Q9HHQ8 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q9HHQ8 - Glycerol-3-phosphate-binding protein

UniProt:	Q9HHQ8	Sequences: MAPTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDELATTIEQMAADFSAQTDGVSINPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIALDSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMPFNSSNTIMLYNKRAFEAAGLDPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGRPTETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSLVAGAKQRGFELGSAYLPTPTGDNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQLRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQETTDTPATRGAVMGAFPEVRTINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	463 (403)
Sequences:	29105 (23249)
Seq/√Len:	1158.1

ECOLI - UGPB YCJN MALE YDCS YNJB POTF POTD
BACSU - YESO ARAN YURO CYCB YTCQ MDXE LIPO MSME
HALSA - Q9HHQ8 Q9HP00 Q9HR87 Q9HNZ3 Q9HR04 Q9HMT5
SULSO - Q97YY1 Q97UZ1 Q97ZC3 Q97VC2 Q97UF5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
50_T	82_N	3.709	1.00
436_S	439_A	3.554	1.00
126_T	344_K	3.330	1.00
252_R	438_S	3.274	1.00
173_R	310_E	3.253	1.00
259_T	263_N	3.225	1.00
50_T	80_S	2.869	1.00
127_P	155_T	2.857	1.00
172_K	312_G	2.830	1.00
52_D	82_N	2.780	1.00
256_Q	260_D	2.710	1.00
76_T	349_A	2.660	1.00
193_R	260_D	2.636	1.00
172_K	176_E	2.541	1.00
260_D	264_A	2.508	1.00
66_E	70_A	2.505	1.00
197_S	264_A	2.495	1.00
188_T	191_E	2.420	1.00
438_S	442_A	2.383	1.00
170_Y	312_G	2.359	1.00
71_D	74_A	2.332	1.00
79_V	346_A	2.292	1.00
72_F	349_A	2.245	1.00
442_A	446_T	2.245	1.00
91_E	94_N	2.206	1.00
73_S	80_S	2.182	1.00
249_D	253_A	2.180	1.00
349_A	352_A	2.178	1.00
151_R	156_L	2.157	1.00
175_F	289_M	2.139	1.00
48_T	80_S	2.101	1.00
129_D	155_T	2.089	1.00
194_T	198_T	2.076	1.00
341_T	344_K	2.043	1.00
52_D	84_V	2.043	1.00
180_L	195_A	2.040	1.00
144_P	148_N	2.038	1.00
445_D	449_T	2.037	1.00
247_D	442_A	2.020	1.00
356_Q	359_Q	2.012	1.00
435_M	443_E	2.003	1.00
343_E	346_A	1.998	1.00
197_S	201_S	1.961	1.00
67_Q	70_A	1.954	1.00
173_R	177_A	1.938	1.00
71_D	353_Y	1.915	1.00
191_E	194_T	1.913	1.00
54_W	99_A	1.908	1.00
256_Q	437_V	1.905	1.00
446_T	450_S	1.901	1.00
70_A	74_A	1.897	1.00
274_A	277_E	1.878	1.00
429_S	434_D	1.874	1.00
393_R	397_D	1.865	1.00
253_A	256_Q	1.858	1.00
71_D	75_Q	1.812	1.00
107_G	343_E	1.806	1.00
141_D	375_S	1.801	1.00
148_N	151_R	1.787	1.00
429_S	435_M	1.772	1.00
194_T	197_S	1.742	1.00
125_F	334_W	1.736	1.00
109_V	336_P	1.716	1.00
24_A	27_T	1.706	1.00
439_A	443_E	1.690	1.00
131_L	348_G	1.686	1.00
256_Q	438_S	1.674	1.00
345_Q	349_A	1.664	1.00
