YGBN - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YGBN - Inner membrane permease YgbN

UniProt:	Q46892	Sequences: MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13108
Length:	454 (420)
Sequences:	5765 (3880)
Seq/√Len:	189.3

ECOLI - YGBN YJHF GNTU GNTP IDNT GNTT DSDX YFCC
BACSU - YOJA GNTP YXJC YCGA
HALSA - Q9HNF6 Q9HNR2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
309_S	312_P	3.880	1.00
46_P	49_E	3.593	1.00
299_S	302_H	3.531	1.00
347_I	350_P	3.310	1.00
237_V	241_T	3.218	1.00
277_P	280_A	3.209	1.00
277_P	281_L	3.028	1.00
13_G	327_F	2.983	1.00
16_M	38_L	2.977	1.00
81_H	306_I	2.835	1.00
91_Y	95_K	2.782	1.00
329_K	333_E	2.768	1.00
424_S	427_D	2.766	1.00
13_G	39_V	2.720	1.00
246_I	287_L	2.688	1.00
437_T	441_F	2.595	1.00
353_P	444_F	2.583	1.00
53_V	333_E	2.573	1.00
338_K	342_N	2.512	1.00
81_H	302_H	2.503	1.00
91_Y	237_V	2.494	1.00
199_I	203_R	2.438	1.00
356_F	440_G	2.422	1.00
91_Y	94_R	2.378	1.00
445_L	449_C	2.360	1.00
15_I	19_L	2.298	1.00
238_A	242_S	2.188	1.00
236_G	239_L	2.186	1.00
359_S	376_T	2.179	1.00
46_P	50_V	2.134	1.00
342_N	345_Q	2.122	1.00
113_G	117_F	2.044	1.00
52_K	56_A	2.032	1.00
192_V	442_T	2.027	1.00
195_F	199_I	2.000	1.00
56_A	60_G	1.991	1.00
181_I	184_A	1.985	1.00
412_S	417_V	1.983	1.00
237_V	240_V	1.961	1.00
165_V	168_A	1.954	1.00
441_F	445_L	1.953	1.00
19_L	23_K	1.945	1.00
202_K	206_A	1.943	1.00
271_L	275_G	1.935	1.00
184_A	188_P	1.889	1.00
86_E	90_N	1.875	1.00
272_Q	275_G	1.858	1.00
204_Q	208_S	1.808	1.00
205_Y	208_S	1.793	1.00
47_A	50_V	1.786	1.00
247_P	251_I	1.784	1.00
171_L	399_A	1.781	1.00
413_G	417_V	1.766	1.00
188_P	192_V	1.754	1.00
73_A	307_M	1.753	1.00
16_M	35_V	1.747	1.00
238_A	241_T	1.712	1.00
240_V	243_L	1.699	1.00
103_A	194_Y	1.698	1.00
280_A	288_A	1.697	1.00
196_A	200_I	1.680	1.00
384_V	395_V	1.677	1.00
244_I	251_I	1.677	1.00
430_K	434_V	1.675	1.00
58_M	66_T	1.675	1.00
149_G	193_G	1.661	1.00
68_I	321_T	1.656	1.00
412_S	416_I	1.654	1.00
251_I	254_G	1.653	1.00
200_I	204_Q	1.639	1.00
355_A	399_A	1.628	1.00
144_G	421_L	1.627	1.00
360_L	405_G	1.609	1.00
280_A	285_L	1.601	1.00
364_A	406_A	1.598	1.00
206_A	210_E	1.589	1.00
339_A	343_M	1.584	1.00
167_A	373_I	1.569	1.00
16_M	20_L	1.568	1.00
49_E	52_K	1.555	1.00
243_L	247_P	1.550	1.00
206_A	209_V	1.546	1.00
434_V	438_I	1.536	1.00
77_R	81_H	1.532	1.00
425_V	429_L	1.515	1.00
286_V	290_W	1.515	1.00
208_S	211_V	1.501	1.00
87_S	91_Y	1.500	1.00
305_D	309_S	1.492	1.00
252_M	255_T	1.491	1.00
251_I	255_T	1.488	1.00
254_G	258_A	1.483	1.00
284_A	288_A	1.471	1.00
201_N	204_Q	1.469	1.00
273_L	276_S	1.461	1.00
