YGCU - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YGCU - Uncharacterized FAD-linked oxidoreductase YgcU

UniProt:	Q46911	Sequences: MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13128
Length:	484 (425)
Sequences:	18236 (13633)
Seq/√Len:	661.3

ECOLI - YGCU GLCD YDIJ GLCE
BACSU - GLCD YVDP YITY YGAK
HALSA - Q9HMR2
SULSO - Q97U60 Q97Y18 Q7LX43 Q97ZB9 Q97U59 Q7LXI5 Q97Z67

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
179_E	218_E	3.964	1.00
60_T	179_E	3.960	1.00
71_N	471_N	3.736	1.00
156_V	219_V	3.460	1.00
107_Q	121_Q	3.365	1.00
176_V	222_K	3.175	1.00
74_K	471_N	3.069	1.00
112_D	115_N	2.974	1.00
106_N	128_V	2.970	1.00
240_D	243_T	2.921	1.00
179_E	189_R	2.917	1.00
132_A	135_E	2.900	1.00
119_T	220_T	2.856	1.00
119_T	218_E	2.841	1.00
58_G	104_A	2.820	1.00
55_V	66_V	2.730	1.00
138_Y	223_I	2.721	1.00
180_A	206_I	2.634	1.00
358_C	361_E	2.572	1.00
63_V	217_T	2.571	1.00
121_Q	218_E	2.449	1.00
64_S	187_V	2.436	1.00
182_L	186_T	2.427	1.00
177_G	189_R	2.339	1.00
124_V	129_L	2.339	1.00
67_L	77_G	2.281	1.00
183_A	474_M	2.241	1.00
177_G	220_T	2.226	1.00
127_E	131_N	2.174	1.00
113_I	136_K	2.167	1.00
365_S	431_R	2.095	1.00
108_I	124_V	2.035	1.00
182_L	188_T	2.021	1.00
61_E	64_S	2.014	1.00
69_F	73_H	2.012	1.00
299_E	303_E	1.985	1.00
60_T	187_V	1.970	1.00
125_P	128_V	1.962	1.00
242_K	364_E	1.955	1.00
195_R	198_A	1.947	1.00
179_E	187_V	1.932	1.00
118_A	129_L	1.930	1.00
60_T	64_S	1.919	1.00
60_T	217_T	1.914	1.00
61_E	65_R	1.897	1.00
56_K	104_A	1.895	1.00
180_A	214_C	1.868	1.00
178_L	206_I	1.865	1.00
100_L	215_Y	1.853	1.00
105_M	121_Q	1.851	1.00
24_D	27_V	1.849	1.00
63_V	215_Y	1.845	1.00
110_N	119_T	1.842	1.00
133_L	223_I	1.833	1.00
58_G	62_Q	1.819	1.00
80_R	83_A	1.816	1.00
117_Q	220_T	1.809	1.00
64_S	68_N	1.801	1.00
368_N	372_T	1.784	1.00
117_Q	176_V	1.778	1.00
116_M	138_Y	1.768	1.00
428_E	431_R	1.764	1.00
365_S	368_N	1.741	1.00
67_L	474_M	1.733	1.00
102_G	215_Y	1.732	1.00
157_A	209_N	1.723	1.00
59_S	62_Q	1.705	1.00
65_R	68_N	1.695	1.00
463_G	467_Q	1.689	1.00
79_P	215_Y	1.686	1.00
128_V	131_N	1.674	1.00
111_I	132_A	1.663	1.00
120_A	152_M	1.659	1.00
205_I	464_L	1.636	1.00
118_A	221_V	1.633	1.00
156_V	175_V	1.632	1.00
70_M	98_V	1.600	1.00
116_M	225_K	1.597	1.00
179_E	217_T	1.596	1.00
68_N	71_N	1.577	1.00
427_E	431_R	1.576	1.00
459_A	462_E	1.575	1.00
291_P	295_K	1.571	1.00
459_A	463_G	1.545	1.00
451_K	456_S	1.545	1.00
22_I	27_V	1.532	1.00
102_G	105_M	1.526	1.00
365_S	428_E	1.526	1.00
466_K	472_G	1.525	1.00
372_T	424_I	1.520	1.00
132_A	136_K	1.520	1.00
157_A	216_I	1.508	1.00
181_V	217_T	1.504	1.00
243_T	246_N	1.500	1.00