198_T	202_N	1.663	1.00
443_E	447_Q	1.646	1.00
190_A	193_R	1.635	1.00
49_I	346_A	1.625	1.00
158_S	332_S	1.612	1.00
430_I	440_G	1.580	1.00
232_N	243_E	1.572	1.00
88_G	91_E	1.570	1.00
361_L	365_R	1.566	1.00
421_T	425_E	1.564	1.00
150_Y	332_S	1.564	1.00
69_A	73_S	1.562	1.00
422_I	447_Q	1.558	1.00
25_G	28_A	1.556	1.00
70_A	73_S	1.550	1.00
252_R	437_V	1.543	1.00
69_A	350_F	1.533	1.00
62_A	66_E	1.526	1.00
252_R	256_Q	1.523	1.00
193_R	197_S	1.512	1.00
71_D	362_R	1.503	1.00
439_A	442_A	1.482	1.00
168_M	314_A	1.479	1.00
193_R	261_M	1.476	1.00
442_A	445_D	1.474	1.00
172_K	310_E	1.451	1.00
186_P	191_E	1.450	1.00
73_S	77_D	1.450	1.00
190_A	194_T	1.444	1.00
170_Y	314_A	1.443	1.00
100_S	105_P	1.439	1.00
193_R	264_A	1.435	1.00
199_I	288_A	1.430	1.00
174_A	288_A	1.429	1.00
127_P	130_S	1.429	1.00
187_T	191_E	1.425	1.00
259_T	430_I	1.418	1.00
443_E	446_T	1.416	1.00
247_D	445_D	1.407	1.00
357_P	361_L	1.402	1.00
126_T	337_D	1.398	1.00
282_F	311_L	1.397	1.00
197_S	266_L	1.389	1.00
174_A	199_I	1.389	1.00
281_A	286_Q	1.371	1.00
49_I	343_E	1.370	1.00
335_V	351_I	1.365	1.00
257_W	261_M	1.360	1.00
397_D	400_Q	1.357	1.00
426_L	443_E	1.355	1.00
359_Q	362_R	1.352	1.00
95_Q	99_A	1.349	1.00
107_G	341_T	1.339	1.00
435_M	440_G	1.332	1.00
72_F	353_Y	1.327	1.00
426_L	435_M	1.325	1.00
250_A	253_A	1.312	1.00
55_H	83_P	1.304	1.00
196_A	289_M	1.304	1.00
362_R	366_N	1.304	1.00
257_W	260_D	1.300	1.00
72_F	79_V	1.299	1.00
430_I	437_V	1.299	1.00
48_T	78_G	1.299	1.00
67_Q	71_D	1.282	1.00
120_L	157_N	1.272	1.00
69_A	83_P	1.268	1.00
178_A	199_I	1.267	1.00
168_M	289_M	1.262	1.00
210_T	287_A	1.261	1.00
200_V	208_G	1.260	1.00
232_N	242_T	1.252	1.00
446_T	449_T	1.243	1.00
72_F	350_F	1.235	1.00
72_F	76_T	1.226	1.00
193_R	257_W	1.218	1.00
63_T	66_E	1.210	1.00
111_L	334_W	1.208	1.00
341_T	347_A	1.206	1.00
167_I	313_S	1.205	1.00
426_L	429_S	1.205	1.00
180_L	198_T	1.202	1.00
135_D	352_A	1.200	1.00
150_Y	156_L	1.198	1.00
190_A	320_T	1.186	1.00
22_G	26_L	1.182	1.00
79_V	349_A	1.179	1.00
108_I	351_I	1.176	1.00
126_T	341_T	1.175	1.00
447_Q	450_S	1.169	1.00
260_D	263_N	1.162	1.00
394_T	397_D	1.156	1.00
375_S	378_D	1.151	1.00
123_N	337_D	1.145	1.00
200_V	266_L	1.136	1.00
353_Y	359_Q	1.121	1.00
346_A	349_A	1.115	1.00
426_L	444_M	1.108	1.00
280_Q	284_T	1.105	1.00
425_E	447_Q	1.101	1.00
73_S	76_T	1.099	1.00
181_D	185_P	1.098	1.00
195_A	198_T	1.098	1.00
176_E	181_D	1.098	1.00
350_F	354_L	1.097	1.00
63_T	67_Q	1.093	1.00
429_S	443_E	1.088	1.00
174_A	178_A	1.086	1.00
130_S	133_P	1.080	1.00
175_F	180_L	1.079	1.00
337_D	344_K	1.077	1.00
