Q9HHU6 - HALSA - GREMLIN Contacts

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Q9HHU6 - Vng6221h

UniProt:	Q9HHU6	Sequences: MTATSDVVTPYDLPYQAKAALCNYVPQLHGTYDAQELDDDHPVRLTNQAAEFDHSPERDYEFTWWVPQPGRGTNFWIPLRINPAQEGLWHDLGDGEASAGQLRLQRHRTSWTLHVTVEYPVEEPDYDATDDDDVTPVGFDIGEAHLLAGCAYEQGTPTDPLLINRGRARHLRKAMFTMLCRLQERDAAQWRIDERFDHSQNALTDIIEKASREAVEYAQQFEKPLIVLEDLAHIRESLDYGEWMNRRLHAWAFARVQQRIRDKAREAGIPVRYVRPDYTSQTCHECGHIGYRNGDEFRCQNEECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAATPTEQSQPRQMTLGEVGSEPPAGS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	374 (296)
Sequences:	4174 (2641)
Seq/√Len:	153.5

ECOLI - INSQ
HALSA - Q9HHU6 Q9HSW7 Q9HHG8 Q9HM87 Q9HSD4 Q9HHJ9 Q9HSZ6 Q9HSW9 Q9HSY4 Q9HHX8
SULSO - Q97XA4 Q97V53 Q97YI2 Q97XQ8 Q97V47 Q97YI5 Q97Y44 Q97XP1 Q97V25 Q7LXD9 Q97YW4 Q97UQ8 Q97YU1 Q7LXH2 Q97U68 Q97U51 Q97WY6 Q97X39 Q97YW9 Q97Z61 Q97XQ0 Q97Y67 Q97Y48 Q97WZ3 Q97XB6 Q7LXH6 Q97YF7 Q97U09 Q7LX59 Q97YK6 Y2105

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
205_D	209_K	5.059	1.00
284_H	314_N	4.234	1.00
232_A	237_S	3.662	1.00
264_A	271_V	3.562	1.00
227_V	323_H	2.978	1.00
257_Q	273_Y	2.932	1.00
146_L	256_V	2.881	1.00
306_V	309_Y	2.863	1.00
151_A	155_G	2.759	1.00
228_L	260_I	2.730	1.00
255_R	259_R	2.722	1.00
212_R	216_E	2.585	1.00
102_L	113_L	2.556	1.00
282_T	289_I	2.539	1.00
255_R	258_Q	2.431	1.00
322_R	325_P	2.425	1.00
75_F	78_P	2.362	1.00
75_F	79_L	2.340	1.00
215_V	264_A	2.285	1.00
290_G	293_N	2.280	1.00
274_V	319_I	2.184	1.00
278_Y	281_Q	2.127	1.00
281_Q	291_Y	2.121	1.00
208_E	259_R	2.109	1.00
100_G	118_E	2.088	1.00
298_R	308_E	2.075	1.00
171_L	188_A	2.027	1.00
261_R	273_Y	2.013	1.00
226_I	264_A	2.007	1.00
279_T	319_I	1.982	1.00
228_L	271_V	1.941	1.00
208_E	262_D	1.935	1.00
146_L	206_I	1.915	1.00
188_A	192_I	1.905	1.00
241_G	245_N	1.904	1.00
256_V	260_I	1.892	1.00
242_E	245_N	1.844	1.00
224_P	269_I	1.835	1.00
286_C	304_C	1.808	1.00
281_Q	293_N	1.808	1.00
211_S	259_R	1.781	1.00
204_T	255_R	1.758	1.00
208_E	263_K	1.752	1.00
183_Q	186_D	1.703	1.00
239_D	249_H	1.681	1.00
139_F	147_L	1.676	1.00
207_I	259_R	1.661	1.00
208_E	211_S	1.656	1.00
186_D	189_Q	1.632	1.00
261_R	265_R	1.618	1.00
297_F	309_Y	1.603	1.00
174_A	178_M	1.590	1.00
38_D	42_P	1.586	1.00
207_I	255_R	1.581	1.00
228_L	273_Y	1.574	1.00
286_C	299_C	1.550	1.00
285_E	306_V	1.533	1.00
