BACS1 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

BACS1 - Sensory rhodopsin-1

UniProt:	P0DMH8	Sequences: MDAVATAYLGGAVALIVGVAFVWLLYRSLDGSPHQSALAPLAIIPVFAGLSYVGMAYDIGTVIVNGNQIVGLRYIDWLVTTPILVGYVGYAAGASRRSIIGVMVADALMIAVGAGAVVTDGTLKWALFGVSSIFHLSLFAYLYVIFPRVVPDVPEQIGLFNLLKNHIGLLWLAYPLVWLFGPAGIGEATAAGVALTYVFLDVLAKVPYVYFFYARRRVFMHSESPPAPEQATVEATAAD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	239 (214)
Sequences:	709 (511)
Seq/√Len:	34.9

HALSA - BACS1 BACR BACH BACS2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_F	79_V	7.397	1.00
14_A	202_V	4.124	1.00
81_T	106_D	3.845	1.00
54_G	127_L	3.454	1.00
71_G	75_I	3.437	1.00
19_V	45_P	3.339	1.00
16_I	49_G	3.296	1.00
76_D	80_T	3.294	1.00
76_D	205_K	3.277	1.00
9_L	56_A	3.188	1.00
128_F	132_S	2.771	1.00
108_L	134_F	2.693	1.00
112_V	131_S	2.646	1.00
170_L	203_L	2.522	1.00
42_A	209_V	2.400	1.00
109_M	113_G	2.308	0.99
18_G	206_V	2.143	0.99
45_P	209_V	2.033	0.98
106_D	109_M	1.840	0.97
81_T	205_K	1.836	0.97
62_V	118_V	1.824	0.97
23_W	27_R	1.817	0.97
105_A	137_S	1.808	0.97
182_P	193_V	1.805	0.97
80_T	205_K	1.804	0.97
42_A	87_Y	1.788	0.96
81_T	109_M	1.748	0.96
8_Y	194_A	1.747	0.96
177_V	196_T	1.741	0.96
77_W	113_G	1.728	0.96
41_L	83_I	1.720	0.95
113_G	205_K	1.704	0.95
11_G	198_V	1.682	0.95
51_S	55_M	1.622	0.94
195_L	199_F	1.602	0.93
76_D	81_T	1.602	0.93
80_T	83_I	1.598	0.93
173_A	177_V	1.588	0.93
86_G	103_M	1.568	0.93
116_A	178_W	1.563	0.92
48_A	55_M	1.543	0.92
16_I	46_V	1.528	0.92
53_V	119_T	1.514	0.91
171_W	205_K	1.512	0.91
112_V	204_A	1.491	0.91
15_L	48_A	1.484	0.90
140_A	144_V	1.442	0.89
48_A	80_T	1.439	0.89
178_W	193_V	1.430	0.89
85_V	106_D	1.430	0.89
112_V	127_L	1.425	0.88
78_L	107_A	1.402	0.88
74_Y	77_W	1.390	0.87
48_A	175_P	1.384	0.87
18_G	210_Y	1.375	0.87
135_H	139_F	1.357	0.86
109_M	138_L	1.341	0.85
19_V	46_V	1.331	0.85
124_K	129_G	1.316	0.84
48_A	205_K	1.313	0.84
128_F	172_L	1.305	0.84
137_S	141_Y	1.292	0.83
179_L	185_I	1.258	0.81
12_A	49_G	1.237	0.80
72_L	79_V	1.205	0.78
48_A	76_D	1.195	0.78
48_A	87_Y	1.190	0.77
129_G	191_A	1.172	0.76
19_V	49_G	1.169	0.76
180_F	196_T	1.154	0.75
112_V	130_V	1.152	0.75
81_T	113_G	1.147	0.75
80_T	106_D	1.143	0.74
173_A	196_T	1.128	0.73
11_G	15_L	1.120	0.73
20_A	46_V	1.113	0.72
77_W	175_P	1.109	0.72
24_L	209_V	1.107	0.72
61_T	70_V	1.102	0.72
68_Q	181_G	1.096	0.71
14_A	206_V	1.087	0.71
7_A	11_G	1.086	0.71
46_V	203_L	1.081	0.70
44_I	83_I	1.072	0.70
114_A	121_G	1.047	0.68
16_I	202_V	1.046	0.68
85_V	113_G	1.043	0.67
15_L	206_V	1.042	0.67
166_H	211_F	1.036	0.67
79_V	137_S	1.035	0.67
80_T	113_G	1.034	0.67
102_V	141_Y	1.032	0.67
40_P	95_S	1.026	0.66
177_V	200_L	1.026	0.66
93_G	168_G	1.019	0.66
64_V	158_G	1.018	0.66
9_L	114_A	1.011	0.65
85_V	94_A	1.010	0.65
48_A	109_M	0.998	0.64
