F2Z5Y8 - HALSA - GREMLIN Contacts

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F2Z5Y8 - Chemotaxis protein

UniProt:	F2Z5Y8	Sequences: MSTMIDIRRLQTVNELAREGASTVAENMSQLTGVETQMQITKINVIDVEDLGAHLGAAKQVGVSVPLKEQPYGSVLVLFDDESARRVAGTMMGGIESEGGGYSDMERSAIREVGNIMTSGFIDGWANVLGRTIDISTPQLIRASGEDIASHCVDPGEHEIAMVFDAELHAPDANVEAKIYSFPDIEAFVSMINSI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	195 (186)
Sequences:	1135 (868)
Seq/√Len:	63.6

BACSU - CHEC FLIY
HALSA - F2Z5Y8 Q9HPJ6 Q9HQW8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
143_A	147_D	3.913	1.00
103_S	106_E	3.569	1.00
15_E	18_R	3.258	1.00
66_P	136_S	3.254	1.00
18_R	41_T	3.105	1.00
6_D	9_R	2.864	1.00
15_E	22_S	2.849	1.00
15_E	19_E	2.810	1.00
119_S	123_D	2.642	1.00
15_E	41_T	2.564	1.00
18_R	22_S	2.469	1.00
60_Q	78_L	2.393	1.00
64_S	74_S	2.393	1.00
60_Q	145_G	2.283	1.00
71_P	191_M	2.253	1.00
122_I	125_W	2.180	1.00
42_K	165_D	2.112	1.00
62_G	148_I	2.100	1.00
123_D	127_N	2.086	1.00
63_V	114_G	2.047	1.00
25_A	188_F	2.044	1.00
112_E	116_I	2.041	1.00
85_R	102_Y	2.024	1.00
91_M	113_V	1.892	1.00
19_E	22_S	1.855	1.00
39_Q	167_E	1.838	1.00
11_Q	19_E	1.828	1.00
75_V	118_T	1.803	1.00
73_G	164_F	1.780	1.00
113_V	162_M	1.689	0.99
26_E	30_Q	1.688	0.99
11_Q	15_E	1.687	0.99
11_Q	22_S	1.649	0.99
122_I	135_I	1.639	0.99
162_M	168_L	1.636	0.99
19_E	41_T	1.620	0.99
22_S	41_T	1.599	0.99
160_I	191_M	1.575	0.99
70_Q	131_R	1.559	0.99
76_L	151_H	1.544	0.99
112_E	115_N	1.520	0.99
38_M	41_T	1.453	0.98
34_V	90_T	1.441	0.98
16_L	187_A	1.434	0.98
43_I	146_E	1.425	0.98
17_A	164_F	1.416	0.98
82_E	186_E	1.405	0.98
137_T	166_A	1.389	0.97
120_G	188_F	1.365	0.97
67_L	162_M	1.328	0.97
144_S	147_D	1.311	0.96
19_E	128_V	1.302	0.96
117_M	191_M	1.300	0.96
63_V	110_I	1.297	0.96
120_G	140_L	1.265	0.96
190_S	193_N	1.261	0.95
152_C	161_A	1.235	0.95
67_L	73_G	1.231	0.95
52_G	161_A	1.223	0.95
88_A	106_E	1.204	0.94
62_G	125_W	1.190	0.94
78_L	90_T	1.189	0.94
117_M	120_G	1.188	0.94
16_L	179_I	1.187	0.94
8_R	55_L	1.174	0.93
20_G	124_G	1.167	0.93
111_R	188_F	1.161	0.93
26_E	124_G	1.161	0.93
31_L	116_I	1.155	0.93
21_A	38_M	1.152	0.93
168_L	182_F	1.149	0.93
91_M	109_A	1.143	0.92
169_H	174_N	1.134	0.92
46_I	68_K	1.133	0.92
61_V	110_I	1.131	0.92
61_V	84_A	1.116	0.91
6_D	88_A	1.106	0.91
66_P	74_S	1.093	0.91
40_I	131_R	1.089	0.90
77_V	177_A	1.089	0.90
57_A	144_S	1.072	0.90
25_A	36_T	1.066	0.89
30_Q	193_N	1.058	0.89
105_M	114_G	1.041	0.88