145_H	148_A	1.522	1.00
175_M	189_Q	1.512	1.00
299_C	304_C	1.512	1.00
64_W	67_P	1.507	1.00
72_G	75_F	1.495	1.00
26_P	29_H	1.486	1.00
283_C	304_C	1.482	1.00
248_L	253_F	1.478	1.00
75_F	80_R	1.466	1.00
41_H	44_R	1.464	1.00
283_C	286_C	1.461	1.00
41_H	49_A	1.453	1.00
107_H	197_D	1.446	1.00
149_G	155_G	1.441	1.00
283_C	299_C	1.433	1.00
171_L	195_R	1.421	1.00
230_D	273_Y	1.418	1.00
28_L	66_V	1.396	1.00
16_Q	20_A	1.392	1.00
228_L	257_Q	1.389	1.00
297_F	306_V	1.386	1.00
288_H	300_Q	1.367	1.00
290_G	297_F	1.366	1.00
43_V	47_N	1.353	1.00
148_A	313_I	1.352	1.00
39_D	43_V	1.326	1.00
139_F	149_G	1.324	1.00
136_P	320_A	1.306	1.00
197_D	201_N	1.299	1.00
211_S	262_D	1.295	1.00
133_D	224_P	1.294	1.00
296_E	308_E	1.291	1.00
284_H	317_V	1.290	1.00
32_Y	35_Q	1.286	1.00
211_S	263_K	1.286	1.00
110_S	197_D	1.272	1.00
150_C	316_A	1.269	1.00
229_E	276_P	1.253	1.00
178_M	188_A	1.227	1.00
108_R	197_D	1.227	1.00
317_V	321_D	1.225	1.00
215_V	267_A	1.220	1.00
61_E	64_W	1.212	1.00
71_R	74_N	1.209	1.00
175_M	188_A	1.204	1.00
284_H	309_Y	1.202	1.00
42_P	46_T	1.195	1.00
261_R	271_V	1.193	1.00
148_A	156_T	1.184	1.00
43_V	46_T	1.182	1.00
138_G	320_A	1.176	1.00
141_I	253_F	1.176	1.00
181_R	185_R	1.168	1.00
290_G	300_Q	1.161	1.00
211_S	260_I	1.159	1.00
233_H	254_A	1.155	1.00
105_Q	114_H	1.152	1.00
137_V	149_G	1.151	1.00
17_A	20_A	1.128	1.00
295_D	311_A	1.122	1.00
14_P	17_A	1.121	1.00
259_R	262_D	1.107	0.99
16_Q	19_A	1.106	0.99
232_A	276_P	1.106	0.99
141_I	257_Q	1.105	0.99
28_L	31_T	1.101	0.99
239_D	245_N	1.099	0.99
31_T	34_A	1.086	0.99
212_R	267_A	1.082	0.99
34_A	37_L	1.078	0.99
227_V	319_I	1.070	0.99
143_E	251_W	1.066	0.99
63_T	66_V	1.059	0.99
211_S	256_V	1.058	0.99
274_V	323_H	1.054	0.99
35_Q	38_D	1.051	0.99
204_T	259_R	1.051	0.99
313_I	317_V	1.048	0.99
44_R	49_A	1.046	0.99
22_C	30_G	1.042	0.99
274_V	322_R	1.040	0.99
106_R	111_W	1.029	0.99
241_G	244_M	1.028	0.99
137_V	150_C	1.026	0.99
80_R	83_P	1.024	0.99
207_I	256_V	1.019	0.99
72_G	78_P	1.010	0.99
63_T	67_P	1.005	0.99
200_Q	204_T	1.005	0.99
264_A	269_I	1.004	0.99
309_Y	317_V	0.996	0.99
288_H	303_E	0.996	0.99
216_E	267_A	0.994	0.99
136_P	324_D	0.993	0.99
167_R	171_L	0.988	0.99
215_V	269_I	0.986	0.99
94_D	97_A	0.986	0.99
282_T	322_R	0.977	0.99
103_R	114_H	0.974	0.99
279_T	322_R	0.969	0.99
309_Y	313_I	0.967	0.99
263_K	266_E	0.959	0.98
