RS3 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

RS3 - 30S ribosomal protein S3

UniProt:	P15009	Sequences: MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDVQEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKIIPPNAELPDDFEIQEDADIEDLVVDEAEAGEDLEELLEGEDADAEDADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAADTAEDLLDEMDDEDGGAE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	302 (237)
Sequences:	436 (287)
Seq/√Len:	18.7

ECOLI - RS3
HALSA - RS3
SULSO - RS3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
31_G	91_N	7.282	1.00
90_L	125_A	5.957	1.00
12_L	16_Q	4.915	1.00
95_V	182_I	3.350	1.00
92_A	163_D	3.216	0.99
89_D	95_V	2.833	0.99
204_L	207_D	2.806	0.98
205_V	208_E	2.765	0.98
183_I	186_N	2.727	0.98
29_G	85_V	2.717	0.98
224_A	227_E	2.651	0.98
100_A	178_V	2.475	0.96
236_E	239_S	2.324	0.95
108_Y	116_T	2.195	0.93
207_D	213_E	2.068	0.91
170_V	175_T	1.955	0.88
227_E	231_A	1.949	0.88
25_L	30_Y	1.849	0.85
132_L	143_V	1.831	0.84
232_D	237_P	1.795	0.83
213_E	217_E	1.790	0.83
86_E	94_I	1.773	0.82
236_E	241_P	1.755	0.82
89_D	156_E	1.715	0.80
222_E	227_E	1.702	0.80
54_V	69_L	1.672	0.78
189_L	193_F	1.667	0.78
225_D	228_D	1.662	0.78
238_E	242_A	1.642	0.77
211_A	230_D	1.626	0.76
189_L	192_D	1.603	0.75
21_F	108_Y	1.591	0.75
23_E	238_E	1.572	0.74
214_D	219_L	1.564	0.73
217_E	228_D	1.558	0.73
186_N	199_A	1.556	0.73
221_G	229_A	1.555	0.73
60_K	82_V	1.552	0.73
213_E	222_E	1.533	0.72
66_T	80_I	1.532	0.72
202_E	205_V	1.521	0.71
227_E	230_D	1.496	0.70
190_P	193_F	1.472	0.69
211_A	215_L	1.468	0.69
19_E	44_I	1.435	0.67
70_E	95_V	1.412	0.65
133_S	143_V	1.396	0.65
226_A	231_A	1.382	0.64
192_D	196_Q	1.376	0.63
237_P	242_A	1.365	0.63
226_A	234_A	1.354	0.62
79_Q	85_V	1.351	0.62
115_T	119_R	1.346	0.62
203_D	206_V	1.336	0.61
6_E	191_D	1.335	0.61
212_G	215_L	1.326	0.60
214_D	217_E	1.324	0.60
29_G	57_K	1.320	0.60
70_E	79_Q	1.319	0.60
58_G	119_R	1.305	0.59
227_E	232_D	1.303	0.59
233_A	236_E	1.285	0.58
130_I	176_I	1.275	0.57
8_I	46_L	1.259	0.56
74_D	117_I	1.244	0.55
113_G	165_G	1.220	0.54
231_A	235_A	1.220	0.54
206_V	209_A	1.216	0.54
31_G	73_F	1.215	0.54
147_N	184_P	1.210	0.53
105_R	167_G	1.207	0.53
117_I	130_I	1.199	0.53
220_E	228_D	1.199	0.53
232_D	242_A	1.196	0.52
37_P	179_N	1.186	0.52
130_I	205_V	1.180	0.51