119_S	162_M	1.035	0.88
121_F	136_S	1.032	0.88
87_V	113_V	1.032	0.88
31_L	84_A	1.030	0.88
45_V	146_E	1.021	0.87
115_N	137_T	1.021	0.87
86_R	175_V	1.014	0.87
108_S	183_P	1.013	0.87
84_A	161_A	1.007	0.87
47_D	50_D	0.999	0.86
84_A	143_A	0.990	0.86
61_V	88_A	0.990	0.86
56_G	146_E	0.982	0.85
78_L	181_S	0.975	0.85
135_I	166_A	0.973	0.85
36_T	43_I	0.968	0.84
17_A	20_G	0.965	0.84
111_R	140_L	0.961	0.84
85_R	89_G	0.961	0.84
35_E	87_V	0.960	0.84
46_I	50_D	0.955	0.84
89_G	106_E	0.953	0.83
67_L	179_I	0.941	0.83
170_A	175_V	0.938	0.82
16_L	62_G	0.933	0.82
34_V	171_P	0.930	0.82
21_A	122_I	0.918	0.81
29_S	92_M	0.916	0.81
93_G	103_S	0.913	0.81
79_F	122_I	0.900	0.80
17_A	102_Y	0.891	0.79
179_I	183_P	0.876	0.78
33_G	174_N	0.870	0.77
58_A	80_D	0.868	0.77
55_L	79_F	0.864	0.77
121_F	177_A	0.850	0.76
158_H	161_A	0.850	0.76
31_L	179_I	0.849	0.76
86_R	193_N	0.840	0.75
7_I	189_V	0.828	0.74
11_Q	18_R	0.822	0.73
109_A	115_N	0.822	0.73
48_V	166_A	0.820	0.73
83_S	175_V	0.817	0.73
17_A	121_F	0.816	0.73
78_L	180_Y	0.809	0.72
77_V	184_D	0.808	0.72
88_A	109_A	0.806	0.72
20_G	113_V	0.805	0.72
117_M	180_Y	0.800	0.71
58_A	146_E	0.797	0.71
157_E	191_M	0.795	0.71
55_L	81_D	0.794	0.71
79_F	158_H	0.792	0.70
67_L	181_S	0.789	0.70
88_A	163_V	0.788	0.70
136_S	141_I	0.786	0.70
35_E	165_D	0.780	0.69
11_Q	14_N	0.779	0.69
51_L	110_I	0.778	0.69
21_A	170_A	0.766	0.68
25_A	41_T	0.766	0.68
117_M	152_C	0.766	0.68
161_A	170_A	0.762	0.67
20_G	183_P	0.760	0.67
108_S	121_F	0.756	0.67
85_R	104_D	0.754	0.67
94_G	103_S	0.753	0.67
73_G	133_I	0.747	0.66
102_Y	106_E	0.740	0.65
15_E	26_E	0.732	0.64
161_A	165_D	0.731	0.64
49_E	126_A	0.731	0.64
23_T	67_L	0.729	0.64
25_A	121_F	0.728	0.64
112_E	177_A	0.728	0.64
112_E	137_T	0.723	0.63
123_D	177_A	0.715	0.63
110_I	164_F	0.714	0.62
65_V	108_S	0.713	0.62
94_G	134_D	0.713	0.62
90_T	134_D	0.707	0.62
119_S	129_L	0.706	0.62
29_S	35_E	0.705	0.61
33_G	150_S	0.704	0.61
89_G	105_M	0.696	0.60
166_A	177_A	0.693	0.60
95_I	98_E	0.688	0.60
31_L	37_Q	0.687	0.59
87_V	116_I	0.683	0.59
131_R	180_Y	0.681	0.59
82_E	189_V	0.681	0.59
34_V	170_A	0.678	0.58
71_P	80_D	0.675	0.58
72_Y	186_E	0.673	0.58
20_G	62_G	0.673	0.58
123_D	183_P	0.668	0.57
94_G	190_S	0.664	0.57
22_S	26_E	0.660	0.56
32_T	79_F	0.657	0.56
64_S	161_A	0.657	0.56
124_G	177_A	0.655	0.56
22_S	63_V	0.653	0.56
103_S	193_N	0.651	0.55
65_V	179_I	0.649	0.55
20_G	145_G	0.647	0.55
47_D	160_I	0.647	0.55
90_T	126_A	0.643	0.54
82_E	87_V	0.643	0.54
