GREMLIN Database
Q9HML0 - Zinc-containing ferredoxin
UniProt: Q9HML0 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 106 (90)
Sequences: 549 (418)
Seq/√Len: 44.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
62_E65_E4.2281.00
15_D18_K4.1571.00
23_W32_L3.6481.00
18_K34_V3.4321.00
42_D45_I3.1741.00
21_D35_H2.9211.00
51_A54_E2.6571.00
100_D103_A2.5741.00
22_V33_G2.2211.00
20_H32_L1.8840.99
45_I100_D1.7880.98
64_V67_P1.7270.98
84_C87_C1.6610.97
88_M91_V1.6290.97
36_G43_F1.5520.96
20_H23_W1.5170.95
60_V63_W1.4940.95
89_L93_V1.4810.95
25_P28_E1.4440.94
39_V43_F1.4100.93
43_F76_A1.4030.93
53_L77_D1.3750.92
70_P76_A1.3080.90
85_I89_L1.2900.89
40_A81_E1.2890.89
91_V101_V1.2710.89
69_H72_S1.2120.86
18_K36_G1.1810.85
43_F75_K1.1640.84
71_E74_R1.1340.82
76_A95_P1.1330.82
60_V64_V1.1090.81
61_F64_V1.0990.80
55_D59_D1.0960.80
55_D86_D1.0530.77
86_D101_V1.0450.77
43_F103_A1.0360.76
88_M93_V1.0340.76
58_V85_I1.0100.74
27_E34_V1.0010.74
60_V83_Q0.9890.73
74_R80_N0.9850.72
21_D33_G0.9820.72
39_V75_K0.9820.72
55_D92_D0.9820.72
21_D97_D0.9560.70
15_D31_K0.9560.70
58_V93_V0.9530.70
89_L95_P0.9360.68
40_A101_V0.9350.68
68_D78_P0.9240.67
42_D100_D0.9220.67
55_D89_L0.9190.67
62_E67_P0.9150.67
16_T73_E0.9070.66
48_A77_D0.8690.63
60_V65_E0.8630.62
19_G25_P0.8420.60
81_E91_V0.8370.60
15_D36_G0.8370.60
74_R79_A0.8170.58
70_P74_R0.8130.58
44_D61_F0.7910.55
58_V83_Q0.7870.55
27_E48_A0.7860.55
33_G61_F0.7840.55
84_C98_A0.7670.53
89_L92_D0.7440.51
98_A101_V0.7330.50
61_F83_Q0.7310.50
17_H78_P0.7280.49
63_W66_T0.7260.49
42_D82_T0.7240.49
80_N84_C0.7200.49
42_D102_D0.7170.48
55_D93_V0.7130.48
56_C94_C0.6990.47
45_I98_A0.6960.46
61_F67_P0.6950.46
86_D89_L0.6940.46
39_V103_A0.6920.46
69_H74_R0.6670.44
48_A75_K0.6660.43
41_V57_P0.6600.43
70_P73_E0.6590.43
26_V69_H0.6500.42
59_D92_D0.6480.42
31_K44_D0.6450.41
51_A96_V0.6420.41
80_N87_C0.6420.41
90_C94_C0.6340.40
56_C90_C0.6340.40
48_A68_D0.6280.40
51_A95_P0.6260.40
17_H21_D0.6230.39
69_H73_E0.6150.39
26_V37_T0.6140.39
54_E82_T0.6140.39
16_T39_V0.6120.38
19_G28_E0.5970.37
45_I102_D0.5860.36
47_L69_H0.5820.36
52_C56_C0.5740.35
52_C94_C0.5740.35
22_V70_P0.5740.35
16_T59_D0.5730.35
14_V26_V0.5730.35
79_A93_V0.5720.35
53_L63_W0.5690.35
54_E86_D0.5660.34
47_L95_P0.5640.34
47_L50_G0.5620.34
51_A89_L0.5610.34
15_D34_V0.5600.34
55_D58_V0.5580.34
24_G44_D0.5530.33
15_D67_P0.5510.33
84_C90_C0.5470.33
25_P30_E0.5470.33
61_F65_E0.5440.32
84_C88_M0.5360.32
89_L101_V0.5310.31
53_L99_I0.5280.31
34_V99_I0.5270.31
31_K85_I0.5260.31
46_C94_C0.5180.30
46_C56_C0.5180.30
27_E77_D0.5170.30
77_D80_N0.5140.30
88_M101_V0.5110.30
52_C90_C0.5080.29
24_G31_K0.5070.29
15_D103_A0.5020.29
89_L96_V0.5000.29
44_D66_T0.5000.29
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1xerA 2 0.9623 99.5 0.528 Contact Map
3gyxB 1 0.5943 99.3 0.575 Contact Map
2c42A 2 1 99.3 0.576 Contact Map
1q16B 2 0.9151 99.3 0.578 Contact Map
3i9v9 1 0.7547 99.3 0.583 Contact Map
1hfeL 2 0.7925 99.3 0.583 Contact Map
1gteA 4 0.9245 99.3 0.586 Contact Map
5c4iB 1 0.8679 99.3 0.587 Contact Map
4uquA 2 1 99.3 0.587 Contact Map
1jnrB 1 0.5943 99.2 0.59 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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