GREMLIN Database
RS17 - 30S ribosomal protein S17P
UniProt: O24786 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 109 (104)
Sequences: 367 (190)
Seq/√Len: 18.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
46_V69_P4.2081.00
72_A78_I3.7581.00
87_A101_V3.5941.00
44_T96_K3.4631.00
14_C22_H3.3721.00
70_A86_I2.7030.98
47_V86_I2.2090.93
21_F89_T2.0490.90
45_V72_A2.0350.90
3_I101_V1.9620.88
68_V86_I1.8040.83
48_E67_R1.7420.81
54_F59_D1.7360.81
8_T31_V1.6960.79
38_S88_E1.6860.79
22_H75_C1.6750.79
88_E97_S1.6380.77
37_A45_V1.5760.74
8_T11_E1.4910.70
45_V100_V1.4230.66
50_E65_R1.4220.66
14_C75_C1.4060.65
19_C22_H1.4040.65
33_E104_T1.3820.64
7_V25_L1.3650.63
85_S104_T1.2970.59
3_I23_G1.2780.57
47_V83_T1.2710.57
6_N30_Q1.2430.55
60_R81_G1.2390.55
18_D92_L1.2270.54
59_D63_K1.2160.54
40_D44_T1.2130.53
59_D102_E1.1770.51
47_V89_T1.1760.51
68_V80_V1.1670.51
36_V72_A1.1620.50
10_P19_C1.1560.50
25_L32_L1.1330.48
36_V45_V1.1200.48
39_T70_A1.0910.46
96_K101_V1.0720.45
35_E50_E1.0470.43
14_C19_C1.0250.42
60_R64_R0.9900.40
8_T24_N0.9890.40
67_R87_A0.9890.40
27_V99_V0.9880.40
18_D25_L0.9820.39
6_N63_K0.9740.39
32_L92_L0.9680.38
34_G71_H0.9670.38
14_C76_F0.9660.38
78_I96_K0.9660.38
48_E65_R0.9620.38
35_E42_E0.9610.38
33_E83_T0.9570.38
85_S102_E0.9390.37
7_V14_C0.9320.36
46_V100_V0.9290.36
41_M63_K0.9180.35
5_L103_I0.9160.35
39_T80_V0.9120.35
19_C75_C0.9080.35
25_L92_L0.9080.35
33_E37_A0.9070.35
39_T72_A0.9040.35
45_V70_A0.9040.35
6_N87_A0.9020.35
15_S40_D0.8770.33
66_S83_T0.8650.32
48_E60_R0.8610.32
93_S96_K0.8590.32
18_D71_H0.8530.32
10_P22_H0.8480.32
4_G20_P0.8470.31
16_D79_S0.8370.31
54_F61_Y0.8250.30
18_D24_N0.8200.30
23_G93_S0.8040.29
53_V62_M0.8020.29
11_E46_V0.7950.29
15_S22_H0.7910.29
63_K91_P0.7860.28
32_L86_I0.7820.28
69_P93_S0.7710.28
49_R89_T0.7650.27
60_R71_H0.7610.27
65_R87_A0.7520.27
57_K84_V0.7500.26
35_E83_T0.7460.26
25_L73_P0.7400.26
60_R93_S0.7360.26
47_V68_V0.7350.26
66_S86_I0.7240.25
28_R34_G0.7240.25
49_R60_R0.7140.25
32_L51_Y0.7010.24
3_I6_N0.6960.24
37_A68_V0.6910.24
33_E79_S0.6900.24
61_Y85_S0.6900.24
32_L43_K0.6890.24
72_A96_K0.6850.23
46_V97_S0.6850.23
7_V101_V0.6790.23
18_D21_F0.6780.23
16_D19_C0.6760.23
83_T104_T0.6710.23
39_T45_V0.6670.23
26_S53_V0.6660.23
64_R80_V0.6640.22
13_T76_F0.6590.22
42_E66_S0.6430.22
55_V62_M0.6310.21
47_V55_V0.6280.21
26_S30_Q0.6250.21
33_E80_V0.6250.21
2_A35_E0.6220.21
5_L101_V0.6120.20
10_P75_C0.6040.20
24_N83_T0.6000.20
5_L38_S0.5940.20
4_G49_R0.5930.20
12_G18_D0.5920.20
5_L87_A0.5870.19
21_F49_R0.5870.19
11_E95_T0.5860.19
30_Q63_K0.5830.19
71_H74_E0.5800.19
21_F30_Q0.5700.19
32_L65_R0.5660.19
6_N89_T0.5650.18
17_E40_D0.5650.18
43_K74_E0.5650.18
2_A72_A0.5640.18
90_R94_K0.5580.18
6_N55_V0.5580.18
31_V41_M0.5490.18
10_P49_R0.5480.18
74_E91_P0.5380.17
69_P77_D0.5370.17
49_R63_K0.5360.17
33_E85_S0.5360.17
89_T98_H0.5300.17
71_H81_G0.5200.17
37_A80_V0.5180.17
67_R79_S0.5170.17
89_T99_V0.5160.17
31_V87_A0.5140.17
7_V83_T0.5120.17
9_E21_F0.5110.17
86_I98_H0.5050.16
28_R94_K0.5030.16
32_L68_V0.5010.16
62_M90_R0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j20R 1 1 100 0.244 Contact Map
4w23L 1 1 100 0.25 Contact Map
3zeyE 1 1 100 0.252 Contact Map
3j60L 1 0.7431 100 0.256 Contact Map
3j7aV 1 1 100 0.258 Contact Map
4bpeQ 1 1 100 0.261 Contact Map
4ujpM 1 1 100 0.261 Contact Map
3bbnQ 1 0.7248 100 0.376 Contact Map
1qd7I 1 0.7431 99.9 0.517 Contact Map
4rb5Q 1 0.7431 99.9 0.518 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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