35_E	75_V	0.642	0.54
75_V	129_L	0.637	0.54
44_N	54_H	0.636	0.54
11_Q	41_T	0.635	0.54
50_D	82_E	0.630	0.53
21_A	143_A	0.630	0.53
73_G	187_A	0.629	0.53
51_L	90_T	0.628	0.53
107_R	111_R	0.627	0.53
24_V	149_A	0.627	0.53
33_G	94_G	0.625	0.52
44_N	165_D	0.624	0.52
118_T	179_I	0.623	0.52
140_L	186_E	0.622	0.52
27_N	120_G	0.622	0.52
88_A	92_M	0.621	0.52
72_Y	76_L	0.620	0.52
33_G	47_D	0.616	0.51
79_F	177_A	0.614	0.51
13_V	40_I	0.612	0.51
11_Q	116_I	0.612	0.51
6_D	132_T	0.610	0.51
107_R	140_L	0.609	0.51
71_P	131_R	0.603	0.50
85_R	101_G	0.602	0.50
145_G	149_A	0.600	0.49
76_L	186_E	0.597	0.49
21_A	25_A	0.596	0.49
6_D	80_D	0.593	0.49
75_V	122_I	0.590	0.48
95_I	176_E	0.588	0.48
89_G	99_G	0.586	0.48
44_N	134_D	0.582	0.47
115_N	122_I	0.580	0.47
23_T	108_S	0.578	0.47
87_V	178_K	0.576	0.47
36_T	124_G	0.574	0.46
167_E	172_D	0.573	0.46
47_D	189_V	0.570	0.46
9_R	192_I	0.568	0.46
44_N	53_A	0.567	0.46
108_S	166_A	0.566	0.46
57_A	117_M	0.564	0.45
19_E	69_E	0.558	0.45
54_H	79_F	0.557	0.45
23_T	26_E	0.556	0.44
34_V	160_I	0.556	0.44
105_M	108_S	0.556	0.44
65_V	135_I	0.553	0.44
112_E	184_D	0.553	0.44
65_V	122_I	0.551	0.44
60_Q	126_A	0.546	0.43
21_A	121_F	0.546	0.43
148_I	165_D	0.545	0.43
21_A	166_A	0.541	0.43
156_G	159_E	0.541	0.43
21_A	183_P	0.540	0.43
9_R	14_N	0.540	0.43
67_L	72_Y	0.537	0.42
11_Q	38_M	0.535	0.42
105_M	116_I	0.534	0.42
114_G	119_S	0.533	0.42
99_G	103_S	0.532	0.42
65_V	81_D	0.531	0.42
173_A	186_E	0.530	0.41
9_R	36_T	0.530	0.41
22_S	29_S	0.529	0.41
84_A	175_V	0.529	0.41
21_A	80_D	0.528	0.41
98_E	103_S	0.523	0.41
37_Q	192_I	0.522	0.41
24_V	137_T	0.517	0.40
48_V	182_F	0.517	0.40
29_S	48_V	0.515	0.40
83_S	87_V	0.513	0.40
109_A	183_P	0.512	0.39
64_S	168_L	0.507	0.39
88_A	117_M	0.507	0.39
80_D	163_V	0.506	0.39
61_V	78_L	0.506	0.39
85_R	106_E	0.505	0.39
18_R	36_T	0.502	0.38
72_Y	184_D	0.502	0.38
49_E	146_E	0.501	0.38
64_S	149_A	0.501	0.38
47_D	136_S	0.500	0.38

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qtaA	2	0.9897	100	0.215	Contact Map
1xkrA	1	0.9949	100	0.291	Contact Map
4hynA	1	0.9795	100	0.361	Contact Map
4fhrA	1	0.9231	100	0.411	Contact Map
4gc8A	1	0.9282	100	0.429	Contact Map
3hm4A	2	0.7846	99.8	0.553	Contact Map
1squA	2	0.7897	99.8	0.556	Contact Map
3h2dA	2	0.7846	99.8	0.559	Contact Map
3hzhB	1	0.759	99.8	0.586	Contact Map
3uswA	1	0.6872	40.3	0.926	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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