GREMLIN Database
RS7 - 30S ribosomal protein S7
UniProt: P0CX01 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 210 (185)
Sequences: 413 (185)
Seq/√Len: 13.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
134_L141_V4.2661.00
198_Q201_E3.9371.00
79_A96_L3.5510.99
36_V115_I3.1910.98
35_D38_E2.9410.97
78_L179_L2.8170.96
78_L99_V2.7420.95
27_N35_D2.6250.94
164_A183_L2.4310.91
70_S150_Q2.2460.87
74_I117_V2.1030.83
131_T142_P2.0730.82
30_L36_V2.0690.82
112_E120_S2.0630.82
98_I175_A2.0020.80
56_A67_F1.9910.79
155_Q159_F1.9570.78
142_P209_A1.9070.76
105_I184_A1.8870.75
98_I176_A1.8320.73
182_Q193_T1.8020.72
134_L143_Q1.7800.71
103_F118_L1.7750.70
122_V153_V1.7540.70
50_L148_A1.7160.68
33_K104_D1.7120.68
173_T198_Q1.7080.67
135_K209_A1.6680.66
120_S123_E1.6490.65
196_I199_K1.6230.63
44_P79_A1.6060.62
141_V170_K1.5990.62
105_I180_A1.5770.61
200_K207_A1.5500.60
160_L195_A1.5350.59
104_D107_H1.5280.58
135_K141_V1.5230.58
183_L195_A1.5210.58
121_A124_N1.5100.58
144_A191_V1.5080.57
68_K208_A1.5030.57
140_S144_A1.4690.55
86_G165_H1.4500.54
81_R84_K1.4430.54
126_A207_A1.4410.54
86_G89_A1.4210.53
125_A183_L1.4210.53
123_E126_A1.4180.53
134_L139_I1.3920.51
87_A165_H1.3850.51
79_A99_V1.3820.51
131_T159_F1.3780.51
58_T61_R1.3760.50
81_R159_F1.3660.50
187_A204_R1.3550.49
135_K142_P1.3510.49
185_G190_N1.3510.49
46_T199_K1.3130.47
107_H208_A1.2630.44
152_R206_A1.2510.44
32_G144_A1.2460.43
162_D194_Y1.2270.43
46_T56_A1.2240.42
87_A169_F1.2060.41
135_K207_A1.1980.41
166_S197_G1.1820.40
81_R157_L1.1740.40
98_I179_L1.1720.40
53_T131_T1.1700.40
73_S140_S1.1660.39
62_H72_I1.1630.39
93_Q97_K1.1590.39
116_Q120_S1.1590.39
85_T207_A1.1490.38
141_V209_A1.1440.38
27_N37_A1.1360.38
116_Q163_G1.1220.37
93_Q202_K1.1190.37
132_V141_V1.1120.37
32_G168_S1.0890.35
42_E120_S1.0780.35
95_A187_A1.0690.35
63_A99_V1.0610.34
68_K122_V1.0590.34
156_A210_R1.0520.34
160_L186_A1.0490.34
88_N126_A1.0460.33
99_V103_F1.0450.33
40_H47_R1.0440.33
73_S147_T1.0270.33
166_S192_Q1.0240.32
100_R122_V1.0210.32
139_I190_N1.0210.32
167_A178_A1.0210.32
133_R140_S1.0140.32
28_A53_T1.0130.32
72_I188_D1.0100.32
68_K205_V1.0060.32
85_T162_D0.9970.31
143_Q155_Q0.9940.31
47_R54_P0.9860.31
112_E198_Q0.9850.31
200_K205_V0.9820.30
58_T81_R0.9770.30
89_A209_A0.9740.30
157_L204_R0.9610.29
100_R104_D0.9580.29
88_N98_I0.9570.29
162_D167_A0.9540.29
34_W63_A0.9450.29
45_S176_A0.9370.28
175_A178_A0.9310.28
26_A36_V0.9150.27
59_M143_Q0.9130.27
115_I174_D0.9100.27
120_S196_I0.9100.27
43_D152_R0.9090.27
48_R155_Q0.9080.27
130_E197_G0.9040.27
45_S109_R0.8960.27
37_A155_Q0.8950.27
174_D197_G0.8950.27
110_T184_A0.8920.27
46_T148_A0.8790.26
115_I202_K0.8780.26
97_K100_R0.8710.26
106_V117_V0.8700.26
50_L65_K0.8690.26
49_Y69_K0.8670.25
119_V124_N0.8610.25
173_T197_G0.8570.25
49_Y139_I0.8570.25
60_G179_L0.8570.25
129_E145_V0.8560.25
159_F162_D0.8560.25
61_R96_L0.8490.25
54_P208_A0.8480.25
83_M92_K0.8480.25
63_A144_A0.8450.25
111_D181_N0.8420.24
86_G155_Q0.8400.24
183_L202_K0.8380.24
30_L183_L0.8350.24
82_L201_E0.8300.24
123_E207_A0.8280.24
40_H117_V0.8170.24
