HCAT - ECOLI - GREMLIN Contacts

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HCAT - Probable 3-phenylpropionic acid transporter

UniProt:	Q47142	Sequences: MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLLLGAGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIGFNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVILALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13454
Length:	379 (359)
Sequences:	166240 (120237)
Seq/√Len:	6345.8

ECOLI - HCAT MDTL LACY NEPI MDTM MDFA YEGT YDHP ARAJ HSRA BCR YAAU YDJE SETA YDIM SETC YBJJ EMRD YDHC TSGA RHMT ENTS YJHB UHPC YDFJ YNFM YGCS FUCP YEBQ KGTP SOTB YJJL YGAY EXUT ARAE YHJE SETB SHIA MDTD NANT YAJR YDJK NUPG CYNX MDTG MDTH YDEE YAGG YDIN GALP DGOT PROP UHPT UIDB AMPG MHPT YIHP XAPB MELB XYLE YICJ YCAD YIHN FSR GARP YIHO YHJX YJIJ YQCE NARU YEAN GUDP GLPT LPLT EMRY YFCJ NARK YHHS EMRB
BACSU - YFKF GLCP YFMI PBUE YVMA YJBB NAIP YCEJ YFHI YTTB YXLH YWBF YDGK CSBX YOAB YCNB YBCL MMR YFKL BMR1 YBFB YVKA TCRB YYBO YQGE YFIS EXUT YWFA CSBC BBEX ARAE YWTG YFNC YTBD YYAJ YWOD NARK YNCC YXAM YDEG YCXA BMR2 YUXJ YDER YYBF YFIG YQJV YNAJ YWOG YKUC YUBD IOLT YITG YDDS YVQJ NASA LMRB YHJO GUTA GLPT GUDP YFMO YYCB YJMB IOLF YHCA YUSP YXIO BMR3 YFIU YCLF
HALSA - Q9HMR5 Q9HMQ8 Q9HSM8 Q9HSK3 Q9HRX5 O54630 Q9HPD6 Q9HN67 Q9HS33 Q9HSE5
SULSO - Q97V89 Q97YY8 Q97WR1 Q97Y43 Q97U43 Q97U80 Q97YL8 Q97U98 Q97VT2 Q97WS7 Q97UD8 Q97VB9 Q7LX71 Q97U99 Q97X02 Q97YG2 Q7LX65 Q97UY7 Q97VB7 Q97ZC9 Q97VV2 Q97UR4 Q97Y11 Q97X92 Q97X47 Q97YH0 Q97WP8 Q97Z36 Q97WR9 Q980K3 Q97U76 Q97VC8 Q97X63 Q97VU3 Q97WT1 Q97Z07 Q97U71 Q97VD1 Q97VQ5 Q97XW7 Q97U91 Q97Y15 Q97UK1 Q97YI4 Q97Z05 Q97UJ4 Q97WJ7 Q97YW8 Q97UY6 Q97XG8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
91_A	95_W	3.879	1.00
86_A	99_V	3.853	1.00
69_L	120_T	3.825	1.00
79_L	106_F	3.682	1.00
88_W	161_A	3.210	1.00
51_A	101_I	3.144	1.00
59_I	109_P	3.100	1.00
83_F	99_V	2.976	1.00
94_A	98_L	2.790	1.00
76_L	109_P	2.790	1.00
122_Q	128_D	2.770	1.00
92_H	95_W	2.746	1.00
64_S	324_I	2.726	1.00
81_L	167_V	2.696	1.00
83_F	106_F	2.691	1.00
319_Q	326_L	2.676	1.00
93_V	97_M	2.648	1.00
235_S	238_A	2.591	1.00
37_T	40_T	2.520	1.00
196_A	200_L	2.471	1.00
266_A	317_A	2.427	1.00
126_P	262_R	2.411	1.00
216_G	342_M	2.408	1.00
212_C	338_S	2.392	1.00
276_C	303_T	2.359	1.00
249_A	298_I	2.354	1.00
70_I	74_R	2.334	1.00
283_I	296_V	2.243	1.00
83_F	102_G	2.226	1.00
55_G	105_L	2.210	1.00
