GREMLIN Database
COPA - Copper-exporting P-type ATPase A
UniProt: Q59385 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13246
Length: 834 (710)
Sequences: 9816 (6485)
Seq/√Len: 243.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
677_P681_N4.7341.00
227_L264_W4.1811.00
668_R691_E4.0291.00
360_E402_R3.8761.00
366_A399_V3.7511.00
556_L593_G3.7131.00
704_A707_H3.6071.00
584_R592_S3.5411.00
598_H638_D3.5361.00
518_D713_R3.2941.00
637_V642_V3.2631.00
589_L610_E3.1851.00
709_Q730_Q3.1201.00
700_G703_E3.1021.00
677_P695_G3.0981.00
517_L716_A3.0761.00
537_A630_A3.0531.00
346_L400_L3.0471.00
654_D756_S3.0441.00
329_T334_K3.0011.00
582_G594_E2.9741.00
363_Q400_L2.9361.00
324_T335_S2.8811.00
673_T680_A2.8781.00
346_L362_T2.8551.00
326_R335_S2.7951.00
106_S160_G2.7801.00
555_A578_P2.6141.00
549_A643_A2.5301.00
327_L334_K2.5291.00
663_H690_D2.5281.00
366_A394_V2.5231.00
546_E575_M2.5061.00
684_A692_V2.4541.00
706_K730_Q2.4531.00
535_V571_K2.4461.00
328_V400_L2.4451.00
355_V368_L2.4111.00
357_V403_A2.3861.00
346_L402_R2.3861.00
388_V401_F2.3821.00
681_N685_K2.3731.00
571_K575_M2.3451.00
716_A735_I2.3301.00
592_S599_A2.3221.00
668_R713_R2.3101.00
693_I704_A2.3081.00
598_H637_V2.3001.00
326_R353_D2.3001.00
196_G294_G2.2911.00
271_N286_Y2.2901.00
601_L611_Q2.2891.00
656_V660_Q2.2711.00
586_L607_L2.2231.00
535_V645_L2.1991.00
329_T332_G2.1981.00
621_E624_A2.1891.00
530_E650_P2.1831.00
665_A765_A2.1731.00
530_E653_S2.1211.00
498_A766_I2.1081.00
600_L637_V2.0871.00
707_H711_E2.0871.00
362_T402_R2.0661.00
341_V357_V2.0271.00
361_I399_V2.0251.00
552_L600_L2.0251.00
602_L635_L2.0251.00
528_L687_A2.0241.00
608_L636_A2.0231.00
146_S149_D1.9481.00
383_G386_D1.9471.00
521_V705_I1.9401.00
622_I634_L1.9371.00
261_G265_L1.9301.00
100_S142_M1.9251.00
452_A471_A1.9241.00
235_G239_R1.8951.00
239_R243_K1.8861.00
451_S470_I1.8841.00
779_L783_I1.8591.00
663_H669_L1.8421.00
114_V134_L1.8271.00
152_Q156_K1.8221.00
155_E160_G1.8131.00
657_A758_M1.8131.00
545_D548_Q1.8121.00
518_D714_Q1.8101.00
773_N826_R1.8071.00
192_A233_A1.8011.00
658_A761_A1.8001.00
632_P644_L1.7981.00
660_Q664_K1.7901.00
238_Y261_G1.7851.00
709_Q732_D1.7791.00
703_E706_K1.7711.00
681_N692_V1.7691.00
519_T670_V1.7471.00
341_V347_L1.7461.00
417_R421_Q1.7311.00
633_V647_V1.7301.00
327_L336_V1.7271.00
672_L704_A1.7261.00
328_V333_E1.7171.00
594_E599_A1.7131.00
651_L687_A1.7101.00
446_V450_V1.7101.00
670_V691_E1.7041.00
553_A635_L1.7031.00
739_G755_H1.7021.00
129_Q142_M1.7021.00
634_L641_A1.6921.00
435_K439_V1.6911.00
521_V708_L1.6901.00
333_E348_R1.6881.00
554_A572_A1.6761.00
151_V161_A1.6621.00
521_V672_L1.6481.00