205_Y	209_V	1.442	1.00
243_L	251_I	1.438	1.00
206_A	212_L	1.430	1.00
391_Q	394_L	1.427	1.00
9_I	42_A	1.415	1.00
98_D	135_V	1.408	1.00
186_S	190_G	1.397	1.00
328_G	332_V	1.387	1.00
207_M	210_E	1.382	1.00
302_H	305_D	1.377	1.00
301_Q	305_D	1.373	1.00
156_V	404_L	1.370	1.00
385_M	392_C	1.369	1.00
250_I	283_I	1.365	1.00
209_V	212_L	1.364	1.00
388_N	391_Q	1.361	1.00
254_G	259_T	1.358	1.00
240_V	247_P	1.355	1.00
236_G	240_V	1.352	1.00
289_F	293_A	1.349	1.00
212_L	215_M	1.343	1.00
237_V	244_I	1.338	1.00
281_L	289_F	1.332	1.00
435_L	439_L	1.325	1.00
448_W	451_W	1.310	1.00
277_P	282_M	1.305	1.00
185_I	446_I	1.305	1.00
253_A	257_S	1.298	1.00
412_S	415_W	1.297	1.00
81_H	309_S	1.295	1.00
26_V	31_A	1.294	1.00
179_T	183_I	1.293	1.00
167_A	171_L	1.291	1.00
17_L	35_V	1.282	1.00
285_L	289_F	1.277	1.00
196_A	199_I	1.272	1.00
207_M	211_V	1.272	1.00
114_I	117_F	1.257	1.00
280_A	291_L	1.257	1.00
281_L	285_L	1.257	1.00
235_P	239_L	1.253	1.00
246_I	284_A	1.248	1.00
248_I	251_I	1.246	1.00
204_Q	209_V	1.244	1.00
239_L	242_S	1.241	1.00
210_E	213_E	1.240	1.00
255_T	258_A	1.232	1.00
134_K	140_P	1.231	1.00
272_Q	276_S	1.228	1.00
186_S	189_V	1.226	1.00
401_F	447_T	1.224	1.00
237_V	251_I	1.223	1.00
170_L	377_G	1.220	1.00
204_Q	211_V	1.218	1.00
247_P	252_M	1.202	1.00
200_I	203_R	1.192	1.00
405_G	440_G	1.191	1.00
105_L	111_F	1.182	1.00
185_I	450_V	1.179	1.00
279_V	285_L	1.175	1.00
198_K	201_N	1.174	1.00
244_I	247_P	1.173	1.00
53_V	329_K	1.171	1.00
204_Q	212_L	1.171	1.00
137_K	207_M	1.170	1.00
77_R	306_I	1.168	1.00
179_T	184_A	1.168	1.00
321_T	412_S	1.167	1.00
85_A	89_A	1.164	1.00
193_G	196_A	1.157	1.00
353_P	448_W	1.153	1.00
433_T	437_T	1.150	1.00
205_Y	210_E	1.146	1.00
183_I	187_I	1.142	1.00
61_V	325_G	1.139	1.00
108_A	111_F	1.135	1.00
187_I	191_V	1.135	1.00
45_I	53_V	1.128	1.00
387_L	390_I	1.127	1.00
278_M	281_L	1.126	1.00
271_L	276_S	1.124	1.00
231_K	234_P	1.123	1.00
56_A	333_E	1.115	1.00
205_Y	212_L	1.115	1.00
29_F	319_L	1.107	1.00
278_M	288_A	1.105	1.00
105_L	109_A	1.105	1.00
426_A	430_K	1.104	1.00
122_F	420_Y	1.102	1.00
176_G	179_T	1.102	1.00
235_P	240_V	1.099	1.00
75_L	284_A	1.098	1.00
90_N	135_V	1.095	1.00
278_M	282_M	1.089	1.00
248_I	252_M	1.088	1.00
57_G	329_K	1.088	1.00
275_G	288_A	1.086	1.00
247_P	250_I	1.084	1.00
178_L	396_T	1.082	1.00
203_R	206_A	1.079	1.00
38_L	42_A	1.077	1.00
113_G	121_G	1.070	1.00
82_S	292_L	1.070	1.00
237_V	242_S	1.066	1.00
211_V	214_Q	1.066	1.00
208_S	212_L	1.061	1.00
199_I	202_K	1.060	1.00
405_G	437_T	1.055	1.00
279_V	283_I	1.055	1.00
275_G	280_A	1.055	1.00
401_F	443_G	1.054	1.00
