GREMLIN Database
COX1 - Cytochrome c oxidase polypeptide 1
UniProt: P33518 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 593 (505)
Sequences: 4166 (1434)
Seq/√Len: 63.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
481_M507_A5.2021.00
78_Y157_F5.0681.00
311_I444_A4.5201.00
389_A463_A4.3251.00
450_F528_S4.1391.00
82_A164_A3.9751.00
411_L426_V3.7911.00
304_P441_A3.7591.00
469_T517_S3.6031.00
242_T330_T3.5811.00
316_S380_M3.5661.00
232_G235_D3.4951.00
389_A460_K3.4541.00
245_T334_G3.3161.00
323_F327_V3.1861.00
89_S113_L3.0681.00
223_I244_L2.9571.00
138_I223_I2.9311.00
476_A510_G2.8951.00
238_I320_L2.8341.00
307_I445_A2.8301.00
447_Y466_H2.7631.00
233_W236_L2.6861.00
73_I136_Y2.6661.00
432_F475_N2.6591.00
105_I113_L2.6271.00
312_L398_V2.5971.00
181_T198_V2.5631.00
224_F233_W2.4961.00
185_M285_W2.4581.00
61_R70_D2.4291.00
380_M391_M2.4011.00
347_T421_H2.3701.00
101_S495_T2.3061.00
459_Q527_T2.2741.00
336_L365_I2.2631.00
119_I185_M2.2501.00
315_F448_Y2.2431.00
125_F439_G2.2341.00
396_G471_L2.2261.00
469_T520_I2.2181.00
314_K448_Y2.2011.00
473_G513_L2.1791.00
366_S409_V2.1541.00
393_F466_H2.1361.00
461_R465_A2.1291.00
501_A505_R2.1091.00
205_L261_L2.0751.00
95_T512_F2.0331.00
100_S501_A2.0221.00
119_I201_M2.0071.00
460_K464_H1.9711.00
462_L465_A1.9361.00
443_F521_W1.9321.00
380_M395_I1.8931.00
107_P494_A1.8621.00
462_L523_F1.8601.00
317_G386_R1.8581.00
108_S112_G1.8501.00
245_T331_L1.8351.00
509_V513_L1.8291.00
462_L520_I1.8291.00
292_F296_E1.8231.00
92_L105_I1.8051.00
410_F425_Y1.7921.00
446_S521_W1.7781.00
527_T531_E1.7731.00
253_A338_F1.7691.00
466_H470_A1.7601.00
199_D268_R1.7551.00
466_H521_W1.7110.99
92_L113_L1.6750.99
286_Q422_D1.6530.99
527_T533_P1.6440.99
267_D272_T1.6370.99
385_L391_M1.6160.99
452_M552_D1.6160.99
250_I254_F1.6150.99
523_F527_T1.6150.99
416_I420_L1.6070.99
59_I63_F1.6040.99
78_Y161_P1.6040.99
86_G120_T1.5950.99
293_G296_E1.5870.99
311_I445_A1.5780.99
305_M369_S1.5770.99
428_G482_L1.5710.99
315_F390_P1.5680.99
466_H517_S1.5630.99
476_A506_L1.5560.99
253_A299_V1.5540.99
223_I240_S1.5380.99
301_V305_M1.5340.99
152_I214_M1.5280.99
456_R532_G1.5260.99
309_S376_W1.5250.99
394_C444_A1.5120.99
184_T289_F1.5080.99
307_I311_I1.4950.98
484_L503_A1.4930.98
231_V237_D1.4890.98
479_L483_W1.4870.98
393_F443_F1.4850.98
78_Y160_L1.4760.98
72_G132_A1.4690.98
457_M535_V1.4640.98
512_F516_V1.4540.98
124_L208_T1.4540.98
157_F161_P1.4520.98
396_G467_F1.4500.98
84_A522_L1.4400.98
473_G510_G1.4350.98
313_P320_L1.4350.98
447_Y463_A1.4350.98
469_T516_V1.4310.98
88_V92_L1.4310.98
179_A201_M1.4310.98
400_N475_N1.4260.98
443_F466_H1.4230.98
223_I236_L1.4210.98
456_R528_S1.4170.98
