	1.949	0.95
160_S	186_D	1.947	0.95
160_S	323_L	1.944	0.95
113_A	338_F	1.933	0.95
186_D	321_R	1.924	0.94
189_P	312_L	1.907	0.94
187_G	312_L	1.891	0.94
231_L	276_A	1.887	0.94
160_S	321_R	1.880	0.94
138_A	148_G	1.879	0.94
246_R	250_F	1.875	0.94
219_N	224_G	1.833	0.93
212_I	215_Q	1.814	0.93
141_H	241_T	1.793	0.92
209_L	341_F	1.787	0.92
340_N	369_R	1.777	0.92
146_I	163_A	1.771	0.92
266_N	287_F	1.760	0.91
362_E	367_T	1.749	0.91
273_I	281_G	1.664	0.89
102_W	136_S	1.663	0.89
338_F	342_L	1.663	0.89
308_Y	311_N	1.659	0.89
155_D	303_G	1.584	0.86
116_F	347_G	1.571	0.86
297_L	301_I	1.568	0.86
244_S	321_R	1.560	0.85
166_E	169_D	1.542	0.85
271_Q	275_Q	1.535	0.84
286_A	357_Y	1.510	0.83
263_Y	269_L	1.471	0.82
294_T	297_L	1.456	0.81
201_V	204_I	1.439	0.80
236_A	265_Q	1.425	0.80
106_Y	109_E	1.417	0.79
213_Y	266_N	1.412	0.79
186_D	323_L	1.408	0.79
217_I	221_S	1.398	0.78
142_S	235_R	1.392	0.78
143_G	241_T	1.390	0.78
188_Q	244_S	1.373	0.77
105_E	141_H	1.372	0.77
108_T	186_D	1.372	0.77
81_E	86_W	1.343	0.75
270_Q	283_I	1.336	0.75
233_L	269_L	1.329	0.75
369_R	373_A	1.326	0.74
182_V	368_E	1.316	0.74
110_M	114_D	1.309	0.73
242_D	282_Y	1.303	0.73
141_H	240_G	1.297	0.73
86_W	135_V	1.293	0.72
179_V	330_D	1.287	0.72
117_A	135_V	1.280	0.72
116_F	342_L	1.278	0.72
108_T	323_L	1.268	0.71
166_E	310_E	1.248	0.70
210_R	213_Y	1.246	0.70
108_T	321_R	1.245	0.70
161_A	243_T	1.226	0.68
170_A	174_T	1.224	0.68
106_Y	240_G	1.223	0.68
118_S	284_A	1.214	0.68
166_E	172_S	1.199	0.67
161_A	186_D	1.198	0.67
206_I	249_V	1.196	0.66
161_A	175_L	1.192	0.66
172_S	362_E	1.187	0.66
143_G	240_G	1.183	0.66
78_I	212_I	1.183	0.66
186_D	284_A	1.181	0.65
161_A	321_R	1.179	0.65
294_T	305_T	1.172	0.65
142_S	322_D	1.166	0.64
301_I	304_T	1.162	0.64
207_E	298_D	1.155	0.64
157_G	324_H	1.149	0.63
142_S	280_I	1.148	0.63
76_F	79_T	1.126	0.62
107_D	348_Q	1.122	0.61
367_T	371_K	1.121	0.61
145_G	149_V	1.115	0.61
193_S	273_I	1.113	0.61
160_S	234_G	1.101	0.60
87_N	91_E	1.100	0.60
235_R	282_Y	1.084	0.59
229_D	335_E	1.080	0.58
367_T	370_E	1.075	0.58
142_S	282_Y	1.066	0.57
120_Y	295_P	1.066	0.57
204_I	308_Y	1.065	0.57
239_S	266_N	1.063	0.57
203_T	300_E	1.048	0.56
154_V	157_G	1.039	0.55
179_V	182_V	1.027	0.54
221_S	224_G	1.010	0.53
78_I	81_E	1.008	0.53
107_D	145_G	1.005	0.53
90_P	94_D	0.997	0.52
142_S	241_T	0.981	0.51
362_E	366_S	0.976	0.51
172_S	216_E	0.975	0.51
108_T	241_T	0.971	0.50
143_G	286_A	0.967	0.50
80_N	84_S	0.961	0.50
