O51969 - HALSA - GREMLIN Contacts

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O51969 - SojB

UniProt:	O51969	Sequences: MAHRLTVANEKGGVGKTTIAINVAGALADRGHDVLFVDLDAQGNGTIGLGLDAAYTGDGISLYDILTDLDAQQQIDAVIRSHEEFDVLPSHIDMFSAESELQTAMRGRERLWMALDELHADYDYIIIDAPPSLGLLTDNALLACRNVLIPALPEEASRHALDILFGHVDTLEDGYGVDIDPIGLVANRIEVDGEADRILEWFDEQYKSLPLWRIRNRVGIKRAWANGTSVFGHSETTDMDERFQAIAAHLERTE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	254 (235)
Sequences:	18088 (11799)
Seq/√Len:	769.7

ECOLI - MIND BCSQ MRP
BACSU - SOJ YLXH MIND SALA YVEL YWQD
HALSA - O51969 Q9HHZ7 Q9HHU2 O51991 O54573 Q9HNF1 Q9HHL5 Q9HQY5 Q9HQJ7
SULSO - Q97ZW4 Q981B3 Q97VX7 Q97WA2 Q97YM8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
86_D	122_Y	3.871	1.00
215_R	242_R	3.834	1.00
20_A	126_I	3.742	1.00
30_R	248_A	3.256	1.00
32_H	124_Y	3.251	1.00
27_L	124_Y	3.133	1.00
19_I	243_F	2.886	1.00
229_S	232_G	2.863	1.00
152_L	188_R	2.810	1.00
3_H	146_N	2.784	1.00
6_T	144_C	2.766	1.00
35_L	122_Y	2.671	1.00
36_F	45_G	2.646	1.00
188_R	216_N	2.511	1.00
21_I	45_G	2.506	1.00
24_A	36_F	2.201	1.00
146_N	182_I	2.147	1.00
33_D	123_D	2.123	1.00
48_G	156_A	2.109	1.00
219_G	222_R	2.095	1.00
26_A	231_F	2.055	1.00
29_D	244_Q	1.992	1.00
7_V	23_V	1.984	1.00
190_E	216_N	1.978	1.00
20_A	36_F	1.929	1.00
19_I	185_V	1.926	1.00
30_R	244_Q	1.876	1.00
27_L	126_I	1.828	1.00
26_A	247_A	1.824	1.00
80_R	86_D	1.800	1.00
75_I	121_D	1.786	1.00
47_I	159_H	1.782	1.00
185_V	246_I	1.759	1.00
186_A	199_L	1.757	1.00
39_L	140_A	1.723	1.00
21_I	48_G	1.714	1.00
201_W	205_Q	1.691	1.00
6_T	129_A	1.688	1.00
4_R	127_I	1.687	1.00
200_E	204_E	1.678	1.00
32_H	123_D	1.668	1.00
24_A	126_I	1.662	1.00
28_A	85_F	1.608	1.00
202_F	206_Y	1.595	1.00
146_N	183_G	1.578	1.00
217_R	239_M	1.570	1.00
199_L	203_D	1.559	1.00
21_I	49_L	1.536	1.00
212_W	249_H	1.511	1.00
7_V	148_L	1.504	1.00
61_S	64_D	1.491	1.00
15_G	187_N	1.478	1.00
228_T	233_H	1.428	1.00
200_E	213_R	1.412	1.00
212_W	246_I	1.409	1.00
27_L	34_V	1.399	1.00
39_L	127_I	1.398	1.00
218_V	222_R	1.377	1.00
44_N	160_A	1.364	1.00
189_I	213_R	1.356	1.00
49_L	85_F	1.356	1.00
147_V	168_V	1.343	1.00
8_A	164_L	1.337	1.00
148_L	185_V	1.330	1.00
28_A	84_E	1.318	1.00
23_V	250_L	1.316	1.00
60_I	64_D	1.312	1.00
3_H	145_R	1.307	1.00
154_E	157_S	1.305	1.00
153_P	186_A	1.293	1.00