326_V330_T1.4150.98
220_I244_L1.4150.98
91_L511_A1.4120.98
227_R230_D1.4110.98
550_T558_A1.4090.98
557_R560_E1.4040.98
307_I449_W1.4030.98
523_F526_A1.4030.98
477_T511_A1.3980.98
98_A505_R1.3940.97
76_G132_A1.3890.97
95_T104_L1.3780.97
141_L240_S1.3750.97
266_L272_T1.3570.97
256_L291_F1.3550.97
224_F244_L1.3520.97
550_T554_A1.3500.97
96_E101_S1.3460.97
477_T514_I1.3430.97
137_F448_Y1.3370.97
167_I204_G1.3340.97
273_T276_T1.3320.97
263_M275_F1.3270.97
85_W120_T1.3270.97
181_T190_S1.3230.97
466_H518_T1.3230.97
300_L434_V1.3080.96
135_N218_N1.3060.96
187_T285_W1.3040.96
206_H262_I1.3000.96
551_N554_A1.2940.96
184_T421_H1.2910.96
532_G535_V1.2910.96
551_N555_W1.2870.96
502_T506_L1.2870.96
509_V512_F1.2830.96
432_F479_L1.2810.96
470_A517_S1.2800.96
245_T330_T1.2770.96
312_L380_M1.2770.96
93_M113_L1.2760.96
65_T70_D1.2670.96
185_M201_M1.2670.96
134_G243_M1.2660.96
441_A444_A1.2610.95
138_I240_S1.2570.95
466_H520_I1.2550.95
475_N479_L1.2540.95
333_I372_K1.2520.95
216_A251_L1.2510.95
185_M198_V1.2450.95
519_L523_F1.2420.95
392_L467_F1.2400.95
417_D426_V1.2390.95
138_I142_I1.2280.95
216_A247_S1.2250.95
260_A285_W1.2200.95
91_L515_G1.2180.95
85_W89_S1.2180.95
124_L164_A1.2140.94
246_Q299_V1.2000.94
466_H524_N1.1980.94
327_V330_T1.1850.94
362_S412_A1.1830.94
224_F248_G1.1760.93
137_F453_V1.1760.93
550_T559_K1.1740.93
539_D543_L1.1720.93
380_M385_L1.1700.93
483_W503_A1.1690.93
135_N153_N1.1690.93
481_M484_L1.1630.93
154_A158_W1.1610.93
389_A464_H1.1590.93
67_D70_D1.1580.93
199_D269_N1.1570.93
347_T418_L1.1420.92
230_D235_D1.1400.92
83_F90_V1.1390.92
187_T264_L1.1310.92
461_R464_H1.1280.92
326_V329_S1.1230.92
393_F447_Y1.1210.92
436_G474_S1.1170.92
315_F391_M1.1140.91
359_M414_I1.1120.91
465_A520_I1.1050.91
231_V236_L1.1030.91
62_W74_L1.1020.91
60_I64_T1.1000.91
463_A524_N1.0960.91
83_F86_G1.0950.91
298_Y303_P1.0920.91
522_L526_A1.0920.91
362_S411_L1.0840.90
411_L420_L1.0720.90
554_A559_K1.0630.89
78_Y82_A1.0620.89
130_I216_A1.0620.89
363_L412_A1.0610.89
311_I390_P1.0600.89
239_F243_M1.0570.89
552_D555_W1.0560.89
80_T84_A1.0530.89
290_W293_G1.0530.89
76_G453_V1.0470.89
245_T248_G1.0470.89
109_L113_L1.0460.89
116_S171_F1.0450.89
470_A514_I1.0290.88
181_T185_M1.0280.88
263_M274_F1.0280.88
526_A530_R1.0260.88
308_V397_F1.0230.87
428_G481_M1.0220.87
119_I285_W1.0210.87
62_W70_D1.0200.87
91_L508_T1.0180.87
133_F307_I1.0160.87
77_V81_I1.0160.87
424_Y489_M1.0150.87
206_H261_L1.0140.87
163_G204_G1.0120.87
58_G61_R1.0020.86
311_I394_C0.9970.86
131_A211_S0.9960.86
220_I251_L0.9960.86
372_K376_W0.9930.86
126_G300_L0.9910.86
96_E103_T0.9900.86
228_G562_T0.9890.86
65_T154_A0.9860.85
305_M376_W0.9860.85
