ARSC - HALSA - GREMLIN Contacts

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ARSC - Putative arsenate reductase

UniProt:	O52030	Sequences: MSADSTTKFGFVCVQNAGRSQMSTAFAERERERRDLEDSVEILTGGTHPADHVHEEVVEVMGEEGFDLSERTPREVSTDELESCDIVATMGCSTLELDAETVDVRDWALDDPDGQEMEQVREIRDDIEQRVVDLFDEFNPDD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	142 (127)
Sequences:	7752 (5283)
Seq/√Len:	468.8

ECOLI - ETP WZB
BACSU - YFKJ PAP ARSC
HALSA - ARSC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
30_E	132_V	3.515	1.00
24_T	28_E	2.887	1.00
8_K	41_E	2.855	1.00
61_M	68_L	2.249	1.00
30_E	128_E	2.221	1.00
110_D	126_D	2.157	1.00
128_E	132_V	2.142	1.00
92_C	108_A	2.084	1.00
63_E	121_R	2.067	1.00
115_Q	119_Q	2.000	1.00
14_V	94_T	1.982	1.00
59_E	117_M	1.966	1.00
89_T	98_D	1.885	1.00
64_E	128_E	1.854	1.00
28_E	42_I	1.821	1.00
76_V	98_D	1.797	1.00
22_M	57_V	1.762	1.00
11_F	27_A	1.751	1.00
64_E	124_R	1.744	1.00
10_G	45_G	1.704	1.00
60_V	124_R	1.688	1.00
22_M	61_M	1.656	1.00
117_M	121_R	1.641	1.00
27_A	42_I	1.620	1.00
60_V	121_R	1.613	1.00
122_E	126_D	1.557	1.00
25_A	66_F	1.547	1.00
9_F	27_A	1.534	1.00
60_V	63_E	1.478	1.00
53_V	58_V	1.460	1.00
14_V	48_H	1.451	1.00
26_F	64_E	1.405	1.00
79_D	83_S	1.394	1.00
89_T	95_L	1.393	1.00
116_E	119_Q	1.363	1.00
64_E	125_D	1.362	1.00
119_Q	122_E	1.351	1.00
26_F	124_R	1.303	1.00
43_L	74_R	1.297	1.00
15_Q	113_D	1.279	1.00
43_L	84_C	1.272	1.00
25_A	68_L	1.253	1.00
53_V	71_R	1.249	1.00
26_F	131_V	1.248	1.00
26_F	127_I	1.236	1.00
49_P	75_E	1.230	1.00
59_E	63_E	1.221	1.00
8_K	43_L	1.220	1.00
36_L	39_S	1.219	1.00
133_D	136_D	1.200	1.00
63_E	117_M	1.197	1.00
56_E	117_M	1.193	1.00
41_E	83_S	1.176	1.00
27_A	131_V	1.173	1.00
22_M	124_R	1.163	1.00
101_T	106_D	1.158	1.00
47_T	97_L	1.158	1.00
30_E	131_V	1.155	1.00
10_G	84_C	1.148	1.00
56_E	59_E	1.131	1.00
58_V	62_G	1.110	1.00
57_V	120_V	1.096	1.00
58_V	68_L	1.078	1.00
101_T	105_R	1.041	1.00
11_F	131_V	1.038	1.00
8_K	83_S	1.033	1.00
8_K	84_C	1.032	1.00
52_H	58_V	1.029	1.00
74_R	80_E	1.027	1.00
7_T	86_I	1.017	1.00
60_V	64_E	1.015	1.00
66_F	128_E	1.007	1.00
11_F	23_S	1.005	1.00
101_T	104_V	1.003	1.00
26_F	66_F	1.002	1.00
60_V	117_M	0.996	1.00
121_R	125_D	0.994	1.00
56_E	116_E	0.990	1.00
53_V	68_L	0.980	1.00
45_G	76_V	0.970	1.00
30_E	135_F	0.961	1.00
86_I	134_L	0.939	1.00
54_H	120_V	0.933	1.00
88_A	134_L	0.932	1.00
25_A	71_R	0.920	1.00
107_W	130_R	0.919	1.00
57_V	60_V	0.909	1.00
25_A	28_E	0.907	1.00
45_G	74_R	0.898	1.00
66_F	124_R	0.895	1.00
81_L	87_V	0.894	1.00
55_E	59_E	0.894	1.00
26_F	128_E	0.888	1.00
79_D	82_E	0.867	1.00
23_S	90_M	0.850	1.00