217_E	222_E	1.176	0.51
23_E	130_I	1.171	0.51
22_A	93_Q	1.171	0.51
161_I	191_D	1.170	0.51
202_E	213_E	1.157	0.50
219_L	227_E	1.155	0.50
20_F	90_L	1.144	0.49
215_L	223_D	1.143	0.49
235_A	242_A	1.141	0.49
9_E	125_A	1.137	0.49
222_E	229_A	1.130	0.48
218_L	222_E	1.127	0.48
220_E	223_D	1.124	0.48
208_E	222_E	1.121	0.48
240_E	243_D	1.119	0.48
101_N	178_V	1.111	0.47
93_Q	166_K	1.111	0.47
37_P	136_V	1.105	0.47
37_P	169_A	1.101	0.46
221_G	224_A	1.095	0.46
208_E	239_S	1.093	0.46
29_G	70_E	1.087	0.46
211_A	227_E	1.084	0.45
35_L	74_D	1.077	0.45
199_A	206_V	1.076	0.45
235_A	240_E	1.071	0.45
129_E	153_H	1.070	0.45
137_T	169_A	1.068	0.44
206_V	243_D	1.067	0.44
230_D	234_A	1.063	0.44
61_N	64_K	1.061	0.44
239_S	243_D	1.060	0.44
233_A	237_P	1.059	0.44
32_G	91_N	1.055	0.44
230_D	237_P	1.053	0.43
26_A	141_G	1.052	0.43
208_E	214_D	1.050	0.43
5_L	188_E	1.049	0.43
219_L	232_D	1.049	0.43
108_Y	137_T	1.041	0.43
233_A	238_E	1.036	0.42
50_K	119_R	1.035	0.42
223_D	226_A	1.034	0.42
33_M	156_E	1.031	0.42
236_E	240_E	1.024	0.42
82_V	88_P	1.014	0.41
153_H	157_P	1.011	0.41
42_M	145_K	1.006	0.41
39_P	80_I	0.994	0.40
224_A	232_D	0.993	0.40
223_D	228_D	0.990	0.40
17_I	65_I	0.990	0.40
81_D	144_E	0.983	0.39
210_E	237_P	0.979	0.39
220_E	232_D	0.975	0.39
212_G	219_L	0.974	0.39
219_L	222_E	0.973	0.39
225_D	229_A	0.972	0.39
210_E	213_E	0.972	0.39
42_M	137_T	0.965	0.38
226_A	229_A	0.964	0.38
136_V	171_M	0.963	0.38
153_H	181_K	0.963	0.38
219_L	240_E	0.962	0.38
17_I	103_L	0.954	0.38
237_P	241_P	0.953	0.37
159_E	185_P	0.948	0.37
191_D	195_I	0.946	0.37
217_E	227_E	0.945	0.37
141_G	165_G	0.937	0.37
13_Q	171_M	0.925	0.36
90_L	232_D	0.922	0.36
142_R	178_V	0.921	0.36
220_E	231_A	0.916	0.35
104_E	123_S	0.908	0.35
65_I	83_Q	0.903	0.35
216_E	221_G	0.901	0.34
67_T	71_E	0.900	0.34
217_E	226_A	0.899	0.34
24_E	68_Q	0.897	0.34
190_P	196_Q	0.888	0.34
228_D	234_A	0.887	0.34
28_A	144_E	0.886	0.34
211_A	229_A	0.877	0.33
5_L	192_D	0.875	0.33
212_G	217_E	0.865	0.32
202_E	206_V	0.862	0.32
208_E	211_A	0.861	0.32
229_A	234_A	0.858	0.32
102_A	150_Y	0.857	0.32
73_F	79_Q	0.855	0.32
223_D	232_D	0.855	0.32
37_P	171_M	0.853	0.32
226_A	230_D	0.848	0.32
212_G	227_E	0.847	0.31
22_A	182_I	0.846	0.31
44_I	66_T	0.844	0.31
20_F	24_E	0.841	0.31
216_E	235_A	0.836	0.31
55_I	84_E	0.832	0.31