72_F	346_A	1.076	1.00
435_M	439_A	1.074	1.00
348_G	352_A	1.073	1.00
192_L	196_A	1.068	1.00
15_R	27_T	1.060	1.00
147_L	151_R	1.056	1.00
108_I	347_A	1.054	1.00
105_P	336_P	1.051	1.00
199_I	204_Q	1.049	1.00
25_G	29_F	1.048	1.00
223_F	228_Q	1.048	1.00
397_D	401_E	1.047	1.00
173_R	309_F	1.046	1.00
350_F	353_Y	1.046	1.00
51_L	350_F	1.045	1.00
120_L	152_T	1.045	1.00
171_N	174_A	1.035	1.00
422_I	425_E	1.029	1.00
259_T	437_V	1.027	1.00
419_V	448_A	1.027	1.00
175_F	195_A	1.026	1.00
174_A	177_A	1.023	1.00
53_F	333_L	1.022	1.00
26_L	29_F	1.022	1.00
277_E	280_Q	1.016	1.00
21_A	27_T	1.016	1.00
196_A	266_L	1.015	1.00
171_N	309_F	1.014	1.00
192_L	289_M	1.011	1.00
253_A	257_W	1.000	1.00
192_L	209_L	0.996	1.00
32_C	36_N	0.992	1.00
252_R	441_L	0.987	1.00
96_S	109_V	0.986	1.00
21_A	24_A	0.984	1.00
335_V	347_A	0.983	1.00
373_R	376_V	0.983	1.00
139_R	147_L	0.980	1.00
335_V	348_G	0.979	1.00
357_P	375_S	0.976	1.00
249_D	252_R	0.973	1.00
396_F	400_Q	0.969	1.00
109_V	334_W	0.968	1.00
195_A	289_M	0.967	1.00
20_G	24_A	0.957	1.00
244_T	449_T	0.954	1.00
21_A	25_G	0.954	1.00
336_P	341_T	0.953	1.00
81_I	350_F	0.952	1.00
226_Q	253_A	0.951	1.00
178_A	202_N	0.950	1.00
180_L	199_I	0.949	1.00
100_S	124_A	0.949	1.00
362_R	365_R	0.944	1.00
32_C	35_L	0.943	1.00
344_K	348_G	0.940	1.00
341_T	345_Q	0.938	1.00
71_D	358_D	0.937	1.00
67_Q	366_N	0.937	1.00
17_V	24_A	0.936	1.00
49_I	78_G	0.936	1.00
256_Q	259_T	0.935	1.00
108_I	350_F	0.935	1.00
281_A	287_A	0.931	1.00
141_D	373_R	0.927	1.00
299_S	302_A	0.925	1.00
207_Y	269_N	0.922	1.00
358_D	361_L	0.921	1.00
198_T	201_S	0.911	1.00
173_R	176_E	0.911	1.00
103_G	338_A	0.910	1.00
255_Y	430_I	0.906	1.00
68_M	71_D	0.905	1.00
54_W	106_P	0.904	1.00
292_D	296_N	0.900	1.00
129_D	133_P	0.899	1.00
147_L	156_L	0.898	1.00
54_W	86_K	0.894	1.00
440_G	444_M	0.893	1.00
93_L	115_G	0.893	1.00
203_T	206_E	0.891	1.00
425_E	429_S	0.890	1.00
418_E	421_T	0.889	1.00
199_I	203_T	0.887	1.00
69_A	81_I	0.882	1.00
95_Q	98_Q	0.879	1.00
28_A	31_G	0.875	1.00
167_I	395_A	0.874	1.00
158_S	334_W	0.873	1.00
426_L	447_Q	0.872	1.00
138_D	141_D	0.864	1.00
131_L	345_Q	0.857	1.00
441_L	445_D	0.856	1.00
67_Q	362_R	0.855	1.00
133_P	139_R	0.855	1.00
178_A	198_T	0.853	1.00
176_E	310_E	0.851	1.00
422_I	426_L	0.847	1.00
98_Q	102_A	0.847	1.00
64_T	67_Q	0.847	1.00
20_G	27_T	0.845	1.00
23_T	26_L	0.844	1.00
15_R	28_A	0.844	1.00
201_S	204_Q	0.840	1.00
144_P	374_Q	0.835	1.00
436_S	440_G	0.834	1.00
129_D	156_L	0.833	1.00
109_V	125_F	0.833	1.00
24_A	28_A	0.831	1.00
213_N	216_W	0.830	1.00
185_P	314_A	0.828	1.00