179_T	182_G	1.044	1.00
109_A	112_L	1.037	1.00
233_N	236_G	1.031	1.00
407_S	411_D	1.030	1.00
35_V	38_L	1.030	1.00
277_P	288_A	1.029	1.00
112_L	186_S	1.029	1.00
287_L	291_L	1.028	1.00
53_V	57_G	1.027	1.00
446_I	450_V	1.027	1.00
242_S	246_I	1.024	1.00
366_Q	375_T	1.022	1.00
277_P	285_L	1.015	1.00
273_L	277_P	1.011	1.00
192_V	195_F	1.009	1.00
180_I	184_A	1.006	1.00
368_S	371_V	1.005	1.00
173_A	178_L	1.003	1.00
196_A	204_Q	0.999	0.99
202_K	205_Y	0.991	0.99
247_P	254_G	0.989	0.99
285_L	291_L	0.986	0.99
154_V	161_H	0.983	0.99
254_G	257_S	0.977	0.99
196_A	434_V	0.976	0.99
43_A	46_P	0.974	0.99
448_W	452_A	0.972	0.99
250_I	254_G	0.970	0.99
105_L	108_A	0.965	0.99
78_M	288_A	0.963	0.99
280_A	292_L	0.963	0.99
13_G	38_L	0.962	0.99
181_I	397_L	0.960	0.99
359_S	372_A	0.960	0.99
9_I	43_A	0.958	0.99
418_T	428_G	0.957	0.99
406_A	433_T	0.957	0.99
84_G	240_V	0.956	0.99
444_F	448_W	0.955	0.99
166_A	170_L	0.955	0.99
183_I	186_S	0.953	0.99
258_A	272_Q	0.950	0.99
154_V	158_V	0.950	0.99
177_W	181_I	0.949	0.99
356_F	444_F	0.947	0.99
115_P	121_G	0.947	0.99
90_N	94_R	0.946	0.99
196_A	438_I	0.943	0.99
280_A	284_A	0.940	0.99
236_G	241_T	0.940	0.99
203_R	212_L	0.939	0.99
234_P	238_A	0.938	0.99
54_M	326_V	0.935	0.99
198_K	202_K	0.935	0.99
249_A	253_A	0.934	0.99
363_R	372_A	0.934	0.99
270_T	274_I	0.932	0.99
279_V	292_L	0.928	0.99
414_F	417_V	0.928	0.99
369_A	407_S	0.923	0.99
233_N	237_V	0.922	0.99
234_P	237_V	0.920	0.99
49_E	53_V	0.919	0.99
67_I	71_L	0.918	0.99
436_T	439_L	0.913	0.99
211_V	215_M	0.912	0.99
253_A	259_T	0.910	0.99
413_G	416_I	0.910	0.99
105_L	112_L	0.906	0.99
229_S	233_N	0.906	0.99
432_W	436_T	0.905	0.99
206_A	211_V	0.904	0.99
10_A	14_V	0.904	0.99
209_V	213_E	0.902	0.99
191_V	195_F	0.897	0.99
166_A	169_G	0.895	0.99
280_A	283_I	0.894	0.99
180_I	183_I	0.890	0.99
363_R	369_A	0.888	0.99
252_M	256_V	0.888	0.99
117_F	121_G	0.887	0.99
352_L	390_I	0.884	0.99
117_F	120_V	0.881	0.99
86_E	232_I	0.880	0.99
385_M	388_N	0.879	0.99
194_Y	198_K	0.876	0.99
52_K	55_I	0.873	0.99
204_Q	210_E	0.872	0.99
443_G	447_T	0.871	0.99
427_D	430_K	0.867	0.99
145_L	149_G	0.866	0.99
201_N	205_Y	0.866	0.99
237_V	247_P	0.858	0.98
39_V	327_F	0.856	0.98
314_A	318_I	0.854	0.98
20_L	34_L	0.854	0.98
164_P	168_A	0.853	0.98
246_I	250_I	0.847	0.98
286_V	292_L	0.847	0.98
364_A	405_G	0.846	0.98
205_Y	215_M	0.844	0.98
255_T	259_T	0.843	0.98
235_P	249_A	0.843	0.98
289_F	292_L	0.840	0.98
238_A	245_V	0.839	0.98
12_A	16_M	0.838	0.98
253_A	258_A	0.838	0.98
107_L	111_F	0.837	0.98
254_G	260_L	0.835	0.98
11_L	15_I	0.835	0.98
174_D	177_W	0.832	0.98
