RS19 - HALSA - GREMLIN Contacts

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RS19 - 30S ribosomal protein S19

UniProt:	P15010	Sequences: MSTEYRTGREGEFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANNPIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	140 (133)
Sequences:	397 (212)
Seq/√Len:	18.4

HALSA - RS19
SULSO - RS19

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
85_V	107_I	5.422	1.00
31_V	35_L	4.675	1.00
59_R	83_E	4.342	1.00
18_H	26_M	3.779	1.00
112_G	117_T	2.352	0.95
54_V	111_L	2.327	0.95
15_Y	36_P	2.246	0.94
125_Q	128_I	2.069	0.90
43_I	81_L	2.053	0.90
35_L	39_Q	2.017	0.89
94_G	123_H	2.003	0.89
39_Q	110_Y	1.950	0.88
29_E	32_A	1.852	0.85
133_S	137_V	1.847	0.84
45_R	76_R	1.759	0.81
129_G	138_P	1.715	0.80
78_M	89_F	1.633	0.76
21_D	24_Q	1.623	0.76
9_R	12_E	1.605	0.75
109_H	112_G	1.572	0.73
134_S	140_K	1.562	0.73
124_G	137_V	1.532	0.71
102_V	111_L	1.521	0.71
51_H	77_D	1.492	0.69
19_D	22_E	1.485	0.69
132_R	135_K	1.477	0.68
88_T	99_R	1.465	0.68
36_P	39_Q	1.445	0.67
132_R	137_V	1.442	0.66
58_A	103_Q	1.423	0.65
70_P	90_A	1.423	0.65
32_A	92_Y	1.405	0.64
118_R	129_G	1.404	0.64
39_Q	79_P	1.394	0.64
37_A	48_S	1.345	0.61
31_V	119_S	1.335	0.60
129_G	133_S	1.308	0.59
131_T	134_S	1.300	0.58
11_G	16_R	1.298	0.58
91_V	115_Q	1.280	0.57
76_R	94_G	1.265	0.56
43_I	51_H	1.252	0.55
110_Y	116_L	1.212	0.53
47_L	78_M	1.201	0.52
12_E	118_R	1.199	0.52
38_R	114_F	1.193	0.52
109_H	114_F	1.192	0.52
46_G	84_F	1.178	0.51
64_E	89_F	1.166	0.50
47_L	111_L	1.154	0.49
110_Y	113_E	1.139	0.48
10_E	118_R	1.131	0.48
17_G	113_E	1.108	0.46
130_A	134_S	1.097	0.46
55_L	83_E	1.075	0.44
114_F	131_T	1.056	0.43
89_F	102_V	1.055	0.43
26_M	36_P	1.046	0.43
10_E	138_P	1.030	0.42
17_G	106_M	1.026	0.41
84_F	137_V	1.001	0.40
76_R	123_H	0.988	0.39
131_T	136_F	0.978	0.38
55_L	59_R	0.976	0.38
58_A	75_L	0.975	0.38
44_T	51_H	0.974	0.38
28_L	36_P	0.966	0.38
38_R	113_E	0.960	0.37
40_R	113_E	0.956	0.37
31_V	34_L	0.953	0.37
66_T	71_I	0.953	0.37
101_E	118_R	0.948	0.37
13_F	54_V	0.942	0.36
40_R	92_Y	0.939	0.36
118_R	125_Q	0.934	0.36
37_A	43_I	0.932	0.36
42_T	51_H	0.929	0.36
43_I	72_R	0.927	0.36
72_R	119_S	0.921	0.35
103_Q	107_I	0.919	0.35
90_A	99_R	0.915	0.35
27_S	30_D	0.909	0.35
85_V	102_V	0.902	0.34
55_L	78_M	0.901	0.34
34_L	39_Q	0.901	0.34
129_G	139_L	0.895	0.34
69_N	103_Q	0.879	0.33
41_R	45_R	0.878	0.33
62_G	87_L	0.877	0.33
41_R	76_R	0.850	0.31
128_I	134_S	0.848	0.31
17_G	108_G	0.847	0.31
50_E	68_N	0.840	0.31
31_V	89_F	0.831	0.30
68_N	90_A	0.821	0.30
31_V	110_Y	0.808	0.29
16_R	76_R	0.803	0.29
70_P	122_E	0.803	0.29
26_M	30_D	0.800	0.29
22_E	27_S	0.800	0.29
111_L	119_S	0.797	0.29
60_E	64_E	0.793	0.28