193_L294_G1.6451.00
536_V630_A1.6431.00
661_R765_A1.6431.00
223_G268_M1.6381.00
188_Q236_H1.6291.00
571_K574_D1.6281.00
519_T713_R1.6171.00
359_G401_F1.6161.00
373_L389_H1.6151.00
702_A730_Q1.6101.00
635_L643_A1.6101.00
624_A628_Q1.6051.00
329_T345_M1.5981.00
348_R400_L1.5921.00
566_R570_D1.5851.00
706_K710_S1.5801.00
110_C113_C1.5771.00
671_M680_A1.5771.00
360_E404_S1.5761.00
530_E534_Q1.5691.00
656_V686_E1.5651.00
592_S601_L1.5571.00
794_G802_T1.5531.00
693_I707_H1.5511.00
659_L669_L1.5501.00
327_L345_M1.5501.00
608_L613_V1.5421.00
360_E385_G1.5411.00
454_I458_F1.5391.00
403_A406_V1.5371.00
604_N607_L1.5291.00
544_V642_V1.5131.00
230_M238_Y1.5121.00
497_R501_F1.5111.00
657_A661_R1.5111.00
494_G770_T1.5111.00
548_Q551_R1.5061.00
551_R596_E1.5051.00
257_A261_G1.5041.00
361_I368_L1.4991.00
501_F762_D1.4991.00
258_L445_V1.4931.00
586_L592_S1.4931.00
344_G402_R1.4911.00
561_S585_T1.4871.00
365_E381_Q1.4841.00
520_V716_A1.4841.00
200_M291_M1.4831.00
706_K709_Q1.4731.00
365_E383_G1.4591.00
347_L401_F1.4571.00
326_R333_E1.4541.00
605_Q609_N1.4451.00
387_S404_S1.4431.00
568_I645_L1.4301.00
369_D395_Q1.4301.00
516_T714_Q1.4261.00
447_I793_A1.4121.00
556_L591_V1.4091.00
654_D758_M1.4081.00
773_N824_A1.4061.00
459_G463_Q1.4051.00
551_R578_P1.4041.00
101_Q143_G1.4031.00
668_R690_D1.4001.00
349_L401_F1.3991.00
452_A456_Y1.3961.00
625_Q646_A1.3931.00
149_D152_Q1.3891.00
522_F528_L1.3871.00
367_W381_Q1.3821.00
583_F591_V1.3791.00
557_E565_A1.3711.00
627_S678_T1.3711.00
601_L636_A1.3671.00
754_R759_G1.3621.00
189_A298_L1.3591.00
601_L607_L1.3571.00
121_L139_A1.3571.00
490_S824_A1.3511.00
387_S405_A1.3501.00
528_L651_L1.3491.00
605_Q634_L1.3471.00
456_Y464_I1.3461.00
460_P463_Q1.3431.00
600_L642_V1.3421.00
368_L399_V1.3401.00
536_V648_R1.3391.00
370_E382_K1.3351.00
578_P596_E1.3221.00
238_Y257_A1.3181.00
497_R500_E1.3161.00
398_S559_G1.3161.00
122_Q129_Q1.3141.00
673_T694_A1.3131.00
555_A577_L1.3111.00
534_Q570_D1.3091.00
544_V549_A1.3041.00
547_A575_M1.3031.00
128_T142_M1.3021.00
556_L600_L1.2981.00
229_V290_A1.2971.00
348_R398_S1.2961.00
118_Q122_Q1.2941.00
735_I760_V1.2841.00
534_Q650_P1.2791.00
703_E707_H1.2781.00
691_E711_E1.2771.00
581_N594_E1.2751.00
580_V593_G1.2641.00
153_A157_A1.2571.00
121_L130_A1.2521.00
665_A768_R1.2511.00
124_V153_A1.2511.00
514_A733_V1.2501.00
541_F618_I1.2441.00
325_A356_P1.2421.00
540_T643_A1.2411.00
361_I364_G1.2311.00
407_G410_T1.2291.00
328_V348_R1.2281.00
450_V454_I1.2261.00
122_Q130_A1.2191.00
522_F669_L1.2161.00
360_E387_S1.2151.00
102_Q138_T1.2101.00
542_A640_K1.2081.00
152_Q155_E1.2061.00
132_V139_A1.2021.00
595_A600_L1.2001.00