219_F223_I0.9840.85
187_T190_S0.9800.85
156_A214_M0.9780.85
99_T102_E0.9750.85
73_I453_V0.9740.85
505_R509_V0.9700.85
311_I441_A0.9690.84
83_F125_F0.9650.84
308_V312_L0.9650.84
309_S372_K0.9630.84
79_G129_M0.9600.84
539_D542_D0.9580.84
490_P493_Y0.9550.84
120_T168_W0.9520.83
392_L464_H0.9520.83
96_E495_T0.9510.83
155_I159_L0.9510.83
301_V437_A0.9480.83
171_F174_P0.9470.83
313_P319_K0.9420.83
348_T422_D0.9410.83
489_M504_H0.9400.83
266_L270_F0.9390.83
218_N222_T0.9390.83
480_A503_A0.9380.82
120_T164_A0.9360.82
233_W244_L0.9330.82
74_L157_F0.9330.82
84_A88_V0.9330.82
315_F541_W0.9200.81
80_T522_L0.9160.81
446_S525_M0.9130.81
380_M383_G0.9130.81
134_G219_F0.9120.81
301_V438_I0.9110.81
212_A250_I0.9100.81
190_S264_L0.9060.80
138_I243_M0.9050.80
220_I248_G0.9040.80
404_G433_I0.9030.80
389_A392_L0.9020.80
234_P328_Y0.9020.80
59_I74_L0.8990.80
126_G438_I0.8960.79
470_A518_T0.8950.79
123_F292_F0.8900.79
169_S200_M0.8900.79
97_L424_Y0.8890.79
235_D565_L0.8890.79
529_W532_G0.8850.79
90_V436_G0.8850.79
387_L391_M0.8850.79
409_V412_A0.8830.78
170_G179_A0.8820.78
209_G258_G0.8800.78
126_G434_V0.8790.78
305_M372_K0.8760.78
550_T555_W0.8750.78
126_G439_G0.8750.78
142_I240_S0.8730.78
185_M190_S0.8710.78
238_I326_V0.8690.77
460_K463_A0.8650.77
443_F518_T0.8650.77
296_E300_L0.8630.77
71_I153_N0.8630.77
432_F482_L0.8590.77
78_Y164_A0.8570.76
407_T482_L0.8520.76
469_T513_L0.8520.76
163_G208_T0.8520.76
308_V441_A0.8500.76
229_E562_T0.8490.76
315_F388_T0.8480.76
520_I523_F0.8470.76
472_V519_L0.8470.76
367_I371_V0.8450.75
443_F470_A0.8430.75
179_A185_M0.8430.75
317_G542_D0.8430.75
295_P298_Y0.8380.75
337_S422_D0.8350.75
335_V339_G0.8340.74
450_F529_W0.8340.74
320_L323_F0.8330.74
390_P458_Y0.8320.74
366_S372_K0.8310.74
236_L240_S0.8290.74
308_V394_C0.8280.74
538_T551_N0.8260.74
319_K324_K0.8250.74
281_D492_R0.8230.73
125_F129_M0.8210.73
180_Q193_M0.8180.73
369_S372_K0.8180.73
85_W168_W0.8170.73
206_H258_G0.8160.73
159_L207_L0.8150.73
130_I243_M0.8140.73
261_L265_L0.8100.72
535_V552_D0.8090.72
451_P457_M0.8070.72
456_R529_W0.8070.72
92_L104_L0.8060.72
329_S332_A0.8020.71
204_G262_I0.8020.71
473_G517_S0.8000.71
254_F258_G0.7980.71
515_G519_L0.7960.71
97_L504_H0.7960.71
388_T464_H0.7940.71
227_R235_D0.7930.71
179_A285_W0.7930.71
399_Q403_I0.7930.71
110_Y114_L0.7920.71
202_M265_L0.7910.70
127_T293_G0.7900.70
292_F300_L0.7870.70
265_L269_N0.7850.70
434_V438_I0.7830.70
406_V409_V0.7820.70
119_I167_I0.7820.70
93_M118_G0.7810.69
396_G440_F0.7810.69
70_D74_L0.7790.69
238_I490_P0.7790.69
179_A198_V0.7750.69
252_F338_F0.7750.69
193_M196_P0.7740.69
305_M370_A0.7730.69
450_F458_Y0.7730.69
458_Y463_A0.7720.69
131_A250_I0.7720.69
