GREMLIN Database
YQJK - Uncharacterized protein YqjK
UniProt: Q47710 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14314
Length: 99 (91)
Sequences: 110 (80)
Seq/√Len: 8.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
87_L91_T2.6560.82
59_V62_I2.6040.80
64_T76_R2.5270.78
17_Q60_M2.1380.65
3_S64_T2.1270.65
11_K14_L1.9650.58
19_Q23_L1.9480.58
63_W85_W1.9010.56
88_V92_L1.8300.53
9_R86_R1.6560.45
63_W83_S1.6300.44
64_T87_L1.5890.43
28_S46_L1.5750.42
84_A89_K1.5360.40
35_T39_Y1.4310.36
7_R26_S1.4290.36
29_R33_L1.4270.36
7_R33_L1.4240.36
48_S83_S1.4200.36
58_S73_R1.4010.35
55_V59_V1.3990.35
69_N89_K1.3940.35
64_T86_R1.3940.35
7_R84_A1.3350.33
4_K8_E1.3340.33
45_M57_S1.3270.32
39_Y90_T1.3230.32
58_S65_I1.3180.32
78_G88_V1.3160.32
70_M75_A1.3110.32
44_N58_S1.3100.32
28_S33_L1.2720.30
52_W55_V1.2590.30
62_I79_F1.2460.29
15_L37_G1.2460.29
66_R81_V1.2280.29
57_S73_R1.2120.28
15_L88_V1.2060.28
80_G90_T1.1910.28
26_S35_T1.1830.27
41_R65_I1.1760.27
31_E79_F1.1400.26
67_H73_R1.1320.26
74_W77_R1.1180.25
19_Q77_R1.0990.25
41_R82_W1.0720.24
10_R88_V1.0700.24
16_S23_L1.0690.24
58_S92_L1.0610.23
57_S67_H1.0600.23
39_Y75_A1.0510.23
26_S39_Y1.0400.23
15_L81_V1.0360.23
41_R50_R1.0320.23
7_R27_A1.0200.22
47_L71_L1.0020.22
15_L35_T0.9980.22
78_G85_W0.9980.22
38_A54_L0.9660.21
61_A82_W0.9570.20
11_K67_H0.9560.20
5_V81_V0.9530.20
45_M62_I0.9200.19
12_A44_N0.9120.19
39_Y71_L0.9090.19
5_V93_K0.9080.19
5_V9_R0.8710.18
50_R74_W0.8680.18
61_A87_L0.8600.18
75_A78_G0.8570.18
63_W70_M0.8500.18
59_V71_L0.8490.18
4_K55_V0.8450.17
61_A77_R0.8370.17
48_S81_V0.8360.17
16_S54_L0.8320.17
27_A43_W0.8230.17
19_Q73_R0.8180.17
13_Q18_I0.8170.17
51_S87_L0.8090.17
27_A47_L0.8080.17
10_R37_G0.7740.16
59_V86_R0.7720.16
18_I72_V0.7550.15
59_V89_K0.7530.15
10_R45_M0.7470.15
11_K46_L0.7450.15
34_E88_V0.7370.15
66_R84_A0.7290.15
16_S84_A0.7230.15
17_Q34_E0.7220.15
52_W93_K0.7170.15
11_K90_T0.7080.14
37_G46_L0.7040.14
65_I92_L0.6990.14
88_V91_T0.6830.14
69_N87_L0.6770.14
12_A16_S0.6710.14
67_H72_V0.6700.14
24_D86_R0.6590.13
4_K13_Q0.6570.13
49_L58_S0.6500.13
49_L75_A0.6490.13
24_D50_R0.6460.13
7_R77_R0.6460.13
35_T38_A0.6400.13
41_R61_A0.6270.13
51_S84_A0.6270.13
8_E29_R0.6240.13
19_Q27_A0.6240.13
39_Y48_S0.6220.13
33_L44_N0.6140.13
34_E60_M0.6110.13
47_L59_V0.6090.12
55_V65_I0.6080.12
67_H90_T0.6070.12
51_S63_W0.6040.12
9_R70_M0.5990.12
63_W92_L0.5970.12
15_L74_W0.5850.12
56_G71_L0.5840.12
52_W89_K0.5730.12
13_Q46_L0.5720.12
23_L83_S0.5610.12
48_S53_A0.5610.12
32_W56_G0.5530.11
6_E48_S0.5500.11
10_R42_R0.5470.11
49_L79_F0.5390.11
56_G73_R0.5390.11
7_R13_Q0.5250.11
78_G83_S0.5240.11
57_S85_W0.5150.11
75_A88_V0.5070.11
14_L33_L0.5030.11
10_R92_L0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1a93A 1 0.2121 15.8 0.934 Contact Map
4i43B 1 0.7778 14.8 0.935 Contact Map
4mqvB 1 0.1616 5.5 0.946 Contact Map
4eweA 1 0.3333 3.8 0.951 Contact Map
2mvhA 1 0.2626 2.6 0.955 Contact Map
3w9iA 3 0.404 1.7 0.959 Contact Map
2l0lA 1 0.2727 1.6 0.96 Contact Map
2qxfA 1 0.2525 1.5 0.961 Contact Map
2d9mA 1 0.2727 1.3 0.962 Contact Map
4owfA 2 0.2828 1.3 0.962 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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