GREMLIN Database
YKGN - Putative transposase YkgN
UniProt: Q79E92 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14418
Length: 112 (89)
Sequences: 1601 (1114)
Seq/√Len: 118.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
69_E74_T5.3841.00
62_E67_Q4.9761.00
70_L73_V4.9541.00
62_E65_R2.6251.00
59_A63_I2.3831.00
14_A32_L2.2441.00
14_A39_L2.0601.00
8_E12_T1.9611.00
73_V77_R1.8021.00
37_H40_Y1.7741.00
16_K20_D1.7591.00
41_A45_K1.7471.00
26_A30_T1.7331.00
27_S31_R1.6041.00
23_Y28_V1.5221.00
25_V40_Y1.5121.00
70_L74_T1.4521.00
84_A88_I1.4351.00
63_I67_Q1.3361.00
58_D61_A1.3291.00
43_I47_G1.2801.00
69_E72_R1.2761.00
15_V43_I1.2340.99
23_Y27_S1.2330.99
38_S41_A1.2310.99
63_I66_L1.2190.99
19_V47_G1.2070.99
65_R69_E1.1930.99
17_Q28_V1.1800.99
40_Y44_K1.1630.99
83_A87_S1.1550.99
23_Y31_R1.1550.99
18_V43_I1.1500.99
71_K78_D1.1350.99
25_V43_I1.0940.98
19_V43_I1.0930.98
24_S27_S1.0780.98
19_V46_Y1.0610.98
63_I70_L1.0590.98
28_V31_R1.0570.98
61_A65_R1.0570.98
13_E16_K1.0490.98
51_S56_Q1.0360.98
6_Y11_K1.0240.98
55_E60_Q1.0130.97
86_D90_Q0.9890.97
18_V29_A0.9870.97
18_V28_V0.9800.97
35_T38_S0.9660.97
83_A88_I0.9530.96
61_A64_R0.9480.96
71_K75_D0.9210.96
50_S53_N0.9190.95
84_A87_S0.9070.95
79_I83_A0.8980.95
7_P13_E0.8930.95
85_V88_I0.8830.94
81_K90_Q0.8750.94
82_K85_V0.8690.94
71_K74_T0.8590.94
66_L70_L0.8570.93
12_T16_K0.8140.92
6_Y10_F0.7900.90
49_D54_K0.7810.90
43_I46_Y0.7760.90
18_V25_V0.7730.89
17_Q32_L0.7630.89
28_V45_K0.7540.88
51_S54_K0.7510.88
55_E64_R0.7440.87
85_V89_C0.7400.87
41_A44_K0.7390.87
64_R67_Q0.7180.86
45_K57_S0.7140.85
50_S54_K0.7100.85
72_R75_D0.7090.85
57_S60_Q0.7010.84
10_F76_E0.7000.84
11_K38_S0.6960.84
58_D63_I0.6940.84
12_T46_Y0.6910.83
17_Q31_R0.6900.83
83_A90_Q0.6840.83
72_R76_E0.6830.83
55_E59_A0.6800.82
76_E80_L0.6720.82
9_E13_E0.6670.81
26_A40_Y0.6610.81
21_L28_V0.6550.80
11_K15_V0.6500.79
75_D82_K0.6480.79
81_K86_D0.6390.78
10_F32_L0.6230.77
17_Q21_L0.6220.76
83_A86_D0.6200.76
48_P53_N0.6200.76
84_A91_C0.6180.76
74_T77_R0.6180.76
44_K48_P0.6050.74
14_A17_Q0.5990.74
36_T40_Y0.5910.73
70_L77_R0.5850.72
40_Y47_G0.5840.72
56_Q64_R0.5840.72
3_G37_H0.5760.71
24_S34_I0.5700.70
82_K86_D0.5630.69
87_S90_Q0.5610.69
25_V39_L0.5580.68
32_L39_L0.5540.68
78_D82_K0.5530.68
85_V91_C0.5530.68
75_D85_V0.5510.67
60_Q63_I0.5440.66
54_K64_R0.5410.66
77_R91_C0.5370.65
15_V46_Y0.5370.65
49_D57_S0.5370.65
13_E17_Q0.5360.65
6_Y35_T0.5200.63
19_V50_S0.5200.63
18_V22_G0.5180.63
56_Q60_Q0.5170.63
56_Q59_A0.5170.63
47_G53_N0.5150.62
38_S43_I0.5090.61
55_E63_I0.5080.61
77_R80_L0.5080.61
6_Y14_A0.5040.61
50_S56_Q0.5040.61
75_D79_I0.5040.61
77_R84_A0.5020.60
61_A68_K0.5000.60
50_S57_S0.5000.60
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2rn7A 1 0.875 99.8 0.379 Contact Map
2jn6A 1 0.8214 99.7 0.458 Contact Map
1hlvA 1 0.9018 99.1 0.614 Contact Map
2elhA 1 0.625 98.8 0.655 Contact Map
2oa4A 1 0.6518 98.8 0.663 Contact Map
2ao9A 7 0.875 98.6 0.68 Contact Map
2gloA 1 0.5 98.5 0.688 Contact Map
1pdnC 1 0.9107 98.5 0.69 Contact Map
2k27A 1 0.9643 98.5 0.69 Contact Map
4dyqA 5 0.8125 98.5 0.691 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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