367_I	371_R	1.492	1.00
63_V	181_V	1.492	1.00
427_E	452_L	1.479	1.00
242_K	246_N	1.473	1.00
250_E	254_E	1.470	1.00
22_I	56_K	1.464	1.00
112_D	117_Q	1.463	1.00
206_I	214_C	1.459	1.00
174_M	224_F	1.455	1.00
460_L	463_G	1.454	1.00
108_I	132_A	1.452	1.00
444_K	478_T	1.446	1.00
67_L	71_N	1.443	1.00
155_L	171_I	1.443	1.00
156_V	221_V	1.439	1.00
177_G	195_R	1.436	1.00
361_E	365_S	1.431	1.00
141_G	174_M	1.428	1.00
120_A	221_V	1.428	1.00
69_F	75_I	1.424	1.00
420_P	424_I	1.410	1.00
175_V	178_L	1.398	1.00
94_V	97_S	1.394	1.00
183_A	468_F	1.384	1.00
55_V	98_V	1.384	1.00
462_E	466_K	1.374	1.00
63_V	100_L	1.367	1.00
190_I	199_G	1.365	1.00
121_Q	124_V	1.361	1.00
195_R	199_G	1.352	1.00
190_I	203_R	1.345	1.00
290_N	293_I	1.331	1.00
415_D	420_P	1.329	1.00
187_V	217_T	1.327	1.00
67_L	215_Y	1.319	1.00
364_E	368_N	1.317	1.00
246_N	250_E	1.316	1.00
295_K	299_E	1.313	1.00
423_K	427_E	1.312	1.00
107_Q	124_V	1.303	1.00
195_R	200_P	1.297	1.00
67_L	181_V	1.294	1.00
413_E	416_K	1.292	1.00
150_A	155_L	1.283	1.00
465_K	472_G	1.279	1.00
411_E	415_D	1.278	1.00
57_L	66_V	1.272	1.00
131_N	135_E	1.272	1.00
262_R	265_D	1.267	1.00
410_P	413_E	1.265	1.00
320_E	323_F	1.261	1.00
365_S	432_L	1.256	1.00
355_C	358_C	1.253	1.00
457_A	460_L	1.245	1.00
68_N	72_A	1.230	1.00
120_A	129_L	1.221	1.00
70_M	77_G	1.219	1.00
56_K	101_D	1.216	1.00
169_G	173_D	1.216	1.00
66_V	98_V	1.210	1.00
57_L	62_Q	1.209	1.00
62_Q	65_R	1.207	1.00
322_W	326_L	1.202	1.00
321_T	325_N	1.189	1.00
25_E	28_L	1.184	1.00
64_S	181_V	1.181	1.00
111_I	118_A	1.178	1.00
458_W	462_E	1.178	1.00
118_A	223_I	1.175	1.00
302_A	306_A	1.173	1.00
181_V	187_V	1.172	1.00
385_G	388_S	1.170	1.00
299_E	302_A	1.160	1.00
239_E	243_T	1.152	1.00
24_D	29_K	1.151	1.00
293_I	296_V	1.148	1.00
106_N	121_Q	1.141	1.00
188_T	199_G	1.135	1.00
118_A	133_L	1.130	1.00
412_E	415_D	1.129	1.00
463_G	466_K	1.124	1.00
369_R	372_T	1.110	1.00
175_V	207_I	1.109	1.00
130_E	142_H	1.108	1.00
369_R	428_E	1.105	1.00
71_N	473_I	1.101	1.00
368_N	371_R	1.099	1.00
156_V	171_I	1.096	1.00
260_I	267_E	1.089	1.00
111_I	138_Y	1.085	1.00
206_I	216_I	1.084	1.00
66_V	100_L	1.084	1.00
332_K	335_A	1.081	1.00
204_H	460_L	1.080	1.00
321_T	324_N	1.079	1.00
369_R	424_I	1.076	1.00
53_A	98_V	1.069	1.00
21_V	55_V	1.068	1.00
440_H	443_G	1.065	1.00
365_S	369_R	1.065	1.00
182_L	468_F	1.063	1.00
180_A	188_T	1.057	1.00
439_H	442_I	1.056	1.00
80_R	99_V	1.052	1.00
77_G	100_L	1.052	1.00
74_K	473_I	1.047	1.00
438_H	441_G	1.040	1.00
416_K	420_P	1.040	1.00
128_V	132_A	1.034	1.00
264_Y	267_E	1.027	1.00
338_V	341_L	1.021	1.00
250_E	308_Y	1.015	1.00
362_I	366_V	1.013	1.00