539_K621_E1.1941.00
100_S140_L1.1921.00
630_A646_A1.1921.00
776_Q823_N1.1911.00
151_V155_E1.1911.00
347_L403_A1.1901.00
586_L589_L1.1861.00
531_G649_D1.1861.00
589_L697_L1.1861.00
337_P340_E1.1851.00
106_S162_E1.1831.00
533_P564_L1.1741.00
555_A580_V1.1721.00
535_V647_V1.1711.00
600_L635_L1.1641.00
127_V150_L1.1631.00
540_T549_A1.1621.00
613_V641_A1.1621.00
326_R350_T1.1581.00
580_V595_A1.1581.00
194_A198_P1.1571.00
618_I641_A1.1561.00
613_V636_A1.1541.00
680_A692_V1.1531.00
538_V571_K1.1521.00
696_V700_G1.1511.00
189_A193_L1.1491.00
505_V750_I1.1481.00
121_L150_L1.1471.00
558_Q573_G1.1431.00
699_D703_E1.1421.00
242_W246_L1.1411.00
230_M289_S1.1401.00
124_V145_A1.1381.00
388_V399_V1.1371.00
490_S773_N1.1371.00
654_D658_A1.1341.00
539_K625_Q1.1331.00
619_E623_T1.1321.00
592_S611_Q1.1301.00
230_M261_G1.1251.00
729_A747_T1.1221.00
104_L164_I1.1171.00
363_Q384_E1.1141.00
439_V443_V1.1131.00
515_S771_L1.1101.00
794_G803_L1.1091.00
551_R555_A1.1091.00
316_K500_E1.1021.00
553_A645_L1.1001.00
570_D573_G1.1001.00
184_R188_Q1.0981.00
328_V346_L1.0971.00
661_R665_A1.0961.00
771_L775_K1.0941.00
128_T144_S1.0941.00
623_T627_S1.0921.00
549_A635_L1.0881.00
234_G293_I1.0871.00
327_L347_L1.0871.00
102_Q140_L1.0851.00
651_L683_I1.0841.00
513_R714_Q1.0831.00
672_L696_V1.0821.00
589_L606_A1.0741.00
661_R664_K1.0721.00
553_A602_L1.0711.00
601_L613_V1.0701.00
183_K187_W1.0671.00
105_L108_M1.0611.00
554_A577_L1.0591.00
445_V449_L1.0591.00
361_I386_D1.0581.00
581_N597_G1.0571.00
456_Y467_T1.0571.00
336_V340_E1.0571.00
190_I194_A1.0491.00
305_R309_R1.0471.00
580_V583_F1.0461.00
707_H710_S1.0431.00
514_A764_L1.0431.00
769_A772_H1.0421.00
677_P694_A1.0421.00
603_G607_L1.0411.00
138_T420_R1.0401.00
514_A763_A1.0371.00
657_A660_Q1.0341.00
513_R516_T1.0331.00
105_L139_A1.0321.00
556_L602_L1.0321.00
676_N679_T1.0281.00
115_T119_N1.0271.00
372_M392_T1.0261.00
223_G264_W1.0241.00
351_T366_A1.0211.00
810_G814_A1.0171.00
103_L151_V1.0161.00
538_V645_L1.0141.00
196_G229_V1.0141.00
453_A457_F1.0141.00
661_R758_M1.0131.00
347_L357_V1.0131.00
120_A157_A1.0121.00
665_A764_L1.0121.00
264_W268_M1.0091.00
351_T585_T1.0061.00
187_W191_V1.0051.00
316_K743_V1.0001.00
709_Q715_V1.0001.00
414_R417_R0.9991.00
667_Y764_L0.9971.00
343_P406_V0.9961.00
528_L671_M0.9941.00
564_L647_V0.9931.00
601_L608_L0.9921.00
823_N826_R0.9921.00
351_T394_V0.9901.00
532_K570_D0.9891.00
219_W284_L0.9881.00
121_L124_V0.9861.00
625_Q630_A0.9851.00
520_V718_V0.9831.00
541_F641_A0.9821.00
114_V117_V0.9811.00
189_A301_M0.9801.00
250_A254_T0.9791.00
520_V667_Y0.9731.00
714_Q732_D0.9731.00
230_M260_T0.9721.00