213_E	216_E	0.831	0.31
6_E	9_E	0.829	0.31
108_Y	130_I	0.829	0.31
218_L	227_E	0.818	0.30
238_E	241_P	0.815	0.30
29_G	111_K	0.811	0.30
216_E	225_D	0.810	0.30
55_I	165_G	0.809	0.29
53_M	79_Q	0.808	0.29
112_A	144_E	0.805	0.29
200_D	237_P	0.803	0.29
31_G	79_Q	0.798	0.29
228_D	232_D	0.797	0.29
215_L	221_G	0.795	0.29
5_L	191_D	0.792	0.29
99_L	116_T	0.782	0.28
215_L	219_L	0.782	0.28
226_A	239_S	0.777	0.28
85_V	107_W	0.776	0.28
235_A	239_S	0.775	0.28
37_P	157_P	0.772	0.28
161_I	196_Q	0.772	0.28
122_E	147_N	0.769	0.27
58_G	65_I	0.769	0.27
215_L	238_E	0.765	0.27
201_I	204_L	0.765	0.27
206_V	226_A	0.765	0.27
222_E	228_D	0.764	0.27
126_L	182_I	0.763	0.27
52_G	84_E	0.761	0.27
108_Y	111_K	0.757	0.27
29_G	79_Q	0.755	0.27
217_E	233_A	0.752	0.27
55_I	59_G	0.751	0.27
203_D	210_E	0.749	0.26
129_E	145_K	0.747	0.26
29_G	97_D	0.747	0.26
125_A	190_P	0.745	0.26
90_L	124_G	0.745	0.26
239_S	242_A	0.739	0.26
117_I	128_A	0.735	0.26
85_V	101_N	0.732	0.26
222_E	232_D	0.731	0.26
221_G	225_D	0.727	0.25
60_K	97_D	0.726	0.25
131_V	137_T	0.726	0.25
46_L	116_T	0.725	0.25
14_R	181_K	0.724	0.25
30_Y	99_L	0.723	0.25
92_A	169_A	0.720	0.25
216_E	226_A	0.719	0.25
223_D	229_A	0.719	0.25
223_D	227_E	0.716	0.25
48_A	103_L	0.716	0.25
57_K	111_K	0.715	0.25
193_F	196_Q	0.715	0.25
37_P	142_R	0.713	0.25
123_S	190_P	0.708	0.24
62_I	105_R	0.703	0.24
222_E	230_D	0.699	0.24
23_E	241_P	0.692	0.24
228_D	237_P	0.690	0.24
53_M	81_D	0.688	0.24
233_A	242_A	0.687	0.24
218_L	230_D	0.685	0.23
5_L	8_I	0.683	0.23
212_G	240_E	0.678	0.23
102_A	183_I	0.675	0.23
207_D	229_A	0.673	0.23
212_G	226_A	0.670	0.23
33_M	225_D	0.669	0.23
27_R	80_I	0.666	0.23
123_S	222_E	0.665	0.23
211_A	223_D	0.662	0.22
150_Y	183_I	0.662	0.22
63_R	89_D	0.661	0.22
209_A	212_G	0.661	0.22
62_I	104_E	0.658	0.22
211_A	236_E	0.657	0.22
221_G	226_A	0.654	0.22
4_E	125_A	0.653	0.22
138_G	164_H	0.652	0.22
107_W	113_G	0.651	0.22
45_V	83_Q	0.651	0.22
73_F	146_F	0.647	0.22
218_L	224_A	0.646	0.22
107_W	111_K	0.646	0.22
44_I	62_I	0.643	0.22
207_D	216_E	0.640	0.21
225_D	235_A	0.640	0.21
113_G	132_L	0.639	0.21
40_M	80_I	0.635	0.21
213_E	226_A	0.629	0.21
211_A	231_A	0.629	0.21
30_Y	48_A	0.628	0.21
106_G	158_A	0.627	0.21
124_G	215_L	0.627	0.21
31_G	85_V	0.626	0.21
106_G	140_R	0.626	0.21
202_E	228_D	0.624	0.21