283_I	287_F	0.952	0.49
206_I	209_L	0.951	0.49
136_S	355_N	0.946	0.48
263_Y	283_I	0.946	0.48
294_T	304_T	0.943	0.48
303_G	360_L	0.942	0.48
284_A	287_F	0.941	0.48
213_Y	257_I	0.940	0.48
189_P	285_L	0.934	0.48
185_V	320_S	0.928	0.47
98_W	133_F	0.923	0.47
227_D	370_E	0.919	0.46
287_F	357_Y	0.913	0.46
253_P	347_G	0.912	0.46
79_T	205_T	0.909	0.46
187_G	321_R	0.899	0.45
301_I	305_T	0.898	0.45
181_H	224_G	0.895	0.45
184_G	323_L	0.886	0.44
79_T	311_N	0.884	0.44
182_V	364_R	0.884	0.44
227_D	308_Y	0.882	0.44
79_T	207_E	0.880	0.44
162_S	286_A	0.877	0.43
189_P	213_Y	0.875	0.43
97_Y	133_F	0.872	0.43
91_E	354_S	0.868	0.43
85_Y	275_Q	0.868	0.43
366_S	370_E	0.866	0.43
107_D	236_A	0.865	0.43
205_T	300_E	0.863	0.42
300_E	344_S	0.863	0.42
149_V	356_D	0.860	0.42
241_T	266_N	0.859	0.42
211_G	255_A	0.859	0.42
311_N	360_L	0.859	0.42
180_D	326_Y	0.858	0.42
190_I	209_L	0.855	0.42
274_G	305_T	0.853	0.42
107_D	143_G	0.851	0.41
207_E	222_E	0.850	0.41
235_R	266_N	0.849	0.41
161_A	284_A	0.845	0.41
210_R	215_Q	0.844	0.41
280_I	347_G	0.843	0.41
343_L	369_R	0.840	0.41
163_A	322_D	0.837	0.40
82_G	353_T	0.836	0.40
107_D	149_V	0.835	0.40
108_T	160_S	0.832	0.40
363_S	366_S	0.832	0.40
116_F	352_V	0.831	0.40
181_H	339_I	0.831	0.40
266_N	283_I	0.827	0.40
241_T	284_A	0.824	0.40
294_T	299_L	0.824	0.40
167_L	186_D	0.818	0.39
172_S	370_E	0.813	0.39
192_A	201_V	0.813	0.39
129_S	132_P	0.812	0.39
242_D	246_R	0.811	0.39
213_Y	280_I	0.806	0.38
86_W	349_E	0.803	0.38
235_R	239_S	0.803	0.38
143_G	243_T	0.799	0.38
149_V	213_Y	0.795	0.38
165_D	309_G	0.795	0.38
108_T	161_A	0.794	0.37
141_H	145_G	0.793	0.37
235_R	249_V	0.793	0.37
163_A	326_Y	0.793	0.37
78_I	86_W	0.792	0.37
88_S	349_E	0.791	0.37
85_Y	88_S	0.790	0.37
280_I	297_L	0.788	0.37
85_Y	310_E	0.788	0.37
219_N	372_V	0.781	0.37
90_P	310_E	0.780	0.36
345_E	370_E	0.779	0.36
364_R	367_T	0.776	0.36
242_D	361_P	0.775	0.36
142_S	146_I	0.774	0.36
235_R	241_T	0.772	0.36
310_E	363_S	0.771	0.36
89_N	96_D	0.769	0.36
145_G	240_G	0.766	0.36
161_A	164_A	0.764	0.35
132_P	153_R	0.761	0.35
108_T	141_H	0.760	0.35
106_Y	111_R	0.756	0.35
107_D	235_R	0.755	0.35
83_S	217_I	0.754	0.35
284_A	321_R	0.752	0.35
79_T	85_Y	0.751	0.35
280_I	348_Q	0.748	0.34
106_Y	326_Y	0.748	0.34
218_T	367_T	0.747	0.34
237_Q	265_Q	0.746	0.34
145_G	226_P	0.744	0.34
323_L	326_Y	0.741	0.34
82_G	128_R	0.738	0.34
272_A	275_Q	0.736	0.34
166_E	311_N	0.735	0.33
111_R	189_P	0.735	0.33