39_L	62_L	1.291	1.00
7_V	20_A	1.280	1.00
241_E	244_Q	1.268	1.00
222_R	226_N	1.268	1.00
77_A	80_R	1.260	1.00
19_I	187_N	1.255	1.00
237_T	240_D	1.254	1.00
146_N	180_D	1.249	1.00
214_I	239_M	1.244	1.00
219_G	234_S	1.239	1.00
35_L	125_I	1.233	1.00
24_A	45_G	1.215	1.00
51_L	87_V	1.202	1.00
191_V	194_E	1.196	1.00
17_T	48_G	1.195	1.00
211_L	249_H	1.185	1.00
17_T	45_G	1.179	1.00
8_A	129_A	1.176	1.00
245_A	249_H	1.166	1.00
197_R	200_E	1.164	1.00
26_A	30_R	1.157	1.00
92_I	163_I	1.153	1.00
67_T	71_A	1.151	1.00
154_E	221_K	1.147	1.00
63_Y	67_T	1.139	1.00
228_T	232_G	1.133	1.00
23_V	247_A	1.129	1.00
162_D	205_Q	1.125	1.00
245_A	248_A	1.114	1.00
201_W	204_E	1.114	1.00
106_R	109_E	1.094	1.00
109_E	112_W	1.093	1.00
244_Q	248_A	1.092	1.00
242_R	245_A	1.092	1.00
197_R	201_W	1.087	1.00
187_N	243_F	1.071	1.00
19_I	23_V	1.066	1.00
22_N	25_G	1.064	1.00
98_E	134_G	1.059	1.00
220_I	239_M	1.043	1.00
44_N	156_A	1.041	1.00
210_P	213_R	1.034	1.00
25_G	29_D	1.031	1.00
97_A	100_E	1.030	1.00
41_A	136_L	1.026	1.00
217_R	237_T	1.023	1.00
77_A	81_S	1.015	1.00
33_D	121_D	1.014	1.00
238_D	241_E	1.010	1.00
37_V	127_I	1.002	1.00
156_A	224_W	0.995	1.00
43_G	46_T	0.985	1.00
114_A	117_E	0.981	1.00
112_W	116_D	0.980	1.00
24_A	85_F	0.969	1.00
86_D	120_A	0.967	1.00
82_H	232_G	0.957	1.00
198_I	201_W	0.955	1.00
4_R	125_I	0.954	1.00
103_T	107_G	0.946	1.00
26_A	29_D	0.944	1.00
77_A	88_L	0.940	1.00
5_L	124_Y	0.936	1.00
18_T	220_I	0.928	1.00
166_G	169_D	0.927	1.00
129_A	140_A	0.926	1.00
149_I	161_L	0.912	1.00
27_L	247_A	0.902	1.00
22_N	231_F	0.898	1.00
209_L	249_H	0.896	1.00
200_E	203_D	0.890	1.00
5_L	250_L	0.887	1.00
226_N	233_H	0.887	1.00
62_L	65_I	0.885	1.00
49_L	87_V	0.885	1.00
150_P	187_N	0.883	1.00
239_M	242_R	0.876	1.00
87_V	92_I	0.873	1.00
231_F	244_Q	0.873	1.00
4_R	119_H	0.865	1.00
75_I	78_V	0.864	1.00
26_A	244_Q	0.863	1.00
34_V	124_Y	0.856	1.00
42_Q	134_G	0.856	1.00
149_I	164_L	0.854	1.00
238_D	242_R	0.851	1.00
18_T	224_W	0.851	1.00
7_V	19_I	0.847	1.00
195_A	198_I	0.847	1.00
153_P	189_I	0.847	1.00
217_R	238_D	0.845	1.00
246_I	250_L	0.843	1.00
235_E	240_D	0.840	1.00
75_I	81_S	0.839	1.00
96_S	99_S	0.832	1.00
8_A	137_T	0.830	1.00
29_D	232_G	0.821	1.00
64_D	71_A	0.821	1.00
110_R	114_A	0.818	1.00
230_V	240_D	0.816	1.00
203_D	213_R	0.814	1.00