153_G	219_V	1.011	1.00
81_T	151_Q	1.005	1.00
201_D	204_H	1.001	1.00
437_V	442_I	1.000	1.00
141_G	224_F	0.995	1.00
383_L	386_H	0.989	1.00
68_N	186_T	0.989	1.00
437_V	440_H	0.987	1.00
76_N	97_S	0.986	1.00
306_A	309_P	0.985	1.00
178_L	203_R	0.984	1.00
23_T	53_A	0.983	1.00
411_E	414_I	0.980	1.00
60_T	121_Q	0.977	1.00
247_I	250_E	0.975	1.00
300_G	303_E	0.973	1.00
56_K	103_S	0.971	1.00
250_E	253_V	0.971	1.00
388_S	391_Y	0.966	1.00
52_A	96_N	0.966	1.00
209_N	213_L	0.966	1.00
266_A	270_T	0.964	1.00
418_H	423_K	0.962	1.00
77_G	473_I	0.960	1.00
102_G	122_C	0.958	1.00
262_R	267_E	0.958	1.00
296_V	299_E	0.958	1.00
326_L	329_G	0.954	1.00
138_Y	225_K	0.953	1.00
439_H	443_G	0.952	1.00
22_I	28_L	0.949	1.00
255_G	258_P	0.948	1.00
362_I	432_L	0.943	1.00
184_D	188_T	0.943	1.00
360_H	364_E	0.942	1.00
450_S	454_H	0.942	1.00
456_S	459_A	0.938	1.00
258_P	267_E	0.932	1.00
152_M	221_V	0.932	1.00
60_T	181_V	0.931	1.00
420_P	423_K	0.929	1.00
298_G	302_A	0.929	1.00
262_R	266_A	0.923	1.00
428_E	432_L	0.923	1.00
189_R	220_T	0.920	1.00
258_P	265_D	0.912	1.00
112_D	119_T	0.909	1.00
205_I	213_L	0.908	1.00
85_A	89_G	0.908	1.00
441_G	444_K	0.907	1.00
440_H	444_K	0.904	1.00
174_M	222_K	0.902	1.00
259_S	262_R	0.902	1.00
126_L	142_H	0.901	1.00
178_L	219_V	0.898	1.00
190_I	206_I	0.896	1.00
386_H	390_S	0.896	1.00
323_F	326_L	0.895	1.00
63_V	105_M	0.892	1.00
361_E	364_E	0.886	1.00
196_R	200_P	0.883	1.00
28_L	32_S	0.883	1.00
380_I	385_G	0.882	1.00
63_V	102_G	0.877	1.00
80_R	101_D	0.877	1.00
75_I	98_V	0.876	1.00
303_E	306_A	0.874	1.00
265_D	268_D	0.874	1.00
349_T	352_V	0.874	1.00
325_N	329_G	0.872	1.00
258_P	262_R	0.864	1.00
381_T	384_G	0.863	1.00
286_M	289_G	0.862	1.00
386_H	389_H	0.862	1.00
29_K	33_I	0.861	1.00
427_E	430_I	0.860	1.00
65_R	69_F	0.856	1.00
124_V	128_V	0.853	1.00
258_P	261_A	0.852	1.00
106_N	124_V	0.852	1.00
424_I	427_E	0.848	1.00
234_Y	238_L	0.848	1.00
152_M	219_V	0.847	1.00
189_R	218_E	0.847	1.00
200_P	212_A	0.846	1.00
118_A	132_A	0.846	1.00
81_T	102_G	0.844	1.00
327_N	331_D	0.844	1.00
127_E	148_P	0.842	1.00
260_I	265_D	0.838	1.00
341_L	347_G	0.838	1.00
353_S	435_S	0.835	1.00
398_Y	403_Y	0.834	1.00
364_E	367_I	0.834	1.00
197_A	200_P	0.832	1.00
81_T	122_C	0.829	1.00
57_L	104_A	0.824	1.00
175_V	219_V	0.823	1.00
298_G	305_V	0.823	1.00
127_E	149_L	0.823	1.00
414_I	417_Y	0.819	1.00
126_L	155_L	0.818	1.00
52_A	97_S	0.817	1.00
249_R	253_V	0.814	1.00
178_L	216_I	0.812	1.00
362_I	370_I	0.812	1.00
386_H	391_Y	0.812	1.00
319_I	323_F	0.812	1.00
122_C	219_V	0.811	1.00
103_S	151_Q	0.810	1.00
26_T	29_K	0.810	1.00
242_K	360_H	0.809	1.00
346_M	349_T	0.809	1.00