397_L	447_T	0.831	0.98
31_A	35_V	0.830	0.98
369_A	403_G	0.827	0.98
103_A	110_F	0.822	0.98
277_P	286_V	0.822	0.98
120_V	163_G	0.822	0.98
242_S	245_V	0.822	0.98
203_R	207_M	0.820	0.98
288_A	292_L	0.818	0.98
166_A	171_L	0.816	0.98
241_T	259_T	0.815	0.98
204_Q	207_M	0.813	0.98
177_W	393_V	0.812	0.98
277_P	292_L	0.811	0.98
177_W	180_I	0.810	0.98
274_I	278_M	0.807	0.98
153_T	187_I	0.807	0.98
242_S	291_L	0.806	0.98
347_I	352_L	0.805	0.98
279_V	282_M	0.803	0.98
197_A	201_N	0.802	0.98
193_G	197_A	0.801	0.98
145_L	431_T	0.799	0.98
360_L	440_G	0.794	0.97
407_S	432_W	0.793	0.97
381_S	385_M	0.792	0.97
388_N	392_C	0.791	0.97
363_R	411_D	0.791	0.97
204_Q	213_E	0.790	0.97
206_A	213_E	0.786	0.97
77_R	309_S	0.784	0.97
335_G	338_K	0.782	0.97
177_W	183_I	0.780	0.97
233_N	241_T	0.780	0.97
256_V	260_L	0.779	0.97
243_L	250_I	0.773	0.97
247_P	255_T	0.771	0.97
104_A	110_F	0.771	0.97
138_I	142_K	0.769	0.97
209_V	214_Q	0.766	0.97
200_I	207_M	0.766	0.97
148_A	415_W	0.764	0.97
394_L	447_T	0.762	0.97
152_L	436_T	0.761	0.97
256_V	259_T	0.759	0.97
414_F	418_T	0.758	0.97
442_T	446_I	0.755	0.97
239_L	243_L	0.753	0.96
413_G	418_T	0.752	0.96
113_G	116_V	0.751	0.96
271_L	274_I	0.750	0.96
72_G	310_A	0.748	0.96
278_M	290_W	0.747	0.96
329_K	332_V	0.746	0.96
27_Q	30_V	0.742	0.96
276_S	280_A	0.742	0.96
231_K	235_P	0.740	0.96
205_Y	211_V	0.737	0.96
231_K	249_A	0.737	0.96
351_L	395_V	0.736	0.96
133_A	143_F	0.732	0.96
363_R	403_G	0.731	0.96
103_A	191_V	0.730	0.96
88_L	240_V	0.729	0.96
129_I	133_A	0.729	0.96
203_R	208_S	0.728	0.96
373_I	403_G	0.728	0.96
178_L	182_G	0.728	0.96
241_T	245_V	0.728	0.96
241_T	244_I	0.727	0.96
372_A	411_D	0.727	0.96
87_S	237_V	0.726	0.96
240_V	251_I	0.725	0.96
288_A	291_L	0.724	0.96
9_I	13_G	0.724	0.96
289_F	307_M	0.722	0.96
238_A	252_M	0.721	0.95
205_Y	213_E	0.718	0.95
9_I	12_A	0.718	0.95
394_L	450_V	0.717	0.95
178_L	393_V	0.714	0.95
206_A	215_M	0.712	0.95
431_T	434_V	0.712	0.95
360_L	406_A	0.706	0.95
257_S	260_L	0.705	0.95
38_L	41_L	0.703	0.95
175_I	178_L	0.702	0.95
236_G	242_S	0.701	0.95
168_A	175_I	0.701	0.95
347_I	351_L	0.700	0.95
43_A	334_S	0.696	0.95
188_P	191_V	0.694	0.94
39_V	330_V	0.692	0.94
439_L	443_G	0.691	0.94
14_V	17_L	0.690	0.94
121_G	151_M	0.690	0.94
107_L	110_F	0.690	0.94
166_A	374_L	0.689	0.94
245_V	252_M	0.686	0.94
235_P	238_A	0.682	0.94
56_A	59_G	0.682	0.94
201_N	208_S	0.680	0.94
41_L	47_A	0.680	0.94
236_G	244_I	0.675	0.94
84_G	87_S	0.673	0.93
201_N	209_V	0.671	0.93
194_Y	197_A	0.669	0.93
281_L	288_A	0.669	0.93
199_I	207_M	0.668	0.93
369_A	412_S	0.668	0.93
236_G	247_P	0.667	0.93