670_V704_A0.9711.00
537_A646_A0.9711.00
338_L341_V0.9701.00
548_Q598_H0.9671.00
199_V290_A0.9621.00
554_A569_L0.9601.00
103_L161_A0.9601.00
350_T353_D0.9601.00
660_Q663_H0.9581.00
637_V640_K0.9571.00
540_T543_D0.9561.00
101_Q147_P0.9541.00
228_A232_F0.9521.00
199_V226_T0.9511.00
570_D574_D0.9481.00
693_I696_V0.9471.00
335_S353_D0.9461.00
606_A695_G0.9431.00
620_A623_T0.9421.00
605_Q619_E0.9401.00
186_R190_I0.9391.00
773_N776_Q0.9391.00
550_L571_K0.9381.00
818_I822_S0.9381.00
464_I468_L0.9361.00
145_A149_D0.9351.00
671_M689_I0.9331.00
466_Y470_I0.9321.00
470_I473_T0.9321.00
659_L663_H0.9311.00
513_R732_D0.9301.00
359_G388_V0.9301.00
661_R761_A0.9301.00
244_S251_T0.9301.00
519_T668_R0.9281.00
528_L659_L0.9271.00
118_Q426_K0.9251.00
117_V157_A0.9241.00
507_D749_A0.9231.00
517_L714_Q0.9231.00
676_N695_G0.9211.00
260_T293_I0.9201.00
677_P692_V0.9201.00
218_L222_I0.9201.00
219_W271_N0.9191.00
764_L768_R0.9181.00
477_I788_G0.9181.00
355_V388_V0.9171.00
759_G762_D0.9161.00
351_T561_S0.9151.00
788_G808_V0.9141.00
365_E582_G0.9121.00
665_A761_A0.9091.00
292_I810_G0.9071.00
414_R699_D0.9071.00
536_V646_A0.9071.00
204_M207_D0.9071.00
463_Q466_Y0.9051.00
310_S496_G0.9041.00
702_A706_K0.9011.00
639_G642_V0.8991.00
621_E625_Q0.8981.00
368_L388_V0.8981.00
356_P401_F0.8971.00
405_A409_H0.8941.00
651_L656_V0.8931.00
183_K186_R0.8901.00
238_Y260_T0.8881.00
444_V789_I0.8871.00
244_S254_T0.8861.00
342_Q345_M0.8851.00
684_A689_I0.8851.00
349_L355_V0.8841.00
718_V760_V0.8841.00
522_F760_V0.8821.00
203_G222_I0.8821.00
736_A740_G0.8821.00
672_L693_I0.8810.99
451_S474_V0.8790.99
154_V161_A0.8760.99
695_G700_G0.8760.99
124_V150_L0.8750.99
191_V233_A0.8720.99
534_Q574_D0.8720.99
556_L635_L0.8710.99
329_T336_V0.8650.99
655_S659_L0.8640.99
148_Q152_Q0.8630.99
203_G206_G0.8630.99
622_I626_A0.8630.99
540_T546_E0.8620.99
241_A250_A0.8620.99
624_A627_S0.8610.99
552_L637_V0.8560.99
367_W396_D0.8560.99
515_S767_S0.8550.99
347_L356_P0.8540.99
226_T290_A0.8540.99
609_N619_E0.8530.99
182_M186_R0.8530.99
365_E384_E0.8520.99
105_L161_A0.8520.99
673_T692_V0.8520.99
750_I763_A0.8510.99
390_A410_T0.8510.99
151_V163_A0.8500.99
608_L611_Q0.8500.99
209_M213_A0.8500.99
561_S583_F0.8490.99
355_V399_V0.8490.99
233_A297_N0.8480.99
395_Q566_R0.8450.99
361_I366_A0.8440.99
104_L162_E0.8440.99
538_V550_L0.8430.99
522_F662_L0.8430.99
349_L356_P0.8430.99
188_Q235_G0.8420.99
312_K315_E0.8410.99
341_V403_A0.8410.99
537_A546_E0.8390.99
151_V160_G0.8350.99
120_A124_V0.8340.99
601_L639_G0.8330.99
622_I632_P0.8310.99
514_A750_I0.8300.99
521_V696_V0.8300.99
769_A773_N0.8290.99
555_A579_Q0.8270.99
405_A414_R0.8260.99