258_P	264_Y	0.808	1.00
387_S	390_S	0.806	1.00
82_G	151_Q	0.805	1.00
216_I	219_V	0.805	1.00
76_N	475_N	0.804	1.00
361_E	432_L	0.804	1.00
25_E	29_K	0.804	1.00
326_L	331_D	0.804	1.00
328_W	331_D	0.802	1.00
266_A	280_K	0.800	1.00
380_I	384_G	0.800	1.00
245_F	249_R	0.799	1.00
285_F	288_E	0.795	1.00
57_L	102_G	0.793	1.00
60_T	105_M	0.793	1.00
385_G	390_S	0.793	1.00
350_T	353_S	0.788	1.00
248_L	252_M	0.788	1.00
358_C	432_L	0.788	1.00
246_N	249_R	0.787	1.00
347_G	351_E	0.785	1.00
318_L	323_F	0.784	1.00
320_E	324_N	0.782	1.00
270_T	274_T	0.778	1.00
382_M	388_S	0.777	1.00
117_Q	222_K	0.775	1.00
339_Q	345_N	0.772	1.00
436_M	440_H	0.771	1.00
382_M	386_H	0.771	1.00
302_A	305_V	0.770	1.00
129_L	152_M	0.767	1.00
382_M	385_G	0.764	1.00
260_I	264_Y	0.762	1.00
126_L	129_L	0.760	1.00
293_I	297_T	0.760	1.00
384_G	388_S	0.757	1.00
438_H	443_G	0.753	1.00
436_M	439_H	0.752	1.00
297_T	300_G	0.752	1.00
399_F	402_D	0.751	1.00
319_I	322_W	0.750	1.00
398_Y	401_Y	0.750	1.00
60_T	63_V	0.749	1.00
258_P	263_L	0.746	1.00
380_I	424_I	0.744	1.00
170_A	173_D	0.743	1.00
156_V	216_I	0.741	1.00
153_G	157_A	0.741	1.00
24_D	28_L	0.740	1.00
464_L	468_F	0.739	1.00
263_L	267_E	0.738	1.00
176_V	220_T	0.737	1.00
437_V	443_G	0.737	1.00
347_G	350_T	0.737	1.00
183_A	473_I	0.735	1.00
21_V	53_A	0.734	1.00
430_I	452_L	0.734	1.00
448_H	451_K	0.733	1.00
30_K	33_I	0.731	1.00
383_L	388_S	0.730	1.00
31_N	36_F	0.726	1.00
79_P	102_G	0.726	1.00
257_R	261_A	0.726	1.00
234_Y	237_I	0.726	1.00
61_E	187_V	0.724	1.00
71_N	184_D	0.721	1.00
257_R	260_I	0.718	1.00
126_L	150_A	0.718	1.00
340_I	345_N	0.716	1.00
437_V	441_G	0.715	1.00
261_A	264_Y	0.709	1.00
260_I	266_A	0.707	1.00
259_S	288_E	0.707	1.00
54_V	99_V	0.707	1.00
131_N	134_R	0.704	1.00
51_P	99_V	0.703	1.00
318_L	321_T	0.703	1.00
301_I	305_V	0.701	1.00
62_Q	66_V	0.699	1.00
339_Q	342_K	0.698	1.00
199_G	468_F	0.697	1.00
380_I	383_L	0.697	1.00
201_D	467_Q	0.697	1.00
260_I	263_L	0.697	1.00
397_M	402_D	0.696	1.00
412_E	416_K	0.695	1.00
67_L	183_A	0.695	1.00
459_A	466_K	0.693	1.00
395_T	398_Y	0.691	1.00
326_L	330_P	0.688	1.00
259_S	265_D	0.687	1.00
140_T	223_I	0.685	1.00
103_S	125_P	0.685	1.00
29_K	50_I	0.684	1.00
105_M	217_T	0.682	1.00
396_N	400_V	0.680	1.00
159_R	170_A	0.676	1.00
177_G	218_E	0.675	1.00
450_S	458_W	0.674	1.00
465_K	475_N	0.673	1.00
472_G	475_N	0.670	1.00
317_K	320_E	0.670	1.00
307_R	310_Q	0.670	1.00
196_R	199_G	0.668	1.00
250_E	307_R	0.668	1.00
180_A	190_I	0.666	1.00
178_L	190_I	0.665	1.00
201_D	464_L	0.664	1.00
397_M	403_Y	0.661	1.00
396_N	399_F	0.660	1.00
442_I	450_S	0.659	1.00
292_R	296_V	0.659	1.00
414_I	418_H	0.659	1.00