199_I	205_Y	0.667	0.93
355_A	380_L	0.666	0.93
152_L	404_L	0.665	0.93
20_L	31_A	0.664	0.93
372_A	376_T	0.664	0.93
428_G	432_W	0.664	0.93
243_L	291_L	0.662	0.93
281_L	293_A	0.662	0.93
238_A	260_L	0.661	0.93
209_V	215_M	0.657	0.93
9_I	35_V	0.656	0.93
197_A	200_I	0.655	0.93
188_P	446_I	0.654	0.93
241_T	247_P	0.653	0.92
48_G	52_K	0.651	0.92
186_S	192_V	0.651	0.92
203_R	209_V	0.650	0.92
98_D	136_A	0.649	0.92
147_V	150_I	0.649	0.92
106_T	190_G	0.648	0.92
108_A	112_L	0.648	0.92
366_Q	371_V	0.647	0.92
298_W	303_T	0.646	0.92
446_I	449_C	0.645	0.92
34_L	38_L	0.644	0.92
105_L	110_F	0.643	0.92
397_L	401_F	0.641	0.92
176_G	180_I	0.640	0.92
396_T	439_L	0.639	0.92
157_A	401_F	0.639	0.92
234_P	240_V	0.637	0.92
173_A	396_T	0.636	0.91
164_P	369_A	0.634	0.91
252_M	258_A	0.632	0.91
20_L	26_V	0.631	0.91
300_L	303_T	0.630	0.91
323_A	327_F	0.627	0.91
16_M	19_L	0.624	0.91
39_V	336_V	0.623	0.91
349_L	353_P	0.621	0.90
201_N	207_M	0.621	0.90
355_A	359_S	0.619	0.90
167_A	170_L	0.618	0.90
244_I	248_I	0.618	0.90
37_L	279_V	0.617	0.90
116_V	161_H	0.616	0.90
190_G	194_Y	0.615	0.90
423_L	427_D	0.614	0.90
292_L	303_T	0.611	0.90
288_A	293_A	0.609	0.90
49_E	172_H	0.609	0.90
137_K	205_Y	0.609	0.90
232_I	235_P	0.606	0.89
189_V	442_T	0.605	0.89
363_R	407_S	0.605	0.89
207_M	215_M	0.604	0.89
75_L	285_L	0.602	0.89
279_V	288_A	0.601	0.89
341_A	375_T	0.601	0.89
232_I	239_L	0.600	0.89
274_I	277_P	0.600	0.89
57_G	322_G	0.600	0.89
342_N	346_M	0.600	0.89
236_G	243_L	0.599	0.89
250_I	253_A	0.598	0.89
115_P	162_P	0.597	0.89
289_F	303_T	0.597	0.89
45_I	49_E	0.597	0.89
299_S	303_T	0.596	0.89
234_P	249_A	0.596	0.89
286_V	291_L	0.595	0.89
45_I	50_V	0.593	0.88
231_K	236_G	0.591	0.88
238_A	243_L	0.588	0.88
157_A	443_G	0.588	0.88
348_D	352_L	0.588	0.88
199_I	206_A	0.588	0.88
177_W	182_G	0.586	0.88
149_G	432_W	0.586	0.88
281_L	284_A	0.586	0.88
240_V	250_I	0.584	0.88
77_R	80_E	0.583	0.88
282_M	286_V	0.582	0.87
337_G	341_A	0.582	0.87
113_G	120_V	0.582	0.87
447_T	451_W	0.581	0.87
153_T	439_L	0.581	0.87
293_A	297_G	0.581	0.87
241_T	254_G	0.580	0.87
362_L	376_T	0.578	0.87
44_G	47_A	0.578	0.87
408_H	436_T	0.574	0.87
185_I	188_P	0.574	0.87
126_A	421_L	0.573	0.87
277_P	290_W	0.573	0.87
240_V	244_I	0.572	0.87
298_W	302_H	0.571	0.86
175_I	181_I	0.570	0.86
178_L	184_A	0.568	0.86
250_I	257_S	0.568	0.86
72_G	123_I	0.567	0.86
208_S	213_E	0.567	0.86
302_H	306_I	0.566	0.86
227_K	230_D	0.566	0.86
155_H	159_P	0.565	0.86
255_T	260_L	0.565	0.86
240_V	255_T	0.564	0.86
274_I	281_L	0.563	0.86
253_A	260_L	0.563	0.86
207_M	212_L	0.563	0.86
362_L	366_Q	0.562	0.86
