GREMLIN Database
F2Z5Y8 - Chemotaxis protein
UniProt: F2Z5Y8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 195 (186)
Sequences: 1135 (868)
Seq/√Len: 63.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
143_A147_D3.9131.00
103_S106_E3.5691.00
15_E18_R3.2581.00
66_P136_S3.2541.00
18_R41_T3.1051.00
6_D9_R2.8641.00
15_E22_S2.8491.00
15_E19_E2.8101.00
119_S123_D2.6421.00
15_E41_T2.5641.00
18_R22_S2.4691.00
60_Q78_L2.3931.00
64_S74_S2.3931.00
60_Q145_G2.2831.00
71_P191_M2.2531.00
122_I125_W2.1801.00
42_K165_D2.1121.00
62_G148_I2.1001.00
123_D127_N2.0861.00
63_V114_G2.0471.00
25_A188_F2.0441.00
112_E116_I2.0411.00
85_R102_Y2.0241.00
91_M113_V1.8921.00
19_E22_S1.8551.00
39_Q167_E1.8381.00
11_Q19_E1.8281.00
75_V118_T1.8031.00
73_G164_F1.7801.00
113_V162_M1.6890.99
26_E30_Q1.6880.99
11_Q15_E1.6870.99
11_Q22_S1.6490.99
122_I135_I1.6390.99
162_M168_L1.6360.99
19_E41_T1.6200.99
22_S41_T1.5990.99
160_I191_M1.5750.99
70_Q131_R1.5590.99
76_L151_H1.5440.99
112_E115_N1.5200.99
38_M41_T1.4530.98
34_V90_T1.4410.98
16_L187_A1.4340.98
43_I146_E1.4250.98
17_A164_F1.4160.98
82_E186_E1.4050.98
137_T166_A1.3890.97
120_G188_F1.3650.97
67_L162_M1.3280.97
144_S147_D1.3110.96
19_E128_V1.3020.96
117_M191_M1.3000.96
63_V110_I1.2970.96
120_G140_L1.2650.96
190_S193_N1.2610.95
152_C161_A1.2350.95
67_L73_G1.2310.95
52_G161_A1.2230.95
88_A106_E1.2040.94
62_G125_W1.1900.94
78_L90_T1.1890.94
117_M120_G1.1880.94
16_L179_I1.1870.94
8_R55_L1.1740.93
20_G124_G1.1670.93
111_R188_F1.1610.93
26_E124_G1.1610.93
31_L116_I1.1550.93
21_A38_M1.1520.93
168_L182_F1.1490.93
91_M109_A1.1430.92
169_H174_N1.1340.92
46_I68_K1.1330.92
61_V110_I1.1310.92
61_V84_A1.1160.91
6_D88_A1.1060.91
66_P74_S1.0930.91
40_I131_R1.0890.90
77_V177_A1.0890.90
57_A144_S1.0720.90
25_A36_T1.0660.89
30_Q193_N1.0580.89
105_M114_G1.0410.88
119_S162_M1.0350.88
121_F136_S1.0320.88
87_V113_V1.0320.88
31_L84_A1.0300.88
45_V146_E1.0210.87
115_N137_T1.0210.87
86_R175_V1.0140.87
108_S183_P1.0130.87
84_A161_A1.0070.87
47_D50_D0.9990.86
84_A143_A0.9900.86
61_V88_A0.9900.86
56_G146_E0.9820.85
78_L181_S0.9750.85
135_I166_A0.9730.85
36_T43_I0.9680.84
17_A20_G0.9650.84
111_R140_L0.9610.84
85_R89_G0.9610.84
35_E87_V0.9600.84
46_I50_D0.9550.84
89_G106_E0.9530.83
67_L179_I0.9410.83
170_A175_V0.9380.82
16_L62_G0.9330.82
34_V171_P0.9300.82
21_A122_I0.9180.81
29_S92_M0.9160.81
93_G103_S0.9130.81
79_F122_I0.9000.80
17_A102_Y0.8910.79
179_I183_P0.8760.78
33_G174_N0.8700.77
58_A80_D0.8680.77
55_L79_F0.8640.77
121_F177_A0.8500.76
158_H161_A0.8500.76
31_L179_I0.8490.76
86_R193_N0.8400.75
7_I189_V0.8280.74
11_Q18_R0.8220.73
109_A115_N0.8220.73
48_V166_A0.8200.73
83_S175_V0.8170.73
17_A121_F0.8160.73
78_L180_Y0.8090.72
77_V184_D0.8080.72
88_A109_A0.8060.72
20_G113_V0.8050.72
117_M180_Y0.8000.71
58_A146_E0.7970.71
157_E191_M0.7950.71
55_L81_D0.7940.71
79_F158_H0.7920.70
67_L181_S0.7890.70
88_A163_V0.7880.70
136_S141_I0.7860.70
35_E165_D0.7800.69
11_Q14_N0.7790.69
51_L110_I0.7780.69
21_A170_A0.7660.68
25_A41_T0.7660.68
117_M152_C0.7660.68