129_D	151_R	0.825	1.00
422_I	444_M	0.824	1.00
120_L	125_F	0.824	1.00
175_F	199_I	0.821	1.00
17_V	20_G	0.821	1.00
193_R	266_L	0.818	1.00
244_T	445_D	0.818	1.00
143_L	374_Q	0.816	1.00
174_A	204_Q	0.816	1.00
132_L	156_L	0.815	1.00
169_L	292_D	0.815	1.00
22_G	28_A	0.815	1.00
29_F	32_C	0.815	1.00
361_L	376_V	0.813	1.00
245_N	248_S	0.811	1.00
20_G	26_L	0.810	1.00
161_F	333_L	0.809	1.00
51_L	346_A	0.808	1.00
22_G	25_G	0.808	1.00
125_F	157_N	0.807	1.00
223_F	251_G	0.804	1.00
53_F	108_I	0.802	1.00
347_A	351_I	0.801	1.00
75_Q	356_Q	0.792	1.00
246_F	251_G	0.790	1.00
232_N	245_N	0.790	1.00
86_K	95_Q	0.788	1.00
426_L	440_G	0.788	1.00
261_M	266_L	0.783	1.00
75_Q	358_D	0.782	1.00
18_L	25_G	0.779	1.00
126_T	336_P	0.778	1.00
358_D	362_R	0.775	1.00
99_A	104_D	0.774	1.00
23_T	27_T	0.773	1.00
265_D	269_N	0.773	1.00
78_G	349_A	0.771	1.00
307_R	311_L	0.771	1.00
421_T	424_E	0.770	1.00
15_R	26_L	0.764	1.00
206_E	286_Q	0.763	1.00
255_Y	441_L	0.761	1.00
126_T	130_S	0.759	1.00
15_R	25_G	0.759	1.00
73_S	78_G	0.759	1.00
185_P	195_A	0.758	1.00
138_D	352_A	0.757	1.00
224_A	229_L	0.756	1.00
229_L	233_N	0.756	1.00
137_I	140_E	0.756	1.00
126_T	335_V	0.755	1.00
276_D	279_R	0.754	1.00
441_L	444_M	0.754	1.00
393_R	396_F	0.754	1.00
127_P	157_N	0.752	1.00
73_S	81_I	0.749	1.00
51_L	343_E	0.744	1.00
255_Y	440_G	0.744	1.00
126_T	131_L	0.744	1.00
144_P	147_L	0.743	1.00
187_T	318_T	0.742	1.00
200_V	203_T	0.740	1.00
181_D	187_T	0.740	1.00
20_G	23_T	0.739	1.00
21_A	28_A	0.739	1.00
219_I	223_F	0.735	1.00
49_I	79_V	0.733	1.00
17_V	28_A	0.731	1.00
170_Y	185_P	0.731	1.00
23_T	28_A	0.731	1.00
75_Q	353_Y	0.730	1.00
71_D	359_Q	0.729	1.00
178_A	195_A	0.729	1.00
345_Q	348_G	0.729	1.00
142_F	355_T	0.725	1.00
17_V	27_T	0.722	1.00
361_L	379_R	0.722	1.00
51_L	347_A	0.721	1.00
177_A	204_Q	0.721	1.00
199_I	206_E	0.719	1.00
425_E	428_V	0.719	1.00
280_Q	283_L	0.718	1.00
341_T	346_A	0.715	1.00
15_R	24_A	0.714	1.00
151_R	154_G	0.714	1.00
17_V	21_A	0.713	1.00
390_P	393_R	0.713	1.00
229_L	232_N	0.713	1.00
196_A	208_G	0.712	1.00
344_K	347_A	0.708	1.00
200_V	265_D	0.708	1.00
180_L	186_P	0.707	1.00
276_D	280_Q	0.704	1.00
416_F	420_R	0.702	1.00
32_C	37_T	0.702	1.00
100_S	336_P	0.701	1.00
139_R	151_R	0.699	1.00
200_V	204_Q	0.699	1.00
145_S	148_N	0.699	1.00
181_D	195_A	0.697	1.00
420_R	424_E	0.697	1.00
130_S	348_G	0.692	1.00
178_A	203_T	0.691	1.00
268_L	271_G	0.691	1.00
423_N	444_M	0.690	1.00
226_Q	257_W	0.689	1.00
196_A	200_V	0.687	1.00
246_F	448_A	0.686	1.00
68_M	353_Y	0.685	1.00
228_Q	251_G	0.685	1.00
94_N	98_Q	0.685	1.00