44_R	47_N	0.957	0.98
179_L	182_L	0.956	0.98
25_V	28_L	0.954	0.98
284_H	306_V	0.952	0.98
28_L	32_Y	0.950	0.98
155_G	213_E	0.946	0.98
31_T	35_Q	0.943	0.98
107_H	110_S	0.943	0.98
230_D	276_P	0.937	0.98
207_I	211_S	0.930	0.98
136_P	225_L	0.927	0.98
110_S	201_N	0.921	0.98
34_A	38_D	0.916	0.98
258_Q	261_R	0.911	0.98
225_L	270_P	0.907	0.98
207_I	252_A	0.907	0.98
62_F	65_W	0.902	0.98
156_T	310_H	0.899	0.98
147_L	210_A	0.898	0.98
278_Y	322_R	0.896	0.98
294_G	297_F	0.895	0.98
297_F	311_A	0.895	0.98
28_L	33_D	0.891	0.98
322_R	326_W	0.890	0.98
72_G	77_I	0.885	0.97
37_L	41_H	0.880	0.97
185_R	189_Q	0.879	0.97
280_S	293_N	0.876	0.97
14_P	20_A	0.876	0.97
151_A	223_K	0.872	0.97
276_P	279_T	0.868	0.97
172_R	192_I	0.867	0.97
242_E	249_H	0.865	0.97
25_V	30_G	0.864	0.97
104_L	113_L	0.863	0.97
28_L	65_W	0.861	0.97
233_H	253_F	0.861	0.97
136_P	227_V	0.858	0.97
186_D	190_W	0.853	0.97
171_L	192_I	0.853	0.97
189_Q	193_D	0.849	0.97
97_A	117_V	0.848	0.97
137_V	223_K	0.848	0.97
282_T	318_N	0.843	0.97
143_E	247_R	0.840	0.96
101_Q	116_T	0.839	0.96
210_A	213_E	0.837	0.96
171_L	174_A	0.836	0.96
292_R	297_F	0.833	0.96
227_V	320_A	0.832	0.96
168_A	192_I	0.831	0.96
215_V	226_I	0.823	0.96
79_L	82_N	0.820	0.96
213_E	222_E	0.818	0.96
212_R	263_K	0.817	0.96
198_H	202_A	0.816	0.96
239_D	242_E	0.810	0.96
244_M	248_L	0.807	0.96
60_Y	63_T	0.807	0.96
230_D	257_Q	0.807	0.96
172_R	176_F	0.806	0.96
168_A	196_F	0.806	0.96
178_M	181_R	0.803	0.95
240_Y	244_M	0.803	0.95
132_D	135_T	0.801	0.95
145_H	156_T	0.800	0.95
182_L	185_R	0.795	0.95
89_W	92_L	0.794	0.95
195_R	199_S	0.791	0.95
216_E	225_L	0.788	0.95
25_V	29_H	0.787	0.95
27_Q	30_G	0.787	0.95
293_N	311_A	0.785	0.95
295_D	310_H	0.781	0.95
284_H	315_A	0.779	0.95
227_V	272_R	0.778	0.95
135_T	151_A	0.777	0.95
31_T	41_H	0.776	0.95
254_A	258_Q	0.775	0.95
281_Q	289_I	0.772	0.94
150_C	313_I	0.769	0.94
162_L	202_A	0.769	0.94
32_Y	36_E	0.767	0.94
82_N	85_Q	0.767	0.94
78_P	84_A	0.767	0.94
237_S	276_P	0.766	0.94
159_D	162_L	0.764	0.94
23_N	26_P	0.763	0.94
79_L	83_P	0.762	0.94
33_D	37_L	0.762	0.94
36_E	63_T	0.761	0.94
237_S	248_L	0.760	0.94
315_A	318_N	0.760	0.94
147_L	256_V	0.758	0.94
214_A	226_I	0.758	0.94
238_L	241_G	0.757	0.94
284_H	321_D	0.756	0.94
296_E	309_Y	0.755	0.94
41_H	47_N	0.753	0.94
164_N	247_R	0.751	0.94
71_R	76_W	0.751	0.94
325_P	328_E	0.750	0.94