408_C	411_E	0.658	1.00
434_G	438_H	0.656	1.00
57_L	63_V	0.654	1.00
380_I	388_S	0.653	1.00
323_F	328_W	0.653	1.00
267_E	270_T	0.652	1.00
407_D	410_P	0.652	1.00
259_S	263_L	0.652	1.00
346_M	350_T	0.651	1.00
25_E	50_I	0.649	1.00
263_L	266_A	0.648	1.00
189_R	198_A	0.644	1.00
147_K	150_A	0.643	1.00
242_K	361_E	0.641	1.00
262_R	268_D	0.638	1.00
294_A	298_G	0.638	1.00
126_L	152_M	0.637	1.00
340_I	343_T	0.637	1.00
213_L	464_L	0.637	1.00
415_D	418_H	0.636	1.00
26_T	30_K	0.636	1.00
348_F	351_E	0.636	1.00
337_R	340_I	0.635	1.00
285_F	289_G	0.634	1.00
257_R	262_R	0.634	1.00
343_T	346_M	0.633	1.00
392_Q	395_T	0.632	1.00
317_K	321_T	0.632	1.00
28_L	31_N	0.632	1.00
338_V	345_N	0.631	1.00
345_N	348_F	0.630	1.00
78_V	97_S	0.628	1.00
396_N	403_Y	0.627	1.00
328_W	332_K	0.626	1.00
85_A	90_L	0.626	1.00
179_E	220_T	0.626	1.00
264_Y	268_D	0.625	1.00
254_E	300_G	0.622	1.00
22_I	31_N	0.622	1.00
351_E	355_C	0.621	1.00
133_L	136_K	0.620	1.00
249_R	252_M	0.619	1.00
438_H	444_K	0.619	1.00
188_T	460_L	0.618	1.00
387_S	392_Q	0.617	1.00
306_A	310_Q	0.617	1.00
108_I	121_Q	0.615	1.00
28_L	50_I	0.615	1.00
323_F	327_N	0.614	1.00
397_M	401_Y	0.613	1.00
384_G	387_S	0.612	1.00
76_N	476_T	0.610	1.00
57_L	105_M	0.608	1.00
64_S	67_L	0.608	1.00
296_V	300_G	0.607	1.00
398_Y	402_D	0.607	1.00
203_R	207_I	0.606	1.00
295_K	302_A	0.606	1.00
400_V	403_Y	0.606	1.00
130_E	139_T	0.605	1.00
27_V	30_K	0.602	1.00
345_N	349_T	0.601	1.00
387_S	391_Y	0.601	1.00
69_F	98_V	0.600	1.00
111_I	136_K	0.599	1.00
111_I	223_I	0.598	1.00
436_M	441_G	0.597	1.00
413_E	417_Y	0.597	1.00
167_L	259_S	0.597	1.00
238_L	247_I	0.597	1.00
426_C	430_I	0.597	1.00
434_G	437_V	0.597	1.00
367_I	370_I	0.596	1.00
204_H	207_I	0.595	1.00
324_N	328_W	0.595	1.00
424_I	428_E	0.593	1.00
232_L	295_K	0.592	1.00
244_G	248_L	0.592	1.00
162_G	165_S	0.591	1.00
33_I	48_L	0.591	1.00
115_N	357_S	0.591	1.00
385_G	389_H	0.590	1.00
140_T	221_V	0.590	1.00
362_I	367_I	0.588	1.00
355_C	359_I	0.588	1.00
108_I	120_A	0.587	1.00
256_Y	259_S	0.587	1.00
319_I	324_N	0.587	1.00
127_E	147_K	0.581	1.00
279_G	282_V	0.579	1.00
240_D	244_G	0.577	1.00
31_N	56_K	0.577	1.00
165_S	170_A	0.576	1.00
195_R	203_R	0.576	1.00
451_K	458_W	0.575	1.00
322_W	325_N	0.574	1.00
29_K	32_S	0.573	1.00
277_A	280_K	0.572	1.00
283_L	288_E	0.572	1.00
344_G	350_T	0.569	1.00
188_T	457_A	0.569	1.00
190_I	195_R	0.568	1.00
254_E	304_I	0.568	1.00
439_H	444_K	0.568	1.00
228_P	231_N	0.566	1.00
120_A	124_V	0.566	1.00
450_S	453_E	0.566	1.00
458_W	461_L	0.564	1.00
342_K	346_M	0.564	1.00
396_N	402_D	0.564	1.00
263_L	268_D	0.563	1.00
247_I	305_V	0.562	1.00
60_T	218_E	0.561	1.00