215_G260_A0.7710.68
342_A350_I0.7700.68
443_F447_Y0.7700.68
151_R155_I0.7680.68
286_Q348_T0.7680.68
459_Q523_F0.7680.68
62_W65_T0.7680.68
87_G90_V0.7680.68
524_N528_S0.7670.68
438_I442_L0.7670.68
392_L468_W0.7650.68
160_L211_S0.7610.67
283_I348_T0.7600.67
166_L200_M0.7570.67
549_F560_E0.7530.67
386_R542_D0.7530.67
287_H482_L0.7490.66
227_R231_V0.7480.66
390_P448_Y0.7480.66
372_K375_N0.7480.66
87_G518_T0.7470.66
165_I169_S0.7450.66
95_T508_T0.7410.65
426_V430_F0.7400.65
428_G480_A0.7400.65
402_I406_V0.7370.65
410_F416_I0.7350.65
293_G300_L0.7350.65
103_T495_T0.7320.64
129_M155_I0.7320.64
106_S109_L0.7310.64
326_V371_V0.7290.64
376_W397_F0.7290.64
242_T302_L0.7290.64
132_A454_T0.7230.63
326_V375_N0.7200.63
393_F467_F0.7200.63
456_R531_E0.7190.63
450_F454_T0.7190.63
234_P323_F0.7170.63
424_Y504_H0.7170.63
84_A518_T0.7170.63
155_I214_M0.7170.63
86_G122_L0.7160.63
297_V303_P0.7150.63
249_L362_S0.7140.63
237_D240_S0.7120.62
136_Y453_V0.7100.62
137_F141_L0.7060.62
507_A510_G0.7050.62
295_P303_P0.7040.61
63_F564_V0.7030.61
93_M114_L0.7010.61
351_D355_R0.7010.61
205_L208_T0.7010.61
520_I524_N0.7000.61
206_H265_L0.7000.61
213_T258_G0.7000.61
94_R97_L0.6990.61
122_L300_L0.6990.61
459_Q528_S0.6990.61
66_V154_A0.6980.61
147_M219_F0.6970.61
143_D455_G0.6960.61
248_G262_I0.6950.60
508_T512_F0.6940.60
355_R418_L0.6930.60
125_F243_M0.6920.60
373_V398_V0.6910.60
536_D552_D0.6900.60
104_L109_L0.6900.60
108_S180_Q0.6900.60
58_G63_F0.6900.60
131_A282_P0.6880.60
550_T560_E0.6880.60
389_A393_F0.6880.60
366_S374_F0.6880.60
447_Y524_N0.6860.59
533_P536_D0.6850.59
242_T320_L0.6840.59
116_S179_A0.6840.59
493_Y504_H0.6830.59
506_L510_G0.6830.59
535_V538_T0.6830.59
434_V437_A0.6810.59
283_I422_D0.6810.59
298_Y405_G0.6800.59
474_S514_I0.6800.59
95_T251_L0.6800.59
118_G430_F0.6790.59
454_T457_M0.6790.59
254_F296_E0.6780.59
470_A526_A0.6780.59
287_H345_M0.6780.59
248_G334_G0.6760.58
162_P165_I0.6750.58
81_I165_I0.6720.58
135_N146_D0.6720.58
476_A509_V0.6710.58
457_M536_D0.6710.58
127_T292_F0.6690.58
90_V435_Y0.6690.58
228_G231_V0.6670.57
460_K465_A0.6660.57
301_V376_W0.6650.57
105_I109_L0.6650.57
457_M528_S0.6630.57
321_F379_T0.6630.57
305_M333_I0.6600.57
182_S492_R0.6600.57
517_S545_E0.6580.56
88_V210_V0.6570.56
346_F414_I0.6570.56
476_A513_L0.6560.56
551_N559_K0.6560.56
156_A219_F0.6550.56
216_A253_A0.6540.56
248_G332_A0.6500.55
230_D463_A0.6500.55
253_A412_A0.6480.55
294_H343_H0.6470.55
102_E107_P0.6470.55
538_T550_T0.6460.55
258_G262_I0.6450.55
440_F467_F0.6410.54
267_D273_T0.6410.54
406_V436_G0.6410.54
79_G125_F0.6410.54
450_F456_R0.6410.54
203_L262_I0.6410.54
305_M329_S0.6400.54
332_A554_A0.6400.54