815_L819_T0.8260.99
220_L272_L0.8260.99
199_V203_G0.8250.99
736_A748_A0.8250.99
594_E597_G0.8220.99
541_F544_V0.8160.99
628_Q686_E0.8150.99
210_M213_A0.8130.99
548_Q552_L0.8130.99
467_T471_A0.8120.99
537_A625_Q0.8120.99
406_V410_T0.8120.99
234_G260_T0.8120.99
661_R762_D0.8110.99
553_A568_I0.8110.99
188_Q192_A0.8110.99
783_I787_I0.8110.99
347_L359_G0.8100.99
130_A139_A0.8100.99
309_R312_K0.8100.99
138_T164_I0.8090.99
452_A467_T0.8070.99
620_A624_A0.8050.99
509_D513_R0.8050.99
220_L224_L0.8050.99
186_R301_M0.8050.99
536_V625_Q0.8030.99
355_V401_F0.8020.99
139_A154_V0.8010.99
120_A153_A0.8010.99
520_V669_L0.7990.99
605_Q626_A0.7990.99
389_H392_T0.7990.99
595_A598_H0.7990.99
269_S273_W0.7980.99
654_D657_A0.7980.99
540_T544_V0.7940.99
327_L341_V0.7920.99
411_T699_D0.7910.99
377_P679_T0.7900.99
705_I717_M0.7880.99
652_R755_H0.7870.99
436_I782_F0.7860.99
772_H776_Q0.7850.99
108_M113_C0.7840.99
291_M807_V0.7840.99
147_P163_A0.7830.99
312_K316_K0.7820.99
243_K246_L0.7810.99
728_L744_A0.7810.99
518_D712_G0.7800.99
318_L745_I0.7790.99
182_M301_M0.7790.99
551_R576_Q0.7780.99
382_K386_D0.7780.99
108_M117_V0.7770.99
353_D561_S0.7770.99
245_L254_T0.7770.99
223_G227_L0.7760.99
683_I686_E0.7750.99
549_A553_A0.7750.99
616_K619_E0.7740.99
241_A254_T0.7730.99
606_A609_N0.7710.99
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311_S746_E0.5100.87
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210_M214_D0.5080.87
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609_N612_Q0.5060.87
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550_L554_A0.5050.87
270_V284_L0.5050.87
452_A470_I0.5050.87
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543_D640_K0.5040.87
363_Q581_N0.5040.87
195_V198_P0.5040.87
230_M293_I0.5040.87
309_R828_L0.5030.87
468_L472_T0.5030.87
737_M751_T0.5030.87
274_P282_R0.5030.87
553_A643_A0.5020.86
717_M788_G0.5020.86
520_V735_I0.5020.86
226_T289_S0.5010.86
483_L508_A0.5010.86
117_V159_Y0.5010.86
117_V139_A0.5010.86
107_G137_R0.5010.86
691_E704_A0.5010.86
449_L452_A0.5010.86
444_V481_C0.5000.86
559_G602_L0.5000.86
200_M204_M0.5000.86
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bbjA 1 0.7842 100 0.268 Contact Map
3j09A 2 0.8537 100 0.281 Contact Map
4umwA 1 0.7194 100 0.308 Contact Map
3j08A 2 0.7638 100 0.346 Contact Map
1mhsA 2 0.8165 100 0.529 Contact Map
3b8cA 1 0.7482 100 0.53 Contact Map
2zxeA 1 0.7638 100 0.548 Contact Map
3ixzA 1 0.771 100 0.55 Contact Map
3ar4A 1 0.7554 100 0.557 Contact Map
3skxA 1 0.3106 100 0.799 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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