40_T	93_V	2.146	1.00
291_P	295_V	2.110	1.00
172_L	176_I	2.085	1.00
90_G	95_W	2.030	1.00
359_W	363_L	2.010	1.00
154_F	158_V	1.985	1.00
253_I	302_G	1.970	1.00
63_V	113_L	1.964	1.00
289_A	292_W	1.932	1.00
10_A	135_W	1.917	1.00
85_V	164_T	1.875	1.00
90_G	99_V	1.861	1.00
67_S	71_S	1.832	1.00
265_S	268_D	1.825	1.00
259_K	263_R	1.799	1.00
83_F	103_F	1.797	1.00
44_L	96_L	1.760	1.00
280_R	303_T	1.706	1.00
61_P	65_D	1.705	1.00
51_A	55_G	1.685	1.00
47_A	97_M	1.680	1.00
87_F	99_V	1.669	1.00
60_A	64_S	1.659	1.00
285_G	359_W	1.654	1.00
220_A	346_A	1.647	1.00
280_R	296_V	1.642	1.00
161_A	165_L	1.641	1.00
55_G	108_S	1.632	1.00
88_W	164_T	1.624	1.00
197_W	200_L	1.621	1.00
47_A	101_I	1.598	1.00
234_Y	238_A	1.593	1.00
55_G	58_L	1.586	1.00
273_S	306_V	1.583	1.00
278_V	369_M	1.571	1.00
285_G	362_A	1.568	1.00
36_L	93_V	1.539	1.00
36_L	40_T	1.533	1.00
348_F	352_Y	1.518	1.00
278_V	366_L	1.494	1.00
194_W	197_W	1.475	1.00
149_K	153_M	1.474	1.00
257_S	306_V	1.469	1.00
81_L	164_T	1.444	1.00
62_R	72_A	1.440	1.00
58_L	61_P	1.436	1.00
246_G	301_C	1.425	1.00
71_S	74_R	1.421	1.00
158_V	161_A	1.416	1.00
291_P	294_I	1.415	1.00
268_D	271_L	1.414	1.00
71_S	75_V	1.406	1.00
76_L	106_F	1.405	1.00
258_N	262_R	1.404	1.00
271_L	369_M	1.402	1.00
94_A	97_M	1.398	1.00
38_P	351_Q	1.392	1.00
249_A	253_I	1.372	1.00
95_W	99_V	1.368	1.00
75_V	79_L	1.345	1.00
127_L	262_R	1.345	1.00
282_G	286_A	1.336	1.00
217_A	365_A	1.336	1.00
66_P	72_A	1.335	1.00
120_T	323_V	1.326	1.00
62_R	66_P	1.323	1.00
267_R	271_L	1.310	1.00
145_A	244_S	1.308	1.00
230_Q	239_V	1.306	1.00
230_Q	236_A	1.289	1.00
63_V	69_L	1.282	1.00
50_V	340_A	1.277	1.00
81_L	168_A	1.274	1.00
87_F	96_L	1.268	1.00
253_I	256_L	1.262	1.00
256_L	259_K	1.259	1.00
29_V	32_K	1.259	1.00
171_L	175_L	1.256	1.00
260_L	264_C	1.238	1.00
272_I	276_C	1.234	1.00
219_A	339_I	1.232	1.00
275_I	369_M	1.232	1.00
79_L	83_F	1.231	1.00
363_L	367_P	1.229	1.00
31_L	41_I	1.223	1.00
74_R	174_F	1.222	1.00
17_F	136_G	1.207	1.00
238_A	241_Y	1.203	1.00
152_T	237_S	1.194	1.00
85_V	89_A	1.190	1.00
259_K	262_R	1.187	1.00
119_N	125_F	1.184	1.00
193_G	196_A	1.169	1.00
250_E	305_T	1.169	1.00
64_S	325_R	1.168	1.00
349_L	353_L	1.156	1.00
29_V	33_G	1.156	1.00
155_D	158_V	1.153	1.00
192_T	195_S	1.152	1.00
280_R	300_H	1.141	1.00
150_L	158_V	1.141	1.00
118_A	132_V	1.136	1.00
145_A	149_K	1.128	1.00
255_A	259_K	1.125	1.00
275_I	279_V	1.124	1.00
173_G	176_I	1.124	1.00
280_R	299_L	1.123	1.00