124_L163_G0.6380.54
357_S361_V0.6370.54
88_V165_I0.6360.54
400_N471_L0.6350.54
336_L368_P0.6340.54
143_D230_D0.6320.53
287_H422_D0.6310.53
454_T528_S0.6300.53
93_M300_L0.6290.53
125_F394_C0.6280.53
489_M496_Y0.6280.53
551_N560_E0.6270.53
234_P320_L0.6270.53
68_H140_L0.6260.53
359_M413_V0.6250.52
61_R65_T0.6250.52
130_I442_L0.6250.52
349_G401_F0.6240.52
324_K328_Y0.6240.52
153_N222_T0.6220.52
149_F221_A0.6220.52
208_T211_S0.6200.52
397_F433_I0.6190.52
219_F243_M0.6190.52
301_V433_I0.6180.52
309_S366_S0.6180.52
126_G442_L0.6180.52
120_T167_I0.6180.52
300_L438_I0.6170.52
262_I265_L0.6170.52
188_P491_R0.6150.51
504_H508_T0.6150.51
390_P444_A0.6140.51
63_F410_F0.6140.51
84_A393_F0.6130.51
87_G515_G0.6120.51
465_A523_F0.6120.51
439_G453_V0.6090.51
87_G91_L0.6090.51
99_T501_A0.6080.51
68_H342_A0.6080.51
312_L394_C0.6080.51
313_P540_P0.6070.50
391_M394_C0.6070.50
68_H72_G0.6060.50
92_L472_V0.6060.50
110_Y288_L0.6060.50
127_T296_E0.6050.50
89_S92_L0.6030.50
432_F437_A0.6030.50
147_M365_I0.6020.50
127_T250_I0.6020.50
472_V513_L0.6000.50
538_T541_W0.5990.49
281_D438_I0.5990.49
144_A229_E0.5990.49
559_K562_T0.5990.49
248_G331_L0.5980.49
60_I65_T0.5970.49
210_V214_M0.5970.49
531_E534_R0.5970.49
560_E564_V0.5960.49
209_G372_K0.5950.49
181_T193_M0.5950.49
301_V372_K0.5930.49
555_W560_E0.5900.48
91_L519_L0.5890.48
321_F333_I0.5890.48
202_M285_W0.5890.48
147_M215_G0.5880.48
204_G208_T0.5870.48
333_I376_W0.5840.48
211_S281_D0.5840.48
314_K541_W0.5840.48
402_I437_A0.5830.48
316_S383_G0.5830.48
71_I74_L0.5820.48
345_M422_D0.5810.47
415_P420_L0.5810.47
328_Y332_A0.5810.47
242_T325_F0.5810.47
115_T119_I0.5800.47
540_P543_L0.5800.47
452_M548_Q0.5790.47
217_I221_A0.5790.47
387_L395_I0.5790.47
131_A135_N0.5780.47
153_N209_G0.5780.47
134_G247_S0.5770.47
151_R281_D0.5770.47
484_L489_M0.5760.47
341_W358_F0.5760.47
122_L127_T0.5750.47
301_V304_P0.5750.47
267_D365_I0.5750.47
260_A307_I0.5740.47
346_F359_M0.5740.47
550_T556_F0.5740.47
132_A208_T0.5730.46
316_S385_L0.5710.46
256_L260_A0.5700.46
174_P194_S0.5700.46
457_M533_P0.5680.46
153_N218_N0.5680.46
260_A289_F0.5660.46
559_K563_T0.5650.46
113_L194_S0.5640.45
373_V402_I0.5640.45
108_S197_A0.5640.45
103_T494_A0.5620.45
250_I293_G0.5620.45
75_Y135_N0.5620.45
325_F421_H0.5580.45
459_Q465_A0.5580.45
546_T549_F0.5580.45
219_F247_S0.5580.45
527_T530_R0.5560.45
227_R233_W0.5550.44
245_T327_V0.5550.44
526_A531_E0.5540.44
81_I85_W0.5540.44
315_F558_A0.5540.44
355_R439_G0.5530.44
321_F375_N0.5530.44
305_M309_S0.5520.44
415_P434_V0.5510.44
89_S168_W0.5510.44
139_P222_T0.5500.44
369_S373_V0.5500.44
325_F329_S0.5500.44
123_F433_I0.5500.44
314_K545_E0.5500.44
211_S261_L0.5500.44