11_G	42_T	0.793	0.28
70_P	77_D	0.782	0.28
26_M	107_I	0.779	0.28
75_L	83_E	0.779	0.28
38_R	41_R	0.778	0.28
79_P	120_S	0.775	0.27
56_A	89_F	0.772	0.27
44_T	55_L	0.770	0.27
89_F	100_V	0.770	0.27
69_N	72_R	0.769	0.27
10_E	125_Q	0.764	0.27
72_R	79_P	0.762	0.27
93_T	115_Q	0.756	0.26
130_A	140_K	0.748	0.26
95_Q	115_Q	0.738	0.26
8_G	41_R	0.735	0.25
88_T	100_V	0.729	0.25
29_E	55_L	0.724	0.25
29_E	69_N	0.720	0.25
44_T	80_V	0.718	0.25
91_V	111_L	0.715	0.25
84_F	113_E	0.712	0.24
86_G	101_E	0.712	0.24
70_P	99_R	0.707	0.24
29_E	39_Q	0.704	0.24
58_A	120_S	0.703	0.24
130_A	133_S	0.695	0.24
50_E	62_G	0.694	0.24
75_L	121_V	0.690	0.23
35_L	52_H	0.685	0.23
15_Y	40_R	0.681	0.23
11_G	126_A	0.680	0.23
30_D	90_A	0.678	0.23
71_I	96_E	0.678	0.23
123_H	127_G	0.674	0.23
66_T	101_E	0.665	0.22
60_E	78_M	0.663	0.22
71_I	115_Q	0.662	0.22
96_E	99_R	0.660	0.22
136_F	139_L	0.655	0.22
91_V	97_F	0.652	0.22
118_R	135_K	0.650	0.22
92_Y	115_Q	0.645	0.21
23_L	48_S	0.643	0.21
37_A	75_L	0.639	0.21
26_M	105_E	0.635	0.21
135_K	139_L	0.634	0.21
31_V	36_P	0.629	0.21
69_N	91_V	0.628	0.21
75_L	126_A	0.627	0.21
25_E	33_E	0.626	0.21
21_D	54_V	0.624	0.21
89_F	115_Q	0.618	0.20
60_E	131_T	0.614	0.20
23_L	107_I	0.614	0.20
12_E	125_Q	0.613	0.20
46_G	69_N	0.609	0.20
41_R	108_G	0.607	0.20
38_R	110_Y	0.606	0.20
80_V	100_V	0.606	0.20
33_E	53_K	0.603	0.20
58_A	61_S	0.602	0.20
10_E	18_H	0.594	0.19
71_I	88_T	0.593	0.19
125_Q	129_G	0.587	0.19
113_E	121_V	0.578	0.19
46_G	97_F	0.578	0.19
67_A	71_I	0.577	0.19
80_V	89_F	0.577	0.19
48_S	92_Y	0.577	0.19
32_A	44_T	0.576	0.19
70_P	100_V	0.575	0.19
111_L	116_L	0.567	0.18
10_E	62_G	0.565	0.18
95_Q	121_V	0.561	0.18
50_E	55_L	0.561	0.18
28_L	80_V	0.556	0.18
21_D	57_E	0.552	0.18
66_T	69_N	0.552	0.18
94_G	108_G	0.552	0.18
17_G	84_F	0.549	0.18
16_R	85_V	0.547	0.18
12_E	137_V	0.538	0.17
92_Y	118_R	0.537	0.17
124_G	127_G	0.535	0.17
59_R	91_V	0.528	0.17
110_Y	117_T	0.525	0.17
101_E	114_F	0.525	0.17
22_E	85_V	0.523	0.17
75_L	110_Y	0.523	0.17
64_E	81_L	0.518	0.17
20_L	23_L	0.517	0.17
8_G	85_V	0.516	0.17
52_H	88_T	0.507	0.16
125_Q	137_V	0.507	0.16
49_E	53_K	0.506	0.16
21_D	79_P	0.502	0.16
24_Q	34_L	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4w23P	1	0.65	100	0.14	Contact Map
3j38P	1	0.8571	100	0.145	Contact Map
3zeyI	1	0.9286	100	0.161	Contact Map
3j7aX	1	0.6643	100	0.164	Contact Map
4ujpQ	1	0.8643	100	0.211	Contact Map
3j20T	1	0.7929	100	0.218	Contact Map
4bpeS	1	0.8286	100	0.229	Contact Map
3bbnS	1	0.6571	100	0.562	Contact Map
4kiyS	1	0.5643	100	0.575	Contact Map
3a1pB	1	0.6	100	0.579	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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