91_G	94_T	0.844	1.00
93_S	97_L	0.843	1.00
110_D	122_E	0.825	1.00
109_L	126_D	0.820	1.00
25_A	53_V	0.810	1.00
81_L	84_C	0.808	1.00
125_D	129_Q	0.804	1.00
68_L	71_R	0.801	1.00
133_D	137_E	0.794	1.00
62_G	68_L	0.793	1.00
119_Q	123_I	0.791	1.00
23_S	127_I	0.782	1.00
14_V	93_S	0.777	1.00
109_L	127_I	0.776	1.00
21_Q	53_V	0.771	1.00
109_L	123_I	0.766	1.00
124_R	128_E	0.755	1.00
61_M	66_F	0.754	1.00
43_L	83_S	0.745	1.00
26_F	61_M	0.725	1.00
10_G	87_V	0.713	1.00
95_L	99_A	0.711	1.00
14_V	91_G	0.711	1.00
77_S	80_E	0.704	1.00
102_V	105_R	0.703	1.00
129_Q	133_D	0.701	1.00
29_R	66_F	0.700	1.00
59_E	62_G	0.697	1.00
11_F	90_M	0.695	1.00
51_D	73_P	0.694	1.00
134_L	138_F	0.688	1.00
90_M	109_L	0.685	1.00
90_M	94_T	0.683	1.00
28_E	41_E	0.680	1.00
27_A	40_V	0.671	1.00
9_F	86_I	0.668	1.00
118_E	122_E	0.657	1.00
92_C	96_E	0.655	1.00
52_H	72_T	0.648	1.00
48_H	75_E	0.648	1.00
102_V	106_D	0.646	1.00
126_D	130_R	0.643	1.00
47_T	98_D	0.641	1.00
123_I	127_I	0.639	1.00
36_L	135_F	0.639	1.00
67_D	70_E	0.638	1.00
26_F	30_E	0.632	1.00
76_V	81_L	0.628	0.99
29_R	128_E	0.616	0.99
47_T	94_T	0.609	0.99
48_H	97_L	0.598	0.99
78_T	82_E	0.594	0.99
22_M	123_I	0.592	0.99
18_G	120_V	0.589	0.99
37_E	40_V	0.585	0.99
97_L	100_E	0.582	0.99
36_L	40_V	0.569	0.99
80_E	84_C	0.569	0.99
50_A	73_P	0.566	0.99
15_Q	18_G	0.566	0.99
81_L	104_V	0.564	0.99
62_G	67_D	0.561	0.99
24_T	44_T	0.556	0.99
114_G	119_Q	0.554	0.99
132_V	136_D	0.552	0.99
23_S	131_V	0.548	0.99
99_A	102_V	0.542	0.98
82_E	104_V	0.542	0.98
127_I	131_V	0.540	0.98
73_P	76_V	0.536	0.98
99_A	105_R	0.535	0.98
11_F	88_A	0.533	0.98
28_E	70_E	0.533	0.98
17_A	54_H	0.533	0.98
15_Q	48_H	0.532	0.98
54_H	57_V	0.532	0.98
19_R	111_D	0.531	0.98
123_I	126_D	0.530	0.98
11_F	134_L	0.528	0.98
62_G	69_S	0.525	0.98
46_G	49_P	0.521	0.98
14_V	97_L	0.520	0.98
12_V	87_V	0.518	0.98
99_A	106_D	0.517	0.98
25_A	29_R	0.516	0.98
54_H	113_D	0.514	0.98
27_A	135_F	0.513	0.98
27_A	30_E	0.510	0.98
22_M	60_V	0.509	0.98
56_E	115_Q	0.508	0.98
110_D	119_Q	0.503	0.98
100_E	106_D	0.503	0.98
103_D	106_D	0.501	0.97
110_D	123_I	0.500	0.97
109_L	130_R	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3t38A	2	0.9296	100	0.121	Contact Map
1u2pA	1	0.9507	100	0.138	Contact Map
4lrqA	2	0.9296	100	0.14	Contact Map
2cwdA	1	0.9577	100	0.14	Contact Map
3jviA	1	0.9437	100	0.142	Contact Map
2gi4A	1	0.9507	100	0.15	Contact Map
4etmA	2	0.9789	100	0.15	Contact Map
3rh0A	1	0.8944	100	0.152	Contact Map
1d1qA	1	0.9577	100	0.152	Contact Map
2l17A	1	0.9014	100	0.153	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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