371_V	375_T	0.560	0.85
373_I	376_T	0.559	0.85
311_L	315_A	0.557	0.85
115_P	120_V	0.557	0.85
208_S	215_M	0.556	0.85
178_L	181_I	0.556	0.85
344_L	358_I	0.556	0.85
339_A	342_N	0.555	0.85
418_T	421_L	0.555	0.85
9_I	336_V	0.554	0.85
251_I	257_S	0.553	0.85
139_S	204_Q	0.551	0.84
103_A	106_T	0.550	0.84
398_A	402_G	0.549	0.84
191_V	194_Y	0.547	0.84
433_T	440_G	0.547	0.84
192_V	438_I	0.546	0.84
226_T	232_I	0.545	0.84
348_D	351_L	0.544	0.84
233_N	239_L	0.544	0.84
149_G	197_A	0.543	0.84
200_I	205_Y	0.543	0.84
412_S	418_T	0.542	0.83
280_A	293_A	0.541	0.83
230_D	234_P	0.541	0.83
144_G	423_L	0.540	0.83
195_F	198_K	0.540	0.83
198_K	204_Q	0.535	0.83
44_G	49_E	0.535	0.83
376_T	399_A	0.533	0.82
13_G	43_A	0.533	0.82
145_L	197_A	0.533	0.82
62_L	322_G	0.533	0.82
174_D	178_L	0.531	0.82
156_V	369_A	0.531	0.82
53_V	59_G	0.529	0.82
246_I	249_A	0.529	0.82
145_L	435_L	0.528	0.82
278_M	292_L	0.528	0.82
161_H	373_I	0.527	0.82
99_K	228_L	0.527	0.82
354_A	384_V	0.527	0.82
252_M	259_T	0.526	0.82
155_H	369_A	0.526	0.82
109_A	154_V	0.525	0.82
9_I	38_L	0.525	0.82
272_Q	277_P	0.524	0.81
196_A	201_N	0.523	0.81
153_T	189_V	0.522	0.81
16_M	23_K	0.520	0.81
210_E	214_Q	0.519	0.81
238_A	259_T	0.519	0.81
442_T	445_L	0.519	0.81
305_D	308_G	0.519	0.81
104_A	111_F	0.518	0.81
121_G	163_G	0.518	0.81
416_I	421_L	0.518	0.81
90_N	234_P	0.518	0.81
149_G	435_L	0.518	0.81
243_L	248_I	0.518	0.81
320_V	374_L	0.518	0.81
287_L	290_W	0.516	0.80
356_F	360_L	0.516	0.80
203_R	210_E	0.516	0.80
403_G	407_S	0.516	0.80
185_I	189_V	0.516	0.80
53_V	56_A	0.515	0.80
75_L	288_A	0.515	0.80
242_S	247_P	0.515	0.80
390_I	394_L	0.515	0.80
407_S	436_T	0.515	0.80
181_I	393_V	0.515	0.80
351_L	387_L	0.514	0.80
40_A	50_V	0.513	0.80
393_V	397_L	0.511	0.80
414_F	420_Y	0.511	0.80
380_L	395_V	0.509	0.80
238_A	244_I	0.508	0.79
12_A	15_I	0.507	0.79
364_A	433_T	0.507	0.79
185_I	397_L	0.506	0.79
428_G	431_T	0.506	0.79
129_I	147_V	0.505	0.79
405_G	436_T	0.505	0.79
195_F	203_R	0.504	0.79
279_V	284_A	0.502	0.79
198_K	205_Y	0.502	0.79
142_K	146_P	0.502	0.79
195_F	202_K	0.502	0.79
133_A	138_I	0.502	0.79
56_A	329_K	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r1iA	2	0.9692	100	0.58	Contact Map
4r0cA	3	0.9493	100	0.601	Contact Map
4f35D	2	0.8767	100	0.658	Contact Map
2cfqA	1	0.8172	82.1	0.945	Contact Map
2gfpA	2	0.7775	36.3	0.96	Contact Map
4pypA	1	0.4075	32.9	0.96	Contact Map
4zw9A	1	0.4317	25	0.963	Contact Map
4dx5A	3	0.3546	21.9	0.964	Contact Map
3vouA	4	0.2885	21.3	0.964	Contact Map
3aqpA	1	0.3282	21.3	0.964	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0124 seconds.