206_I	210_A	0.748	0.93
54_H	60_Y	0.748	0.93
170_H	174_A	0.747	0.93
16_Q	23_N	0.744	0.93
31_T	37_L	0.744	0.93
56_P	60_Y	0.742	0.93
144_A	148_A	0.739	0.93
178_M	191_R	0.736	0.93
168_A	199_S	0.734	0.93
135_T	224_P	0.732	0.93
31_T	38_D	0.729	0.93
15_Y	20_A	0.729	0.93
323_H	327_G	0.729	0.93
241_G	249_H	0.729	0.93
156_T	313_I	0.727	0.92
175_M	192_I	0.724	0.92
225_L	272_R	0.724	0.92
35_Q	39_D	0.723	0.92
290_G	294_G	0.723	0.92
56_P	59_D	0.722	0.92
262_D	266_E	0.721	0.92
31_T	44_R	0.718	0.92
141_I	147_L	0.717	0.92
40_D	45_L	0.714	0.92
28_L	35_Q	0.714	0.92
87_G	90_H	0.713	0.92
174_A	177_T	0.709	0.91
294_G	311_A	0.707	0.91
324_D	328_E	0.706	0.91
120_P	125_D	0.705	0.91
191_R	194_E	0.703	0.91
288_H	293_N	0.703	0.91
54_H	57_E	0.702	0.91
22_C	25_V	0.702	0.91
317_V	320_A	0.697	0.91
72_G	79_L	0.696	0.91
28_L	34_A	0.696	0.91
178_M	182_L	0.694	0.91
137_V	226_I	0.692	0.90
146_L	251_W	0.691	0.90
162_L	165_R	0.690	0.90
15_Y	18_K	0.683	0.90
245_N	249_H	0.680	0.90
264_A	267_A	0.672	0.89
204_T	208_E	0.666	0.89
144_A	295_D	0.666	0.89
29_H	33_D	0.666	0.89
313_I	316_A	0.665	0.89
25_V	34_A	0.657	0.88
278_Y	282_T	0.654	0.88
62_F	66_V	0.653	0.88
14_P	19_A	0.650	0.88
137_V	151_A	0.650	0.88
163_I	246_R	0.647	0.87
290_G	311_A	0.646	0.87
231_L	276_P	0.643	0.87
107_H	112_T	0.640	0.87
314_N	318_N	0.639	0.87
30_G	34_A	0.635	0.86
288_H	297_F	0.633	0.86
27_Q	31_T	0.633	0.86
140_D	280_S	0.633	0.86
29_H	32_Y	0.631	0.86
134_V	224_P	0.629	0.86
161_L	165_R	0.629	0.86
199_S	250_A	0.627	0.86
15_Y	19_A	0.626	0.86
140_D	312_D	0.626	0.86
168_A	176_F	0.622	0.85
77_I	82_N	0.622	0.85
175_M	178_M	0.621	0.85
171_L	175_M	0.618	0.85
33_D	36_E	0.614	0.84
257_Q	261_R	0.613	0.84
106_R	112_T	0.611	0.84
297_F	300_Q	0.610	0.84
275_R	278_Y	0.607	0.84
83_P	87_G	0.606	0.84
184_E	187_A	0.606	0.84
169_R	172_R	0.605	0.84
309_Y	314_N	0.602	0.83
27_Q	66_V	0.601	0.83
145_H	158_T	0.601	0.83
196_F	203_L	0.601	0.83
289_I	292_R	0.600	0.83
319_I	322_R	0.596	0.83
293_N	297_F	0.595	0.83
201_N	204_T	0.594	0.82
159_D	251_W	0.592	0.82
89_W	93_G	0.591	0.82
207_I	210_A	0.589	0.82
60_Y	65_W	0.588	0.82
164_N	246_R	0.587	0.82
121_V	265_R	0.587	0.82
321_D	324_D	0.586	0.82
70_G	75_F	0.584	0.81
321_D	326_W	0.581	0.81
201_N	205_D	0.581	0.81
285_E	288_H	0.580	0.81
138_G	150_C	0.580	0.81
169_R	173_K	0.580	0.81
81_I	84_A	0.579	0.81
26_P	67_P	0.576	0.80
