YQJH - ECOLI - GREMLIN Contacts

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YQJH - NADPH-dependent ferric-chelate reductase

UniProt:	Q46871	Sequences: MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDGFTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLETLSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYFIWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12953
Length:	254 (235)
Sequences:	2720 (2042)
Seq/√Len:	133.2

ECOLI - YQJH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
146_C	154_L	4.600	1.00
27_R	33_Q	4.325	1.00
36_V	100_A	3.855	1.00
182_Q	197_A	3.584	1.00
24_R	98_E	3.074	1.00
23_L	38_G	3.049	1.00
19_E	123_K	2.943	1.00
171_S	192_N	2.868	1.00
54_S	101_I	2.735	1.00
146_C	150_G	2.695	1.00
93_D	96_R	2.694	1.00
91_L	159_E	2.558	1.00
216_D	244_R	2.437	1.00
141_Y	217_Y	2.421	1.00
148_E	198_H	2.366	1.00
103_F	111_A	2.356	1.00
119_Q	122_D	2.338	1.00
219_I	235_F	2.294	1.00
208_A	238_E	2.286	1.00
234_R	239_Q	2.264	1.00
171_S	194_E	2.188	1.00
21_T	123_K	2.185	1.00
31_G	181_C	2.056	1.00
93_D	100_A	2.020	1.00
25_V	33_Q	1.990	1.00
170_V	191_F	1.986	1.00
105_I	116_M	1.979	1.00
26_E	100_A	1.935	1.00
32_F	183_D	1.898	1.00
175_S	198_H	1.893	1.00
55_K	87_D	1.890	1.00
25_V	35_I	1.839	1.00
36_V	98_E	1.838	1.00
34_R	102_D	1.827	1.00
37_L	101_I	1.798	1.00
33_Q	105_I	1.796	1.00
145_V	207_L	1.791	1.00
24_R	36_V	1.767	1.00
93_D	98_E	1.762	1.00
170_V	188_L	1.726	1.00
39_G	42_L	1.714	1.00
170_V	190_G	1.700	1.00
173_L	210_M	1.694	1.00
187_H	190_G	1.689	1.00
140_A	216_D	1.681	1.00
161_L	170_V	1.664	1.00
225_G	249_A	1.646	1.00
141_Y	215_D	1.643	1.00
154_L	174_V	1.636	1.00
173_L	194_E	1.591	1.00
118_A	122_D	1.560	1.00
207_L	231_L	1.556	1.00
176_V	182_Q	1.550	1.00
221_I	228_V	1.533	1.00
20_L	126_V	1.521	1.00
234_R	238_E	1.515	1.00
20_L	37_L	1.483	1.00
158_L	172_A	1.471	1.00
43_D	97_H	1.464	1.00
56_L	101_I	1.459	1.00
141_Y	213_P	1.430	1.00
53_H	87_D	1.378	1.00
141_Y	171_S	1.361	1.00
155_R	185_L	1.348	1.00
60_Q	63_A	1.343	1.00
221_I	231_L	1.319	1.00
143_L	219_I	1.317	1.00
205_A	209_Q	1.317	1.00
140_A	215_D	1.312	1.00
40_E	43_D	1.311	1.00
91_L	155_R	1.304	1.00
154_L	172_A	1.288	1.00
90_P	99_L	1.284	1.00
107_D	113_G	1.272	1.00
23_L	98_E	1.265	1.00
223_G	228_V	1.250	1.00
208_A	234_R	1.241	1.00
25_V	120_P	1.232	1.00
221_I	247_A	1.222	1.00
167_K	190_G	1.216	1.00
113_G	116_M	1.212	1.00
212_I	239_Q	1.206	1.00
173_L	196_L	1.181	0.99