209_L	299_L	0.731	0.33
136_S	148_G	0.731	0.33
219_N	261_Q	0.731	0.33
106_Y	308_Y	0.729	0.33
91_E	94_D	0.728	0.33
205_T	317_Y	0.727	0.33
139_L	238_G	0.726	0.33
173_D	273_I	0.725	0.33
273_I	296_P	0.723	0.33
157_G	325_A	0.718	0.32
213_Y	251_G	0.718	0.32
182_V	318_P	0.717	0.32
232_A	287_F	0.712	0.32
104_N	140_S	0.712	0.32
83_S	86_W	0.711	0.32
92_A	96_D	0.709	0.32
191_V	373_A	0.709	0.32
143_G	317_Y	0.708	0.32
201_V	225_G	0.708	0.32
108_T	326_Y	0.706	0.32
77_P	81_E	0.704	0.31
111_R	114_D	0.703	0.31
270_Q	284_A	0.701	0.31
88_S	165_D	0.699	0.31
239_S	282_Y	0.698	0.31
167_L	180_D	0.697	0.31
194_R	314_A	0.695	0.31
171_D	176_D	0.691	0.31
170_A	175_L	0.684	0.30
205_T	366_S	0.684	0.30
264_G	267_Q	0.681	0.30
86_W	90_P	0.680	0.30
287_F	331_T	0.679	0.30
164_A	167_L	0.678	0.30
109_E	112_L	0.675	0.30
296_P	305_T	0.674	0.30
183_V	307_A	0.674	0.30
116_F	356_D	0.674	0.30
204_I	225_G	0.673	0.29
164_A	336_A	0.669	0.29
190_I	296_P	0.666	0.29
155_D	331_T	0.665	0.29
212_I	217_I	0.664	0.29
289_Q	294_T	0.662	0.29
121_G	204_I	0.661	0.29
168_P	178_F	0.661	0.29
206_I	358_F	0.659	0.29
187_G	313_G	0.657	0.28
118_S	315_E	0.656	0.28
333_R	337_A	0.655	0.28
140_S	238_G	0.655	0.28
327_T	339_I	0.655	0.28
227_D	230_I	0.654	0.28
136_S	183_V	0.651	0.28
277_D	297_L	0.650	0.28
115_Y	279_A	0.649	0.28
154_V	269_L	0.649	0.28
160_S	242_D	0.649	0.28
113_A	265_Q	0.648	0.28
213_Y	232_A	0.648	0.28
290_P	362_E	0.646	0.28
233_L	279_A	0.646	0.28
267_Q	270_Q	0.643	0.28
285_L	289_Q	0.643	0.28
241_T	269_L	0.642	0.28
142_S	240_G	0.642	0.28
87_N	302_D	0.640	0.27
142_S	239_S	0.637	0.27
184_G	192_A	0.637	0.27
182_V	193_S	0.635	0.27
213_Y	259_P	0.635	0.27
182_V	360_L	0.633	0.27
207_E	229_D	0.632	0.27
100_E	136_S	0.631	0.27
192_A	223_L	0.627	0.27
235_R	240_G	0.625	0.27
233_L	273_I	0.624	0.27
140_S	239_S	0.624	0.27
105_E	108_T	0.622	0.26
235_R	265_Q	0.622	0.26
365_L	369_R	0.618	0.26
163_A	178_F	0.614	0.26
220_W	317_Y	0.614	0.26
287_F	303_G	0.614	0.26
113_A	325_A	0.612	0.26
296_P	299_L	0.612	0.26
370_E	373_A	0.611	0.26
158_D	325_A	0.610	0.26
153_R	329_Q	0.607	0.26
94_D	299_L	0.606	0.26
171_D	264_G	0.606	0.26
219_N	222_E	0.604	0.25
255_A	366_S	0.603	0.25
93_G	97_Y	0.602	0.25
325_A	342_L	0.599	0.25
109_E	328_W	0.596	0.25
104_N	138_A	0.594	0.25
330_D	333_R	0.593	0.25
209_L	349_E	0.593	0.25
170_A	193_S	0.592	0.25
120_Y	341_F	0.591	0.25
138_A	153_R	0.586	0.24
149_V	317_Y	0.585	0.24
362_E	369_R	0.585	0.24