70_I	179_T	1.120	1.00
86_A	89_A	1.118	1.00
205_W	209_A	1.114	1.00
271_L	373_P	1.108	1.00
241_Y	245_L	1.108	1.00
359_W	362_A	1.107	1.00
46_G	344_V	1.104	1.00
228_Y	232_A	1.100	1.00
290_L	294_I	1.098	1.00
338_S	342_M	1.094	1.00
53_F	340_A	1.093	1.00
366_L	370_F	1.091	1.00
229_W	234_Y	1.088	1.00
273_S	307_C	1.087	1.00
125_F	317_A	1.087	1.00
46_G	340_A	1.086	1.00
268_D	272_I	1.081	1.00
192_T	196_A	1.080	1.00
278_V	282_G	1.079	1.00
66_P	71_S	1.079	1.00
282_G	362_A	1.077	1.00
40_T	97_M	1.075	1.00
295_V	298_I	1.067	1.00
43_L	344_V	1.067	1.00
178_P	181_Q	1.061	1.00
82_L	86_A	1.060	1.00
277_G	365_A	1.059	1.00
274_A	368_A	1.054	1.00
51_A	104_N	1.053	1.00
127_L	131_K	1.051	1.00
315_I	330_Y	1.050	1.00
74_R	175_L	1.047	1.00
100_M	104_N	1.047	1.00
39_E	351_Q	1.044	1.00
347_G	351_Q	1.039	1.00
12_G	110_L	1.037	1.00
360_V	364_V	1.036	1.00
98_L	102_G	1.036	1.00
204_N	208_L	1.035	1.00
202_R	206_R	1.030	1.00
48_G	52_R	1.025	1.00
67_S	72_A	1.023	1.00
201_V	205_W	1.017	1.00
273_S	303_T	1.014	1.00
172_L	175_L	1.009	1.00
196_A	199_A	1.009	1.00
193_G	197_W	1.006	1.00
191_S	194_W	1.004	1.00
39_E	43_L	1.001	1.00
60_A	324_I	0.998	1.00
33_G	157_R	0.998	1.00
360_V	363_L	0.998	1.00
189_Q	192_T	0.988	1.00
80_T	106_F	0.986	1.00
199_A	205_W	0.984	1.00
86_A	95_W	0.982	1.00
252_I	255_A	0.980	1.00
148_G	240_G	0.976	1.00
215_Q	335_M	0.976	1.00
287_T	296_V	0.973	1.00
281_W	285_G	0.970	1.00
72_A	75_V	0.965	1.00
27_W	41_I	0.962	1.00
264_C	269_M	0.958	1.00
283_I	286_A	0.957	1.00
89_A	161_A	0.956	1.00
248_V	252_I	0.954	1.00
53_F	332_A	0.949	1.00
210_C	372_R	0.947	1.00
48_G	104_N	0.946	1.00
43_L	47_A	0.946	1.00
356_G	359_W	0.945	1.00
88_W	157_R	0.944	1.00
74_R	78_L	0.944	1.00
42_G	46_G	0.943	1.00
57_L	61_P	0.942	1.00
276_C	280_R	0.942	1.00
64_S	69_L	0.941	1.00
31_L	36_L	0.939	1.00
252_I	256_L	0.935	1.00
42_G	224_F	0.935	1.00
271_L	275_I	0.933	1.00
19_S	22_I	0.932	1.00
295_V	299_L	0.931	1.00
211_V	330_Y	0.931	1.00
69_L	116_A	0.927	1.00
47_A	51_A	0.926	1.00
265_S	269_M	0.920	1.00
95_W	98_L	0.914	1.00
229_W	293_L	0.913	1.00
227_I	231_A	0.912	1.00
74_R	171_L	0.910	1.00
202_R	205_W	0.907	1.00
112_P	115_D	0.905	1.00
190_E	193_G	0.903	1.00
261_F	310_A	0.895	1.00
164_T	168_A	0.894	1.00
362_A	366_L	0.892	1.00
71_S	179_T	0.883	1.00
271_L	274_A	0.882	1.00
48_G	107_F	0.882	1.00
38_P	231_A	0.881	1.00
75_V	78_L	0.877	1.00
237_S	241_Y	0.874	1.00
119_N	323_V	0.867	1.00
69_L	179_T	0.862	1.00