228_G235_D0.5500.44
493_Y496_Y0.5500.44
148_A222_T0.5480.44
388_T460_K0.5470.43
366_S376_W0.5470.43
161_P165_I0.5460.43
465_A505_R0.5460.43
254_F327_V0.5460.43
540_P552_D0.5450.43
509_V519_L0.5450.43
554_A563_T0.5450.43
536_D540_P0.5440.43
301_V434_V0.5440.43
247_S299_V0.5440.43
146_D153_N0.5430.43
532_G536_D0.5430.43
359_M507_A0.5430.43
249_L300_L0.5430.43
111_N424_Y0.5410.43
332_A335_V0.5400.43
225_T428_G0.5400.43
98_A196_P0.5400.43
353_R357_S0.5400.43
315_F387_L0.5390.43
68_H148_A0.5370.42
235_D558_A0.5370.42
82_A86_G0.5370.42
535_V540_P0.5360.42
221_A251_L0.5360.42
549_F555_W0.5350.42
483_W487_G0.5340.42
117_H431_H0.5340.42
547_D553_W0.5340.42
366_S369_S0.5340.42
442_L446_S0.5340.42
206_H209_G0.5340.42
229_E323_F0.5340.42
371_V459_Q0.5330.42
457_M540_P0.5330.42
388_T448_Y0.5320.42
187_T417_D0.5320.42
270_F384_K0.5320.42
238_I421_H0.5310.42
188_P282_P0.5300.42
304_P308_V0.5300.42
195_S549_F0.5290.41
178_T197_A0.5290.41
84_A519_L0.5280.41
147_M160_L0.5280.41
534_R551_N0.5280.41
529_W533_P0.5260.41
516_V520_I0.5260.41
546_T565_L0.5260.41
144_A226_E0.5260.41
116_S201_M0.5250.41
295_P340_V0.5240.41
254_F263_M0.5240.41
119_I181_T0.5240.41
88_V278_A0.5230.41
73_I77_V0.5230.41
106_S517_S0.5230.41
64_T85_W0.5220.41
170_G201_M0.5220.41
208_T212_A0.5210.41
541_W552_D0.5210.41
321_F372_K0.5200.40
393_F521_W0.5180.40
527_T532_G0.5160.40
347_T440_F0.5160.40
61_R556_F0.5160.40
169_S465_A0.5150.40
548_Q555_W0.5140.40
383_G541_W0.5140.40
398_V479_L0.5140.40
519_L526_A0.5130.40
451_P454_T0.5130.40
260_A284_F0.5130.40
337_S365_I0.5120.40
458_Y532_G0.5120.40
457_M532_G0.5120.40
464_H467_F0.5110.39
187_T212_A0.5100.39
562_T565_L0.5090.39
373_V433_I0.5090.39
456_R534_R0.5080.39
118_G122_L0.5080.39
289_F297_V0.5070.39
469_T505_R0.5070.39
250_I299_V0.5070.39
546_T563_T0.5070.39
435_Y514_I0.5060.39
523_F534_R0.5060.39
236_L323_F0.5050.39
231_V543_L0.5040.39
217_I421_H0.5040.39
467_F471_L0.5040.39
119_I164_A0.5040.39
84_A511_A0.5030.39
232_G555_W0.5030.39
152_I217_I0.5020.38
232_G323_F0.5020.38
452_M541_W0.5020.38
143_D546_T0.5010.38
336_L339_G0.5010.38
394_C398_V0.5000.38
203_L207_L0.5000.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1fftA 1 0.8297 100 0.173 Contact Map
2yevA 1 0.8938 100 0.183 Contact Map
2gsmA 1 0.8432 100 0.196 Contact Map
1v54A 1 0.8583 100 0.219 Contact Map
3s8fA 1 0.8634 100 0.338 Contact Map
3ayfA 2 0.8381 100 0.378 Contact Map
3mk7A 1 0.7403 100 0.406 Contact Map
3wfdB 1 0.7083 100 0.422 Contact Map
4c7rA 3 0.0995 29.4 0.983 Contact Map
4djkA 2 0.0658 29.4 0.983 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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