216_E	302_D	0.585	0.24
148_G	234_G	0.584	0.24
193_S	335_E	0.584	0.24
84_S	183_V	0.584	0.24
102_W	218_T	0.583	0.24
241_T	321_R	0.581	0.24
189_P	259_P	0.580	0.24
83_S	173_D	0.578	0.24
231_L	269_L	0.578	0.24
284_A	324_H	0.577	0.24
92_A	310_E	0.576	0.24
366_S	369_R	0.575	0.24
253_P	256_A	0.574	0.24
82_G	88_S	0.572	0.24
173_D	366_S	0.569	0.23
208_E	249_V	0.568	0.23
234_G	321_R	0.563	0.23
109_E	322_D	0.562	0.23
227_D	258_S	0.560	0.23
312_L	320_S	0.559	0.23
76_F	81_E	0.558	0.23
109_E	113_A	0.558	0.23
154_V	236_A	0.557	0.23
321_R	324_H	0.557	0.23
107_D	141_H	0.555	0.23
113_A	150_M	0.554	0.23
230_I	278_N	0.549	0.22
202_E	298_D	0.548	0.22
295_P	354_S	0.547	0.22
310_E	314_A	0.547	0.22
120_Y	309_G	0.546	0.22
91_E	349_E	0.546	0.22
332_S	335_E	0.546	0.22
141_H	266_N	0.545	0.22
166_E	275_Q	0.544	0.22
213_Y	235_R	0.544	0.22
331_T	335_E	0.542	0.22
121_G	287_F	0.542	0.22
186_D	266_N	0.542	0.22
90_P	95_E	0.540	0.22
362_E	365_L	0.539	0.22
252_D	255_A	0.539	0.22
94_D	165_D	0.539	0.22
82_G	89_N	0.538	0.22
142_S	145_G	0.538	0.22
152_D	359_A	0.537	0.22
151_E	262_R	0.537	0.22
193_S	237_Q	0.536	0.22
80_N	94_D	0.534	0.22
343_L	360_L	0.533	0.22
303_G	357_Y	0.533	0.22
192_A	319_L	0.533	0.22
309_G	313_G	0.532	0.22
137_I	140_S	0.531	0.22
187_G	336_A	0.528	0.21
105_E	145_G	0.528	0.21
230_I	339_I	0.525	0.21
109_E	321_R	0.525	0.21
107_D	263_Y	0.523	0.21
302_D	349_E	0.522	0.21
82_G	336_A	0.522	0.21
94_D	366_S	0.521	0.21
266_N	326_Y	0.521	0.21
173_D	367_T	0.520	0.21
236_A	242_D	0.520	0.21
300_E	320_S	0.518	0.21
163_A	167_L	0.518	0.21
117_A	188_Q	0.517	0.21
79_T	275_Q	0.517	0.21
96_D	100_E	0.517	0.21
181_H	285_L	0.516	0.21
108_T	244_S	0.516	0.21
132_P	337_A	0.516	0.21
232_A	260_D	0.516	0.21
115_Y	335_E	0.514	0.21
88_S	151_E	0.508	0.20
250_F	257_I	0.506	0.20
80_N	305_T	0.506	0.20
117_A	338_F	0.505	0.20
206_I	252_D	0.503	0.20
111_R	161_A	0.502	0.20
218_T	227_D	0.501	0.20
205_T	222_E	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4f1vA	1	0.7018	100	0.404	Contact Map
4n13A	1	0.6438	100	0.563	Contact Map
1ixhA	1	0.6966	100	0.612	Contact Map
1pc3A	1	0.7203	100	0.615	Contact Map
4lvqA	1	0.6939	100	0.654	Contact Map
4jwoA	1	0.7177	100	0.656	Contact Map
4ombA	1	0.7335	100	0.658	Contact Map
4ecfA	1	0.6834	100	0.688	Contact Map
4exlA	1	0.6939	100	0.689	Contact Map
4q8rA	1	0.6332	100	0.697	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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