264_C	268_D	0.859	1.00
137_S	250_E	0.858	1.00
81_L	171_L	0.853	1.00
278_V	365_A	0.853	1.00
313_R	317_A	0.849	1.00
278_V	362_A	0.849	1.00
292_W	295_V	0.848	1.00
161_A	164_T	0.847	1.00
108_S	112_P	0.843	1.00
287_T	292_W	0.841	1.00
40_T	43_L	0.840	1.00
127_L	259_K	0.838	1.00
249_A	252_I	0.837	1.00
80_T	167_V	0.836	1.00
309_L	313_R	0.834	1.00
67_S	179_T	0.832	1.00
117_L	121_W	0.828	1.00
146_L	149_K	0.826	1.00
26_F	30_W	0.825	1.00
50_V	53_F	0.821	1.00
56_S	331_S	0.819	1.00
78_L	82_L	0.817	1.00
158_V	162_L	0.816	1.00
279_V	283_I	0.814	1.00
26_F	151_V	0.813	1.00
55_G	59_I	0.810	1.00
280_R	283_I	0.809	1.00
348_F	351_Q	0.808	1.00
84_A	103_F	0.807	1.00
19_S	100_M	0.805	1.00
337_G	341_I	0.804	1.00
150_L	154_F	0.803	1.00
44_L	97_M	0.801	1.00
361_M	365_A	0.800	1.00
275_I	278_V	0.800	1.00
272_I	275_I	0.799	1.00
67_S	70_I	0.799	1.00
78_L	81_L	0.794	1.00
84_A	164_T	0.794	1.00
357_V	360_V	0.792	1.00
33_G	156_Y	0.790	1.00
85_V	161_A	0.788	1.00
129_Y	313_R	0.787	1.00
8_W	173_G	0.787	1.00
76_L	113_L	0.785	1.00
117_L	177_R	0.784	1.00
18_F	143_G	0.782	1.00
316_A	327_Q	0.782	1.00
73_L	117_L	0.779	1.00
242_L	294_I	0.778	1.00
345_F	348_F	0.777	1.00
165_L	168_A	0.776	1.00
170_M	174_F	0.775	1.00
49_L	53_F	0.774	1.00
170_M	173_G	0.773	1.00
203_Q	206_R	0.773	1.00
190_E	194_W	0.770	1.00
245_L	294_I	0.770	1.00
209_A	213_L	0.769	1.00
370_F	373_P	0.768	1.00
61_P	325_R	0.768	1.00
14_F	139_A	0.765	1.00
224_F	347_G	0.763	1.00
299_L	303_T	0.762	1.00
30_W	156_Y	0.760	1.00
142_I	145_A	0.758	1.00
84_A	163_L	0.757	1.00
274_A	369_M	0.755	1.00
253_I	257_S	0.755	1.00
213_L	364_V	0.752	1.00
191_S	197_W	0.748	1.00
100_M	103_F	0.748	1.00
19_S	163_L	0.745	1.00
162_L	165_L	0.738	1.00
256_L	260_L	0.738	1.00
129_Y	316_A	0.736	1.00
28_S	32_K	0.734	1.00
112_P	116_A	0.734	1.00
21_G	140_F	0.734	1.00
151_V	159_I	0.732	1.00
211_V	215_Q	0.732	1.00
59_I	108_S	0.725	1.00
214_L	307_C	0.724	1.00
91_A	94_A	0.723	1.00
328_A	332_A	0.723	1.00
171_L	174_F	0.723	1.00
201_V	318_R	0.722	1.00
163_L	166_G	0.721	1.00
244_S	248_V	0.717	1.00
191_S	196_A	0.714	1.00
357_V	361_M	0.714	1.00
77_A	170_M	0.712	1.00
344_V	348_F	0.709	1.00
141_V	248_V	0.708	1.00
12_G	73_L	0.706	1.00
87_F	90_G	0.705	1.00
45_L	223_G	0.705	1.00
36_L	41_I	0.704	1.00
80_T	107_F	0.701	1.00
109_P	113_L	0.699	1.00
54_L	57_L	0.698	1.00
44_L	93_V	0.698	1.00
213_L	368_A	0.697	1.00
87_F	103_F	0.697	1.00
31_L	38_P	0.695	1.00
100_M	111_V	0.694	1.00