112_D	116_M	0.561	1.00
281_C	285_F	0.561	1.00
447_V	450_S	0.560	1.00
113_I	116_M	0.558	1.00
305_V	310_Q	0.558	1.00
178_L	207_I	0.558	1.00
347_G	352_V	0.557	1.00
27_V	31_N	0.554	1.00
64_S	182_L	0.554	1.00
363_Y	367_I	0.554	1.00
120_A	219_V	0.554	1.00
116_M	222_K	0.552	1.00
82_G	125_P	0.552	1.00
359_I	363_Y	0.552	1.00
107_Q	110_N	0.552	1.00
388_S	392_Q	0.551	1.00
234_Y	285_F	0.551	1.00
57_L	100_L	0.550	1.00
251_I	301_I	0.549	1.00
395_T	403_Y	0.548	1.00
87_E	90_L	0.548	1.00
342_K	345_N	0.547	1.00
438_H	442_I	0.546	1.00
337_R	341_L	0.545	1.00
110_N	113_I	0.544	1.00
349_T	400_V	0.544	1.00
389_H	392_Q	0.544	1.00
366_V	370_I	0.544	1.00
344_G	351_E	0.543	1.00
202_I	468_F	0.541	1.00
304_I	308_Y	0.541	1.00
316_S	327_N	0.540	1.00
395_T	399_F	0.540	1.00
327_N	330_P	0.540	1.00
303_E	307_R	0.539	1.00
309_P	312_Q	0.539	1.00
125_P	151_Q	0.539	1.00
339_Q	347_G	0.539	1.00
167_L	288_E	0.539	1.00
385_G	391_Y	0.538	1.00
365_S	370_I	0.537	1.00
130_E	133_L	0.537	1.00
145_Q	155_L	0.537	1.00
294_A	302_A	0.537	1.00
363_Y	370_I	0.536	1.00
129_L	140_T	0.536	1.00
325_N	328_W	0.536	1.00
251_I	254_E	0.536	1.00
364_E	371_R	0.535	1.00
246_N	360_H	0.534	1.00
342_K	347_G	0.533	1.00
287_A	294_A	0.532	1.00
283_L	286_M	0.531	1.00
417_Y	422_N	0.530	1.00
241_M	245_F	0.530	1.00
281_C	284_I	0.530	1.00
51_P	54_V	0.529	0.99
460_L	467_Q	0.529	0.99
465_K	469_D	0.529	0.99
318_L	322_W	0.527	0.99
421_L	424_I	0.527	0.99
338_V	342_K	0.524	0.99
199_G	467_Q	0.524	0.99
292_R	295_K	0.520	0.99
183_A	471_N	0.520	0.99
186_T	457_A	0.520	0.99
287_A	301_I	0.520	0.99
230_N	291_P	0.519	0.99
472_G	479_I	0.518	0.99
340_I	347_G	0.517	0.99
317_K	323_F	0.516	0.99
346_M	351_E	0.515	0.99
366_V	369_R	0.515	0.99
126_L	145_Q	0.515	0.99
399_F	403_Y	0.513	0.99
440_H	446_R	0.511	0.99
449_W	452_L	0.511	0.99
76_N	473_I	0.511	0.99
45_I	48_L	0.510	0.99
110_N	117_Q	0.509	0.99
340_I	344_G	0.508	0.99
53_A	75_I	0.506	0.99
81_T	153_G	0.505	0.99
372_T	380_I	0.504	0.99
257_R	267_E	0.503	0.99
141_G	221_V	0.502	0.99
228_P	232_L	0.502	0.99
212_A	465_K	0.502	0.99
351_E	356_W	0.502	0.99
130_E	134_R	0.502	0.99
380_I	386_H	0.501	0.99
300_G	304_I	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2uuuA	2	0.9174	100	0.281	Contact Map
3pm9A	5	0.936	100	0.282	Contact Map
4bbyA	2	0.9669	100	0.328	Contact Map
1f0xA	1	0.8884	100	0.331	Contact Map
1wvfA	2	0.9421	100	0.34	Contact Map
1w1oA	1	0.876	100	0.344	Contact Map
4o95A	1	0.8698	100	0.346	Contact Map
2exrA	1	0.8678	100	0.35	Contact Map
4xloA	2	0.9153	100	0.362	Contact Map
4mlaA	1	0.9029	100	0.368	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0132 seconds.