161_A170_A0.7620.67
20_G183_P0.7600.67
108_S121_F0.7560.67
85_R104_D0.7540.67
94_G103_S0.7530.67
73_G133_I0.7470.66
102_Y106_E0.7400.65
15_E26_E0.7320.64
161_A165_D0.7310.64
49_E126_A0.7310.64
23_T67_L0.7290.64
25_A121_F0.7280.64
112_E177_A0.7280.64
112_E137_T0.7230.63
123_D177_A0.7150.63
110_I164_F0.7140.62
65_V108_S0.7130.62
94_G134_D0.7130.62
90_T134_D0.7070.62
119_S129_L0.7060.62
29_S35_E0.7050.61
33_G150_S0.7040.61
89_G105_M0.6960.60
166_A177_A0.6930.60
95_I98_E0.6880.60
31_L37_Q0.6870.59
87_V116_I0.6830.59
131_R180_Y0.6810.59
82_E189_V0.6810.59
34_V170_A0.6780.58
71_P80_D0.6750.58
72_Y186_E0.6730.58
20_G62_G0.6730.58
123_D183_P0.6680.57
94_G190_S0.6640.57
22_S26_E0.6600.56
32_T79_F0.6570.56
64_S161_A0.6570.56
124_G177_A0.6550.56
22_S63_V0.6530.56
103_S193_N0.6510.55
65_V179_I0.6490.55
20_G145_G0.6470.55
47_D160_I0.6470.55
90_T126_A0.6430.54
82_E87_V0.6430.54
35_E75_V0.6420.54
75_V129_L0.6370.54
44_N54_H0.6360.54
11_Q41_T0.6350.54
50_D82_E0.6300.53
21_A143_A0.6300.53
73_G187_A0.6290.53
51_L90_T0.6280.53
107_R111_R0.6270.53
24_V149_A0.6270.53
33_G94_G0.6250.52
44_N165_D0.6240.52
118_T179_I0.6230.52
140_L186_E0.6220.52
27_N120_G0.6220.52
88_A92_M0.6210.52
72_Y76_L0.6200.52
33_G47_D0.6160.51
79_F177_A0.6140.51
13_V40_I0.6120.51
11_Q116_I0.6120.51
6_D132_T0.6100.51
107_R140_L0.6090.51
71_P131_R0.6030.50
85_R101_G0.6020.50
145_G149_A0.6000.49
76_L186_E0.5970.49
21_A25_A0.5960.49
6_D80_D0.5930.49
75_V122_I0.5900.48
95_I176_E0.5880.48
89_G99_G0.5860.48
44_N134_D0.5820.47
115_N122_I0.5800.47
23_T108_S0.5780.47
87_V178_K0.5760.47
36_T124_G0.5740.46
167_E172_D0.5730.46
47_D189_V0.5700.46
9_R192_I0.5680.46
44_N53_A0.5670.46
108_S166_A0.5660.46
57_A117_M0.5640.45
19_E69_E0.5580.45
54_H79_F0.5570.45
23_T26_E0.5560.44
34_V160_I0.5560.44
105_M108_S0.5560.44
65_V135_I0.5530.44
112_E184_D0.5530.44
65_V122_I0.5510.44
60_Q126_A0.5460.43
21_A121_F0.5460.43
148_I165_D0.5450.43
21_A166_A0.5410.43
156_G159_E0.5410.43
21_A183_P0.5400.43
9_R14_N0.5400.43
67_L72_Y0.5370.42
11_Q38_M0.5350.42
105_M116_I0.5340.42
114_G119_S0.5330.42
99_G103_S0.5320.42
65_V81_D0.5310.42
173_A186_E0.5300.41
9_R36_T0.5300.41
22_S29_S0.5290.41
84_A175_V0.5290.41
21_A80_D0.5280.41
98_E103_S0.5230.41
37_Q192_I0.5220.41
24_V137_T0.5170.40
48_V182_F0.5170.40
29_S48_V0.5150.40
83_S87_V0.5130.40
109_A183_P0.5120.39
64_S168_L0.5070.39
88_A117_M0.5070.39
80_D163_V0.5060.39
61_V78_L0.5060.39
85_R106_E0.5050.39
18_R36_T0.5020.38
72_Y184_D0.5020.38
49_E146_E0.5010.38
64_S149_A0.5010.38
47_D136_S0.5000.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3qtaA 2 0.9897 100 0.215 Contact Map
1xkrA 1 0.9949 100 0.291 Contact Map
4hynA 1 0.9795 100 0.361 Contact Map
4fhrA 1 0.9231 100 0.411 Contact Map
4gc8A 1 0.9282 100 0.429 Contact Map
3hm4A 2 0.7846 99.8 0.553 Contact Map
1squA 2 0.7897 99.8 0.556 Contact Map
3h2dA 2 0.7846 99.8 0.559 Contact Map
3hzhB 1 0.759 99.8 0.586 Contact Map
3uswA 1 0.6872 40.3 0.926 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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