46_V	50_L	0.991	0.63
24_L	45_P	0.986	0.63
189_T	192_G	0.983	0.63
72_L	115_G	0.981	0.63
160_F	164_K	0.980	0.63
110_I	205_K	0.975	0.62
84_L	87_Y	0.971	0.62
130_V	147_P	0.970	0.62
135_H	168_G	0.965	0.61
51_S	54_G	0.957	0.61
48_A	84_L	0.954	0.60
93_G	125_W	0.954	0.60
81_T	171_W	0.953	0.60
49_G	53_V	0.953	0.60
125_W	179_L	0.950	0.60
106_D	204_A	0.947	0.60
129_G	133_I	0.938	0.59
150_V	154_P	0.929	0.58
50_L	108_L	0.929	0.58
165_N	169_L	0.928	0.58
51_S	117_V	0.926	0.58
77_W	82_P	0.923	0.58
147_P	164_K	0.921	0.58
188_A	192_G	0.916	0.57
114_A	197_Y	0.911	0.57
113_G	208_Y	0.907	0.57
127_L	189_T	0.906	0.56
75_I	143_Y	0.902	0.56
114_A	118_V	0.902	0.56
89_G	99_I	0.900	0.56
16_I	160_F	0.887	0.55
74_Y	82_P	0.887	0.55
185_I	188_A	0.885	0.55
126_A	192_G	0.882	0.54
18_G	148_R	0.873	0.54
101_G	141_Y	0.856	0.52
113_G	175_P	0.849	0.52
108_L	130_V	0.848	0.52
215_R	218_V	0.847	0.51
123_L	185_I	0.844	0.51
127_L	199_F	0.840	0.51
178_W	200_L	0.833	0.50
133_I	207_P	0.832	0.50
42_A	103_M	0.830	0.50
130_V	180_F	0.829	0.50
18_G	24_L	0.829	0.50
166_H	170_L	0.823	0.49
70_V	194_A	0.820	0.49
208_Y	213_Y	0.820	0.49
34_H	43_I	0.817	0.49
103_M	107_A	0.815	0.49
138_L	141_Y	0.815	0.49
154_P	157_I	0.808	0.48
20_A	155_E	0.801	0.47
27_R	100_I	0.794	0.47
110_I	206_V	0.792	0.47
178_W	184_G	0.791	0.47
15_L	113_G	0.789	0.46
74_Y	208_Y	0.783	0.46
11_G	48_A	0.782	0.46
11_G	50_L	0.782	0.46
135_H	172_L	0.775	0.45
12_A	16_I	0.775	0.45
152_D	199_F	0.769	0.45
94_A	98_S	0.769	0.45
97_R	101_G	0.768	0.45
42_A	45_P	0.761	0.44
129_G	185_I	0.761	0.44
68_Q	190_A	0.758	0.44
170_L	204_A	0.757	0.44
83_I	116_A	0.757	0.44
92_A	155_E	0.755	0.44
192_G	196_T	0.753	0.43
18_G	207_P	0.753	0.43
122_T	179_L	0.752	0.43
95_S	188_A	0.751	0.43
143_Y	168_G	0.746	0.43
60_G	193_V	0.745	0.43
52_Y	55_M	0.742	0.42
24_L	162_L	0.742	0.42
150_V	170_L	0.737	0.42
6_T	10_G	0.736	0.42
69_I	188_A	0.734	0.42
11_G	202_V	0.728	0.41
188_A	195_L	0.724	0.41
167_I	204_A	0.724	0.41
25_L	49_G	0.722	0.41
81_T	110_I	0.721	0.41
60_G	67_N	0.718	0.40
87_Y	212_F	0.718	0.40
17_V	202_V	0.711	0.40
58_D	70_V	0.710	0.40
76_D	83_I	0.709	0.40
64_V	121_G	0.709	0.40
7_A	13_V	0.707	0.40
106_D	205_K	0.707	0.40
27_R	30_D	0.706	0.39
12_A	53_V	0.703	0.39
54_G	219_F	0.697	0.39
172_L	175_P	0.697	0.39
179_L	196_T	0.695	0.39
148_R	156_Q	0.693	0.38
150_V	156_Q	0.690	0.38
53_V	126_A	0.689	0.38
48_A	171_W	0.678	0.37
161_N	169_L	0.678	0.37
120_D	207_P	0.675	0.37
109_M	131_S	0.674	0.37
139_F	163_L	0.673	0.37
122_T	149_V	0.672	0.37
173_A	176_L	0.672	0.37
13_V	50_L	0.659	0.36
205_K	209_V	0.656	0.35
128_F	133_I	0.654	0.35
109_M	175_P	0.652	0.35
118_V	129_G	0.651	0.35
8_Y	136_L	0.649	0.35
57_Y	184_G	0.645	0.35
158_G	161_N	0.644	0.35
67_N	70_V	0.644	0.35
65_N	69_I	0.643	0.34
93_G	146_F	0.643	0.34