138_G	316_A	0.576	0.80
241_G	248_L	0.575	0.80
142_G	148_A	0.575	0.80
40_D	44_R	0.575	0.80
112_T	197_D	0.575	0.80
30_G	33_D	0.574	0.80
176_F	192_I	0.574	0.80
38_D	41_H	0.572	0.80
144_A	310_H	0.571	0.80
36_E	40_D	0.570	0.80
169_R	177_T	0.569	0.80
243_W	247_R	0.569	0.80
32_Y	38_D	0.566	0.79
285_E	317_V	0.566	0.79
244_M	247_R	0.565	0.79
135_T	223_K	0.564	0.79
33_D	43_V	0.564	0.79
48_Q	51_E	0.563	0.79
179_L	196_F	0.562	0.79
91_D	94_D	0.561	0.79
209_K	212_R	0.560	0.79
22_C	28_L	0.559	0.78
14_P	18_K	0.559	0.78
19_A	22_C	0.556	0.78
174_A	188_A	0.556	0.78
22_C	31_T	0.555	0.78
180_C	185_R	0.554	0.78
33_D	41_H	0.553	0.78
75_F	113_L	0.553	0.78
259_R	263_K	0.552	0.78
173_K	176_F	0.551	0.77
100_G	116_T	0.547	0.77
272_R	323_H	0.545	0.77
282_T	297_F	0.544	0.77
69_P	76_W	0.543	0.76
36_E	62_F	0.542	0.76
233_H	248_L	0.541	0.76
81_I	85_Q	0.540	0.76
23_N	27_Q	0.537	0.76
121_V	266_E	0.535	0.75
223_K	269_I	0.534	0.75
74_N	79_L	0.534	0.75
34_A	47_N	0.533	0.75
298_R	309_Y	0.533	0.75
143_E	238_L	0.532	0.75
169_R	174_A	0.531	0.75
25_V	33_D	0.530	0.75
171_L	178_M	0.530	0.75
145_H	310_H	0.529	0.75
60_Y	106_R	0.529	0.75
185_R	188_A	0.528	0.74
227_V	322_R	0.528	0.74
70_G	74_N	0.526	0.74
106_R	109_T	0.524	0.74
203_L	250_A	0.524	0.74
172_R	196_F	0.523	0.74
169_R	176_F	0.521	0.74
149_G	152_Y	0.521	0.74
71_R	77_I	0.521	0.74
199_S	203_L	0.520	0.73
173_K	177_T	0.520	0.73
41_H	46_T	0.517	0.73
184_E	191_R	0.516	0.73
237_S	244_M	0.516	0.73
28_L	64_W	0.516	0.73
21_L	24_Y	0.516	0.73
237_S	240_Y	0.516	0.73
51_E	54_H	0.515	0.73
62_F	67_P	0.513	0.72
147_L	228_L	0.511	0.72
196_F	200_Q	0.510	0.72
175_M	185_R	0.510	0.72
77_I	80_R	0.508	0.72
172_R	175_M	0.508	0.72
226_I	260_I	0.505	0.71
179_L	185_R	0.504	0.71
169_R	192_I	0.501	0.71
189_Q	192_I	0.501	0.71
34_A	39_D	0.500	0.70
289_I	293_N	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nu0A	1	0.3503	96.1	0.917	Contact Map
1vhxA	2	0.369	96	0.917	Contact Map
1iv0A	1	0.262	95.9	0.918	Contact Map
4ep4A	2	0.4332	83.3	0.941	Contact Map
1hjrA	2	0.4225	76.9	0.945	Contact Map
2k4xA	1	0.1417	75.1	0.946	Contact Map
1qypA	1	0.115	74.6	0.946	Contact Map
3j20Y	1	0.1283	64.1	0.95	Contact Map
4aybP	1	0.107	62.2	0.95	Contact Map
1twfI	1	0.2487	40.8	0.956	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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