14_F	142_I	0.693	1.00
234_Y	290_L	0.692	1.00
119_N	129_Y	0.692	1.00
277_G	303_T	0.688	1.00
294_I	298_I	0.687	1.00
39_E	344_V	0.687	1.00
119_N	316_A	0.686	1.00
48_G	100_M	0.686	1.00
43_L	97_M	0.684	1.00
220_A	361_M	0.682	1.00
15_T	19_S	0.682	1.00
134_L	255_A	0.681	1.00
175_L	178_P	0.681	1.00
286_A	359_W	0.679	1.00
229_W	232_A	0.679	1.00
234_Y	242_L	0.678	1.00
350_Y	353_L	0.678	1.00
10_A	131_K	0.676	1.00
140_F	247_V	0.676	1.00
283_I	287_T	0.674	1.00
158_V	165_L	0.674	1.00
144_S	244_S	0.673	1.00
197_W	322_E	0.673	1.00
91_A	157_R	0.671	1.00
296_V	299_L	0.669	1.00
282_G	285_G	0.666	1.00
54_L	58_L	0.663	1.00
306_V	310_A	0.662	1.00
292_W	296_V	0.662	1.00
227_I	230_Q	0.660	1.00
22_I	159_I	0.660	1.00
316_A	323_V	0.658	1.00
169_S	173_G	0.658	1.00
225_S	297_Q	0.657	1.00
81_L	85_V	0.656	1.00
238_A	290_L	0.653	1.00
157_R	161_A	0.651	1.00
82_L	85_V	0.648	1.00
84_A	100_M	0.646	1.00
149_K	152_T	0.642	1.00
174_F	178_P	0.641	1.00
20_Y	52_R	0.640	1.00
59_I	62_R	0.640	1.00
365_A	369_M	0.638	1.00
121_W	181_Q	0.636	1.00
247_V	251_V	0.635	1.00
367_P	371_L	0.634	1.00
137_S	251_V	0.633	1.00
63_V	72_A	0.631	1.00
148_G	244_S	0.628	1.00
86_A	90_G	0.626	1.00
135_W	139_A	0.626	1.00
46_G	343_T	0.626	1.00
89_A	95_W	0.625	1.00
149_K	241_Y	0.624	1.00
134_L	251_V	0.622	1.00
143_G	147_T	0.622	1.00
208_L	212_C	0.622	1.00
208_L	330_Y	0.620	1.00
257_S	260_L	0.620	1.00
98_L	101_I	0.619	1.00
340_A	344_V	0.619	1.00
19_S	80_T	0.617	1.00
273_S	310_A	0.617	1.00
49_L	343_T	0.617	1.00
246_G	297_Q	0.616	1.00
274_A	307_C	0.613	1.00
205_W	208_L	0.612	1.00
179_T	182_P	0.612	1.00
13_Y	17_F	0.611	1.00
253_I	305_T	0.610	1.00
99_V	102_G	0.610	1.00
13_Y	132_V	0.605	1.00
14_F	135_W	0.605	1.00
224_F	227_I	0.604	1.00
28_S	31_L	0.603	1.00
70_I	178_P	0.600	1.00
22_I	147_T	0.600	1.00
238_A	242_L	0.599	1.00
15_T	166_G	0.599	1.00
294_I	297_Q	0.599	1.00
73_L	114_T	0.597	1.00
245_L	298_I	0.596	1.00
87_F	160_L	0.595	1.00
144_S	243_W	0.595	1.00
195_S	198_L	0.595	1.00
271_L	278_V	0.594	1.00
183_Q	188_Q	0.593	1.00
314_Y	318_R	0.593	1.00
369_M	373_P	0.592	1.00
148_G	241_Y	0.592	1.00
56_S	328_A	0.591	1.00
211_V	335_M	0.591	1.00
209_A	212_C	0.591	1.00
74_R	170_M	0.590	1.00
168_A	172_L	0.590	1.00
224_F	346_A	0.589	1.00
26_F	159_I	0.588	1.00
312_M	316_A	0.587	1.00
80_T	110_L	0.587	1.00
300_H	304_F	0.586	1.00
42_G	347_G	0.585	1.00
49_L	52_R	0.583	1.00
118_A	128_D	0.582	1.00
173_G	177_R	0.582	1.00
363_L	370_F	0.581	1.00