29_K35_D0.8150.23
178_A194_Y0.8120.23
36_V169_F0.8090.23
101_D176_A0.8080.23
34_W166_S0.8050.23
32_G111_D0.8030.23
151_R179_L0.7930.23
72_I96_L0.7910.23
201_E205_V0.7840.22
41_Y198_Q0.7810.22
47_R71_E0.7740.22
72_I81_R0.7710.22
126_A185_G0.7590.21
173_T181_N0.7410.21
103_F115_I0.7390.21
68_K147_T0.7380.21
73_S177_E0.7370.21
57_H133_R0.7330.20
94_Q97_K0.7290.20
52_V155_Q0.7260.20
44_P54_P0.7240.20
37_A101_D0.7220.20
153_V159_F0.7220.20
159_F207_A0.7140.20
46_T201_E0.7130.20
81_R162_D0.7080.20
37_A115_I0.7070.20
39_I192_Q0.7060.20
154_D190_N0.6850.19
118_L200_K0.6830.19
29_K47_R0.6720.18
67_F74_I0.6660.18
59_M96_L0.6640.18
39_I53_T0.6630.18
162_D183_L0.6630.18
120_S187_A0.6630.18
81_R198_Q0.6590.18
87_A192_Q0.6560.18
102_A111_D0.6550.18
185_G192_Q0.6520.18
62_H144_A0.6480.18
37_A160_L0.6470.18
126_A143_Q0.6450.18
86_G134_L0.6430.17
34_W107_H0.6390.17
128_R146_D0.6380.17
32_G73_S0.6340.17
60_G132_V0.6340.17
74_I177_E0.6330.17
123_E136_Y0.6330.17
95_A176_A0.6320.17
54_P158_K0.6310.17
40_H161_A0.6280.17
30_L72_I0.6280.17
99_V181_N0.6250.17
51_A82_L0.6220.17
173_T188_D0.6210.17
86_G141_V0.6160.17
118_L157_L0.6150.17
49_Y58_T0.6140.17
102_A153_V0.6130.17
125_A166_S0.6100.16
55_V82_L0.6090.16
35_D89_A0.6090.16
130_E170_K0.6090.16
164_A167_A0.6090.16
189_Y196_I0.6080.16
129_E148_A0.6070.16
45_S49_Y0.6070.16
81_R103_F0.6060.16
98_I199_K0.6010.16
192_Q197_G0.6010.16
101_D187_A0.5970.16
97_K199_K0.5970.16
72_I173_T0.5960.16
160_L174_D0.5930.16
115_I162_D0.5900.16
132_V143_Q0.5890.16
116_Q119_V0.5890.16
64_Q207_A0.5860.16
53_T166_S0.5850.16
105_I196_I0.5840.16
125_A160_L0.5820.16
146_D203_E0.5810.16
148_A192_Q0.5810.16
128_R163_G0.5770.16
36_V160_L0.5760.16
85_T209_A0.5760.16
49_Y67_F0.5750.15
80_N139_I0.5740.15
33_K178_A0.5710.15
40_H150_Q0.5700.15
90_G138_G0.5690.15
118_L160_L0.5690.15
37_A85_T0.5680.15
86_G160_L0.5680.15
46_T52_V0.5680.15
29_K183_L0.5640.15
121_A138_G0.5550.15
112_E123_E0.5530.15
179_L196_I0.5520.15
30_L82_L0.5510.15
165_H197_G0.5500.15
167_A175_A0.5480.15
177_E184_A0.5440.15
72_I144_A0.5410.15
155_Q202_K0.5400.15
164_A179_L0.5370.14
57_H116_Q0.5320.14
96_L202_K0.5290.14
77_R154_D0.5260.14
50_L192_Q0.5250.14
129_E203_E0.5250.14
29_K176_A0.5240.14
34_W60_G0.5230.14
167_A173_T0.5180.14
64_Q189_Y0.5170.14
88_N94_Q0.5150.14
100_R175_A0.5130.14
41_Y112_E0.5130.14
141_V155_Q0.5110.14
96_L176_A0.5110.14
161_A164_A0.5100.14
41_Y191_V0.5080.14
126_A200_K0.5080.14
84_K139_I0.5080.14
180_A184_A0.5060.14
144_A150_Q0.5050.14
154_D209_A0.5050.14
28_A144_A0.5010.14
67_F76_E0.5000.13
62_H73_S0.5000.13
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1iqvA 1 0.7857 100 0.197 Contact Map
3j7aI 1 0.8333 100 0.2 Contact Map
3zey2 1 0.881 100 0.2 Contact Map
4ujpG 1 0.9095 100 0.201 Contact Map
4bpeG 1 0.881 100 0.201 Contact Map
3j38F 1 0.8762 100 0.214 Contact Map
5aj3G 1 0.8048 100 0.428 Contact Map
4tp8G 1 0.7048 100 0.441 Contact Map
1rssA 1 0.6476 100 0.442 Contact Map
4kiyG 1 0.7048 100 0.442 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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