189_L	257_W	0.684	1.00
178_A	288_A	0.682	1.00
389_H	393_R	0.682	1.00
193_R	196_A	0.681	1.00
108_I	333_L	0.680	1.00
335_V	341_T	0.680	1.00
268_L	281_A	0.679	1.00
68_M	359_Q	0.679	1.00
318_T	321_G	0.672	1.00
248_S	251_G	0.672	1.00
298_V	302_A	0.669	1.00
18_L	21_A	0.667	1.00
430_I	435_M	0.666	1.00
199_I	289_M	0.666	1.00
18_L	22_G	0.662	1.00
19_A	26_L	0.658	1.00
440_G	443_E	0.658	1.00
28_A	32_C	0.658	1.00
304_A	309_F	0.656	1.00
31_G	34_A	0.656	1.00
357_P	373_R	0.653	1.00
171_N	310_E	0.651	1.00
195_A	199_I	0.650	1.00
224_A	403_T	0.650	1.00
200_V	206_E	0.650	1.00
131_L	344_K	0.649	1.00
130_S	155_T	0.647	1.00
374_Q	378_D	0.647	1.00
387_D	390_P	0.645	1.00
47_S	78_G	0.642	1.00
141_D	357_P	0.642	1.00
243_E	449_T	0.641	1.00
135_D	348_G	0.640	1.00
118_I	122_S	0.640	1.00
126_T	348_G	0.639	1.00
197_S	200_V	0.637	1.00
376_V	379_R	0.637	1.00
185_P	191_E	0.637	1.00
143_L	377_I	0.636	1.00
399_L	402_T	0.633	1.00
68_M	354_L	0.633	1.00
415_A	418_E	0.633	1.00
76_T	79_V	0.632	1.00
54_W	84_V	0.632	1.00
18_L	24_A	0.630	1.00
189_L	193_R	0.630	1.00
234_D	242_T	0.629	1.00
437_V	440_G	0.627	1.00
30_A	33_G	0.626	1.00
221_Q	224_A	0.625	1.00
131_L	135_D	0.622	1.00
278_A	290_L	0.622	1.00
253_A	319_P	0.621	1.00
214_H	217_M	0.620	1.00
35_L	38_A	0.619	1.00
105_P	338_A	0.618	1.00
116_T	158_S	0.616	1.00
32_C	38_A	0.615	1.00
170_Y	175_F	0.613	1.00
186_P	195_A	0.613	1.00
200_V	207_Y	0.611	1.00
304_A	307_R	0.608	1.00
27_T	30_A	0.607	1.00
73_S	79_V	0.606	1.00
18_L	28_A	0.602	1.00
130_S	134_E	0.601	1.00
119_A	125_F	0.601	1.00
19_A	23_T	0.601	1.00
15_R	21_A	0.600	1.00
150_Y	158_S	0.599	1.00
142_F	147_L	0.598	1.00
84_V	99_A	0.596	1.00
117_R	121_D	0.596	1.00
208_G	211_W	0.595	1.00
177_A	203_T	0.594	1.00
48_T	77_D	0.593	1.00
51_L	341_T	0.592	1.00
177_A	202_N	0.592	1.00
245_N	445_D	0.591	1.00
111_L	119_A	0.590	1.00
283_L	303_G	0.590	1.00
177_A	206_E	0.588	1.00
403_T	406_P	0.588	1.00
437_V	441_L	0.587	1.00
19_A	22_G	0.584	1.00
91_E	95_Q	0.582	1.00
259_T	436_S	0.581	1.00
297_L	301_V	0.579	1.00
263_N	433_G	0.577	1.00
169_L	313_S	0.577	1.00
417_P	421_T	0.576	1.00
48_T	79_V	0.575	1.00
428_V	432_T	0.574	1.00
259_T	262_A	0.572	1.00
398_Q	401_E	0.571	1.00
248_S	252_R	0.571	1.00
59_D	63_T	0.571	1.00
19_A	25_G	0.571	1.00
320_T	323_N	0.570	1.00
206_E	210_T	0.569	1.00
207_Y	268_L	0.568	1.00
281_A	284_T	0.568	1.00
128_I	351_I	0.567	1.00
16_A	27_T	0.566	1.00
392_F	396_F	0.565	1.00
299_S	303_G	0.565	1.00
30_A	34_A	0.565	1.00
438_S	441_L	0.562	1.00
196_A	261_M	0.562	1.00
248_S	445_D	0.562	1.00
223_F	254_V	0.561	1.00
15_R	18_L	0.561	1.00