358_F	362_A	0.580	1.00
18_F	163_L	0.579	1.00
206_R	371_L	0.579	1.00
53_F	336_G	0.579	1.00
59_I	112_P	0.577	1.00
52_R	336_G	0.576	1.00
301_C	305_T	0.575	1.00
74_R	77_A	0.575	1.00
223_G	226_A	0.575	1.00
59_I	72_A	0.572	1.00
212_C	216_G	0.572	1.00
269_M	272_I	0.571	1.00
147_T	159_I	0.569	1.00
341_I	345_F	0.567	1.00
350_Y	355_H	0.567	1.00
115_D	132_V	0.566	1.00
39_E	42_G	0.566	1.00
229_W	242_L	0.562	1.00
56_S	332_A	0.561	1.00
40_T	94_A	0.560	1.00
87_F	100_M	0.559	1.00
40_T	44_L	0.558	1.00
134_L	137_S	0.558	1.00
126_P	313_R	0.557	1.00
127_L	130_G	0.556	1.00
110_L	174_F	0.556	1.00
363_L	366_L	0.555	1.00
37_T	351_Q	0.554	1.00
277_G	280_R	0.550	1.00
364_V	368_A	0.550	1.00
145_A	148_G	0.546	1.00
242_L	245_L	0.546	1.00
149_K	154_F	0.546	1.00
285_G	288_T	0.545	1.00
262_R	265_S	0.544	1.00
27_W	30_W	0.544	1.00
206_R	210_C	0.543	1.00
139_A	143_G	0.540	1.00
162_L	166_G	0.539	1.00
298_I	301_C	0.537	1.00
138_V	142_I	0.536	1.00
260_L	263_R	0.536	1.00
367_P	370_F	0.536	1.00
209_A	371_L	0.535	1.00
256_L	302_G	0.535	1.00
169_S	172_L	0.534	1.00
46_G	50_V	0.532	1.00
203_Q	318_R	0.532	1.00
216_G	364_V	0.530	1.00
221_Y	225_S	0.529	1.00
18_F	21_G	0.528	1.00
126_P	258_N	0.528	1.00
368_A	372_R	0.527	1.00
213_L	217_A	0.525	1.00
18_F	22_I	0.524	1.00
148_G	236_A	0.520	1.00
133_R	137_S	0.520	1.00
365_A	368_A	0.520	1.00
163_L	167_V	0.518	1.00
141_V	244_S	0.516	1.00
349_L	352_Y	0.516	1.00
177_R	180_I	0.516	1.00
191_S	199_A	0.516	1.00
242_L	290_L	0.515	1.00
324_I	328_A	0.514	1.00
350_Y	357_V	0.514	1.00
46_G	49_L	0.511	1.00
134_L	138_V	0.511	1.00
38_P	350_Y	0.509	1.00
78_L	171_L	0.509	1.00
249_A	301_C	0.509	1.00
43_L	46_G	0.509	1.00
30_W	34_I	0.508	1.00
260_L	269_M	0.508	1.00
344_V	347_G	0.508	1.00
255_A	258_N	0.506	1.00
63_V	324_I	0.506	1.00
241_Y	244_S	0.506	1.00
177_R	181_Q	0.503	1.00
323_V	327_Q	0.502	1.00
116_A	324_I	0.501	1.00
217_A	220_A	0.500	1.00
60_A	63_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2gfpA	2	0.971	100	0.177	Contact Map
2cfqA	1	0.9921	100	0.202	Contact Map
1pw4A	1	0.971	100	0.204	Contact Map
3wdoA	1	0.9894	100	0.206	Contact Map
4j05A	3	0.9499	100	0.215	Contact Map
3o7qA	1	0.9894	100	0.216	Contact Map
4pypA	1	0.9842	100	0.234	Contact Map
4xnjA	1	0.9842	100	0.273	Contact Map
4w6vA	1	0.9657	100	0.284	Contact Map
4zw9A	1	0.9894	100	0.284	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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