62_I	130_I	0.622	0.21
189_L	200_D	0.621	0.21
103_L	122_E	0.619	0.21
210_E	236_E	0.619	0.21
224_A	230_D	0.618	0.21
12_L	105_R	0.617	0.21
152_K	185_P	0.615	0.20
194_E	199_A	0.614	0.20
190_P	194_E	0.612	0.20
38_T	145_K	0.612	0.20
5_L	186_N	0.611	0.20
195_I	200_D	0.610	0.20
220_E	224_A	0.610	0.20
221_G	236_E	0.609	0.20
26_A	175_T	0.609	0.20
161_I	186_N	0.608	0.20
68_Q	72_R	0.604	0.20
230_D	243_D	0.603	0.20
125_A	192_D	0.600	0.20
90_L	130_I	0.599	0.20
187_A	196_Q	0.599	0.20
234_A	237_P	0.596	0.20
11_G	141_G	0.596	0.20
110_R	144_E	0.595	0.20
30_Y	129_E	0.594	0.20
161_I	189_L	0.593	0.20
130_I	170_V	0.592	0.20
214_D	218_L	0.591	0.19
99_L	105_R	0.588	0.19
117_I	148_R	0.586	0.19
6_E	188_E	0.582	0.19
29_G	145_K	0.579	0.19
234_A	240_E	0.574	0.19
110_R	145_K	0.574	0.19
38_T	45_V	0.574	0.19
57_K	88_P	0.570	0.19
196_Q	199_A	0.567	0.19
203_D	228_D	0.567	0.19
39_P	45_V	0.567	0.19
194_E	218_L	0.566	0.19
38_T	43_Q	0.557	0.18
33_M	72_R	0.556	0.18
50_K	150_Y	0.552	0.18
225_D	232_D	0.550	0.18
53_M	138_G	0.544	0.18
137_T	142_R	0.543	0.18
237_P	243_D	0.541	0.18
214_D	232_D	0.541	0.18
110_R	137_T	0.539	0.18
79_Q	141_G	0.539	0.18
39_P	77_D	0.536	0.17
234_A	242_A	0.536	0.17
228_D	236_E	0.536	0.17
90_L	243_D	0.535	0.17
93_Q	165_G	0.534	0.17
221_G	227_E	0.531	0.17
199_A	225_D	0.531	0.17
207_D	225_D	0.531	0.17
106_G	172_K	0.530	0.17
203_D	237_P	0.529	0.17
142_R	181_K	0.527	0.17
5_L	46_L	0.526	0.17
137_T	178_V	0.524	0.17
36_A	171_M	0.522	0.17
229_A	233_A	0.522	0.17
16_Q	19_E	0.521	0.17
14_R	138_G	0.515	0.17
104_E	188_E	0.515	0.17
99_L	122_E	0.515	0.17
227_E	235_A	0.513	0.17
55_I	100_A	0.513	0.17
208_E	237_P	0.511	0.17
223_D	234_A	0.511	0.17
68_Q	71_E	0.509	0.16
207_D	238_E	0.506	0.16
218_L	221_G	0.505	0.16
136_V	184_P	0.504	0.16
50_K	102_A	0.504	0.16
232_D	243_D	0.502	0.16
232_D	238_E	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3j20C	1	0.6159	100	0.321	Contact Map
3zeyX	1	0.649	100	0.321	Contact Map
4w23D	1	0.702	100	0.33	Contact Map
3j7aD	1	0.5132	100	0.335	Contact Map
4bpeC	1	0.6987	100	0.336	Contact Map
4ujpE	1	0.702	100	0.34	Contact Map
4rb5C	1	0.6093	100	0.359	Contact Map
4kiyC	1	0.6093	100	0.368	Contact Map
4tp8C	1	0.6093	100	0.371	Contact Map
3bbnC	1	0.6093	100	0.389	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0108 seconds.