78_V	81_S	0.813	1.00
64_D	69_L	0.812	1.00
234_S	237_T	0.793	1.00
25_G	231_F	0.792	1.00
43_G	90_S	0.792	1.00
110_R	113_M	0.789	1.00
152_L	157_S	0.789	1.00
149_I	165_F	0.788	1.00
198_I	203_D	0.788	1.00
183_G	210_P	0.786	1.00
37_V	125_I	0.786	1.00
86_D	89_P	0.778	1.00
241_E	245_A	0.778	1.00
104_A	108_R	0.774	1.00
236_T	241_E	0.773	1.00
111_L	114_A	0.773	1.00
5_L	146_N	0.768	1.00
16_K	131_P	0.768	1.00
214_I	242_R	0.763	1.00
113_M	117_E	0.763	1.00
65_I	72_Q	0.758	1.00
196_D	200_E	0.755	1.00
162_D	166_G	0.753	1.00
140_A	144_C	0.753	1.00
25_G	232_G	0.748	1.00
122_Y	125_I	0.738	1.00
198_I	206_Y	0.736	1.00
65_I	114_A	0.733	1.00
147_V	179_I	0.733	1.00
75_I	79_I	0.729	1.00
114_A	118_L	0.727	1.00
68_D	71_A	0.726	1.00
3_H	182_I	0.722	1.00
7_V	126_I	0.722	1.00
153_P	195_A	0.719	1.00
64_D	67_T	0.713	1.00
22_N	229_S	0.709	1.00
64_D	70_D	0.707	1.00
165_F	169_D	0.707	1.00
231_F	240_D	0.706	1.00
47_I	155_E	0.705	1.00
14_V	157_S	0.701	1.00
97_A	101_L	0.698	1.00
199_L	213_R	0.697	1.00
19_I	150_P	0.697	1.00
186_A	189_I	0.696	1.00
199_L	202_F	0.696	1.00
29_D	231_F	0.694	1.00
112_W	115_L	0.694	1.00
195_A	202_F	0.694	1.00
235_E	241_E	0.691	1.00
10_E	167_H	0.691	1.00
34_V	126_I	0.690	1.00
5_L	182_I	0.687	1.00
78_V	86_D	0.684	1.00
81_S	87_V	0.681	1.00
189_I	196_D	0.679	1.00
104_A	110_R	0.679	1.00
19_I	214_I	0.679	1.00
151_A	199_L	0.674	1.00
36_F	49_L	0.672	1.00
11_K	156_A	0.670	1.00
155_E	159_H	0.666	1.00
166_G	170_T	0.665	1.00
11_K	14_V	0.665	1.00
203_D	211_L	0.664	1.00
44_N	159_H	0.659	1.00
138_D	167_H	0.658	1.00
9_N	14_V	0.657	1.00
196_D	203_D	0.654	1.00
69_L	72_Q	0.652	1.00
46_T	89_P	0.651	1.00
82_H	85_F	0.650	1.00
129_A	137_T	0.650	1.00
11_K	16_K	0.645	1.00
25_G	229_S	0.643	1.00
195_A	205_Q	0.642	1.00
172_E	180_D	0.641	1.00
71_A	75_I	0.640	1.00
60_I	70_D	0.639	1.00
215_R	238_D	0.636	1.00
65_I	77_A	0.632	1.00
63_Y	100_E	0.632	1.00
109_E	113_M	0.630	1.00
240_D	244_Q	0.630	1.00
186_A	213_R	0.629	1.00
35_L	78_V	0.626	1.00
141_L	147_V	0.624	1.00
186_A	202_F	0.623	1.00
195_A	199_L	0.616	1.00
25_G	85_F	0.614	1.00
95_F	98_E	0.613	1.00
230_V	239_M	0.612	1.00
44_N	47_I	0.611	1.00
198_I	202_F	0.610	1.00
33_D	122_Y	0.609	1.00
93_D	96_S	0.608	1.00
22_N	243_F	0.605	1.00
78_V	88_L	0.603	1.00
202_F	205_Q	0.600	1.00
103_T	106_R	0.599	1.00
4_R	145_R	0.598	1.00