44_I	84_L	0.640	0.34
73_R	205_K	0.637	0.34
27_R	39_A	0.636	0.34
85_V	99_I	0.635	0.34
44_I	87_Y	0.633	0.34
139_F	143_Y	0.630	0.33
69_I	117_V	0.628	0.33
102_V	106_D	0.628	0.33
193_V	197_Y	0.628	0.33
78_L	195_L	0.626	0.33
102_V	146_F	0.625	0.33
58_D	119_T	0.623	0.33
116_A	128_F	0.619	0.33
111_A	161_N	0.617	0.32
15_L	76_D	0.615	0.32
80_T	204_A	0.610	0.32
85_V	204_A	0.606	0.32
71_G	193_V	0.606	0.32
106_D	138_L	0.603	0.31
20_A	202_V	0.603	0.31
23_W	26_Y	0.602	0.31
159_L	166_H	0.602	0.31
136_L	186_G	0.598	0.31
76_D	87_Y	0.598	0.31
4_V	118_V	0.597	0.31
20_A	210_Y	0.595	0.31
109_M	132_S	0.594	0.31
126_A	179_L	0.593	0.31
136_L	172_L	0.591	0.31
53_V	185_I	0.590	0.30
41_L	124_K	0.590	0.30
28_S	46_V	0.590	0.30
100_I	140_A	0.589	0.30
129_G	132_S	0.589	0.30
91_A	216_R	0.587	0.30
123_L	176_L	0.582	0.30
57_Y	125_W	0.581	0.30
164_K	176_L	0.581	0.30
182_P	197_Y	0.576	0.29
152_D	180_F	0.574	0.29
108_L	128_F	0.573	0.29
104_V	108_L	0.571	0.29
28_S	32_S	0.570	0.29
180_F	188_A	0.568	0.29
159_L	177_V	0.567	0.29
109_M	171_W	0.565	0.29
65_N	169_L	0.562	0.28
119_T	123_L	0.559	0.28
115_G	119_T	0.558	0.28
201_D	212_F	0.557	0.28
15_L	140_A	0.551	0.28
121_G	184_G	0.551	0.28
53_V	57_Y	0.548	0.28
19_V	139_F	0.547	0.27
122_T	126_A	0.547	0.27
103_M	199_F	0.545	0.27
26_Y	30_D	0.545	0.27
97_R	192_G	0.545	0.27
49_G	111_A	0.544	0.27
128_F	131_S	0.544	0.27
44_I	208_Y	0.542	0.27
170_L	176_L	0.540	0.27
100_I	149_V	0.538	0.27
167_I	212_F	0.536	0.27
186_G	198_V	0.536	0.27
80_T	116_A	0.534	0.27
185_I	198_V	0.534	0.27
59_I	123_L	0.533	0.27
136_L	165_N	0.533	0.27
14_A	110_I	0.531	0.26
66_G	192_G	0.531	0.26
19_V	161_N	0.530	0.26
121_G	186_G	0.529	0.26
63_I	69_I	0.528	0.26
108_L	152_D	0.528	0.26
167_I	208_Y	0.527	0.26
13_V	49_G	0.524	0.26
111_A	214_A	0.523	0.26
44_I	178_W	0.522	0.26
25_L	30_D	0.521	0.26
17_V	140_A	0.521	0.26
4_V	212_F	0.519	0.26
123_L	126_A	0.519	0.26
92_A	103_M	0.518	0.26
59_I	119_T	0.516	0.25
92_A	163_L	0.516	0.25
214_A	218_V	0.514	0.25
165_N	170_L	0.512	0.25
97_R	144_V	0.510	0.25
137_S	142_L	0.509	0.25
13_V	78_L	0.509	0.25
142_L	204_A	0.506	0.25
77_W	174_Y	0.506	0.25
9_L	12_A	0.506	0.25
103_M	218_V	0.505	0.25
61_T	68_Q	0.503	0.25
118_V	123_L	0.503	0.25
11_G	14_A	0.501	0.24
43_I	178_W	0.500	0.24
28_S	218_V	0.500	0.24

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qi1A	3	0.9079	100	0.183	Contact Map
3wqjA	3	0.9038	100	0.186	Contact Map
3qapA	1	0.9079	100	0.186	Contact Map
1xioA	2	0.8787	100	0.191	Contact Map
4fbzA	3	0.9414	100	0.192	Contact Map
4l35A	3	0.9498	100	0.205	Contact Map
3wt9A	1	0.9163	100	0.205	Contact Map
1m0kA	3	0.8912	100	0.208	Contact Map
3am6A	3	0.8996	100	0.208	Contact Map
3ddlA	2	0.9289	100	0.232	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0079 seconds.