252_R	442_A	0.561	1.00
26_L	30_A	0.560	1.00
129_D	348_G	0.560	1.00
115_G	118_I	0.559	1.00
415_A	419_V	0.558	1.00
97_L	118_I	0.557	1.00
22_G	27_T	0.557	1.00
273_E	281_A	0.556	1.00
52_D	107_G	0.556	1.00
394_T	398_Q	0.555	1.00
116_T	120_L	0.554	1.00
171_N	285_E	0.553	1.00
93_L	118_I	0.553	1.00
124_A	127_P	0.553	1.00
180_L	185_P	0.553	1.00
56_V	92_T	0.552	1.00
132_L	135_D	0.551	1.00
282_F	309_F	0.550	1.00
72_F	81_I	0.549	1.00
68_M	362_R	0.548	1.00
197_S	260_D	0.548	1.00
53_F	83_P	0.548	1.00
123_N	126_T	0.548	1.00
66_E	83_P	0.548	1.00
51_L	107_G	0.547	1.00
307_R	310_E	0.547	1.00
46_S	78_G	0.545	1.00
126_T	338_A	0.544	1.00
333_L	354_L	0.544	1.00
258_W	262_A	0.544	1.00
213_N	217_M	0.543	1.00
116_T	125_F	0.543	1.00
169_L	297_L	0.543	1.00
53_F	69_A	0.542	1.00
52_D	99_A	0.541	1.00
84_V	95_Q	0.540	1.00
31_G	35_L	0.538	1.00
120_L	123_N	0.538	1.00
176_E	179_G	0.538	1.00
199_I	202_N	0.536	1.00
60_E	63_T	0.536	1.00
426_L	430_I	0.533	1.00
318_T	324_S	0.532	1.00
254_V	258_W	0.532	1.00
174_A	206_E	0.531	1.00
278_A	287_A	0.531	1.00
360_Q	372_V	0.531	1.00
92_T	96_S	0.530	1.00
89_Y	93_L	0.529	1.00
333_L	351_I	0.529	1.00
207_Y	210_T	0.528	1.00
134_E	345_Q	0.524	1.00
250_A	254_V	0.524	1.00
131_L	134_E	0.523	1.00
34_A	37_T	0.522	1.00
374_Q	377_I	0.522	1.00
220_E	224_A	0.522	1.00
16_A	23_T	0.521	1.00
222_Q	254_V	0.521	1.00
72_F	77_D	0.519	1.00
99_A	106_P	0.518	1.00
46_S	49_I	0.517	1.00
141_D	374_Q	0.517	1.00
33_G	36_N	0.517	1.00
277_E	281_A	0.517	1.00
168_M	291_W	0.517	1.00
319_P	322_D	0.516	1.00
180_L	288_A	0.513	1.00
51_L	81_I	0.511	1.00
175_F	288_A	0.511	1.00
282_F	290_L	0.510	1.00
20_G	25_G	0.510	1.00
402_T	405_T	0.510	1.00
76_T	346_A	0.509	1.00
173_R	285_E	0.509	1.00
59_D	62_A	0.507	1.00
251_G	445_D	0.507	1.00
234_D	243_E	0.506	1.00
94_N	97_L	0.506	1.00
53_F	110_Q	0.505	1.00
352_A	356_Q	0.504	1.00
51_L	108_I	0.503	1.00
93_L	119_A	0.503	1.00
29_F	34_A	0.503	1.00
178_A	204_Q	0.503	1.00
261_M	267_Y	0.502	1.00
174_A	203_T	0.502	1.00
16_A	19_A	0.501	1.00
27_T	31_G	0.501	1.00
268_L	273_E	0.501	1.00
429_S	440_G	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r9fA	1	0.8164	100	0.183	Contact Map
4mfiA	1	0.8575	100	0.191	Contact Map
3uorA	1	0.8467	100	0.204	Contact Map
4r2fA	1	0.8078	100	0.205	Contact Map
4r6kA	1	0.8467	100	0.214	Contact Map
2w7yA	1	0.8143	100	0.249	Contact Map
3vxbA	1	0.8186	100	0.255	Contact Map
4ovjA	1	0.8272	100	0.264	Contact Map
3k01A	1	0.8337	100	0.269	Contact Map
4r6hA	1	0.8337	100	0.27	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0125 seconds.