3_H	32_H	0.598	1.00
83_E	86_D	0.597	1.00
108_R	139_N	0.596	1.00
223_A	230_V	0.593	1.00
26_A	243_F	0.593	1.00
67_T	70_D	0.590	1.00
71_A	76_D	0.590	1.00
43_G	91_H	0.587	1.00
107_G	136_L	0.586	1.00
39_L	136_L	0.584	1.00
39_L	111_L	0.582	1.00
116_D	119_H	0.578	1.00
42_Q	131_P	0.578	1.00
151_A	184_L	0.576	1.00
66_L	69_L	0.576	1.00
76_D	79_I	0.575	1.00
218_V	221_K	0.575	1.00
134_G	137_T	0.574	1.00
223_A	233_H	0.574	1.00
119_H	145_R	0.574	1.00
20_A	45_G	0.573	1.00
105_M	108_R	0.571	1.00
169_D	172_E	0.571	1.00
34_V	85_F	0.571	1.00
99_S	135_L	0.569	1.00
8_A	141_L	0.566	1.00
62_L	66_L	0.563	1.00
88_L	92_I	0.561	1.00
68_D	72_Q	0.560	1.00
223_A	228_T	0.559	1.00
183_G	211_L	0.559	1.00
135_L	138_D	0.559	1.00
65_I	68_D	0.557	1.00
183_G	209_L	0.556	1.00
219_G	237_T	0.555	1.00
64_D	68_D	0.554	1.00
70_D	77_A	0.552	1.00
163_I	166_G	0.551	1.00
8_A	147_V	0.549	1.00
126_I	250_L	0.545	1.00
194_E	197_R	0.545	1.00
31_G	84_E	0.542	1.00
75_I	80_R	0.541	1.00
23_V	246_I	0.540	1.00
239_M	243_F	0.539	1.00
76_D	80_R	0.539	1.00
119_H	125_I	0.539	1.00
115_L	143_A	0.539	1.00
28_A	34_V	0.538	1.00
34_V	123_D	0.537	1.00
111_L	115_L	0.537	1.00
46_T	91_H	0.532	1.00
25_G	83_E	0.531	1.00
96_S	100_E	0.529	1.00
221_K	224_W	0.525	1.00
155_E	225_A	0.525	1.00
190_E	218_V	0.525	1.00
222_R	233_H	0.524	1.00
148_L	182_I	0.524	1.00
76_D	81_S	0.523	1.00
25_G	28_A	0.523	1.00
21_I	36_F	0.519	1.00
23_V	148_L	0.519	1.00
106_R	113_M	0.517	1.00
48_G	224_W	0.516	1.00
196_D	202_F	0.516	1.00
22_N	230_V	0.515	1.00
221_K	225_A	0.515	1.00
72_Q	75_I	0.515	1.00
133_L	137_T	0.514	1.00
5_L	126_I	0.514	1.00
139_N	142_L	0.510	1.00
230_V	233_H	0.510	1.00
193_G	218_V	0.509	1.00
35_L	118_L	0.507	1.00
84_E	88_L	0.504	1.00
223_A	229_S	0.503	1.00
198_I	205_Q	0.502	1.00
86_D	121_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pfsA	1	0.9134	100	0.235	Contact Map
3pg5A	2	0.8858	100	0.268	Contact Map
1g3qA	1	0.9252	100	0.27	Contact Map
1hyqA	1	0.9094	100	0.272	Contact Map
1wcv1	2	0.9449	100	0.273	Contact Map
3ea0A	2	0.9252	100	0.276	Contact Map
4rz3A	2	0.9331	100	0.282	Contact Map
2ozeA	2	0.9803	100	0.289	Contact Map
3ez2A	2	0.9961	100	0.296	Contact Map
3ez9A	2	0.8346	100	0.297	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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