141_Y	212_I	1.152	0.99
182_Q	195_W	1.147	0.99
223_G	227_V	1.125	0.99
158_L	185_L	1.125	0.99
225_G	252_H	1.120	0.99
36_V	93_D	1.118	0.99
236_E	245_V	1.115	0.99
177_R	181_C	1.101	0.99
37_L	103_F	1.100	0.99
136_P	218_F	1.096	0.99
45_F	128_G	1.096	0.99
22_V	25_V	1.090	0.99
179_N	182_Q	1.085	0.99
56_L	124_L	1.084	0.99
171_S	210_M	1.079	0.99
228_V	247_A	1.078	0.99
35_I	114_W	1.066	0.99
19_E	125_T	1.066	0.99
37_L	126_V	1.064	0.99
241_D	244_R	1.060	0.99
178_D	197_A	1.047	0.99
179_N	197_A	1.040	0.99
187_H	191_F	1.036	0.99
53_H	248_A	1.036	0.99
155_R	183_D	1.035	0.99
161_L	168_P	1.034	0.99
27_R	116_M	1.031	0.98
22_V	35_I	1.030	0.98
236_E	247_A	1.021	0.98
144_Y	157_R	1.016	0.98
151_M	174_V	1.015	0.98
92_Y	99_L	1.011	0.98
176_V	197_A	1.005	0.98
31_G	178_D	1.003	0.98
105_I	115_A	0.996	0.98
73_E	77_W	0.992	0.98
24_R	100_A	0.987	0.98
64_H	68_P	0.983	0.98
29_S	183_D	0.981	0.98
117_Q	122_D	0.978	0.98
162_S	168_P	0.978	0.98
204_D	208_A	0.974	0.98
204_D	230_N	0.974	0.98
167_K	187_H	0.971	0.98
183_D	195_W	0.948	0.97
45_F	90_P	0.947	0.97
240_Y	245_V	0.929	0.97
38_G	41_A	0.923	0.97
26_E	36_V	0.914	0.97
144_Y	154_L	0.911	0.97
219_I	240_Y	0.910	0.97
142_Q	168_P	0.910	0.97
169_Q	190_G	0.901	0.96
141_Y	169_Q	0.898	0.96
24_R	120_P	0.898	0.96
102_D	183_D	0.898	0.96
156_R	160_T	0.894	0.96
32_F	148_E	0.892	0.96
221_I	235_F	0.892	0.96
62_D	65_F	0.890	0.96
176_V	183_D	0.886	0.96
15_L	130_R	0.884	0.96
93_D	97_H	0.876	0.96
58_F	124_L	0.860	0.95
158_L	170_V	0.858	0.95
35_I	120_P	0.857	0.95
144_Y	172_A	0.852	0.95
32_F	104_F	0.850	0.95
99_L	126_V	0.849	0.95
40_E	97_H	0.849	0.95
68_P	71_T	0.848	0.95
113_G	117_Q	0.845	0.95
53_H	157_R	0.844	0.95
52_D	130_R	0.844	0.95
176_V	195_W	0.835	0.95
149_S	223_G	0.831	0.94
212_I	217_Y	0.829	0.94
222_T	248_A	0.827	0.94
175_S	200_E	0.825	0.94
57_F	85_S	0.825	0.94
187_H	193_I	0.821	0.94
16_R	44_G	0.808	0.94
32_F	155_R	0.807	0.94
20_L	124_L	0.803	0.93
87_D	130_R	0.803	0.93
175_S	227_V	0.799	0.93
72_E	76_V	0.798	0.93
163_K	167_K	0.796	0.93
55_K	128_G	0.796	0.93
173_L	206_R	0.789	0.93
103_F	115_A	0.788	0.93
29_S	32_F	0.786	0.93
150_G	154_L	0.781	0.92
178_D	181_C	0.773	0.92
150_G	222_T	0.771	0.92
110_V	113_G	0.767	0.92
158_L	191_F	0.765	0.92
64_H	69_T	0.764	0.92
249_A	252_H	0.756	0.91
207_L	235_F	0.755	0.91
28_I	183_D	0.753	0.91
29_S	181_C	0.752	0.91
20_L	42_L	0.746	0.91
163_K	186_A	0.742	0.90
53_H	130_R	0.739	0.90
178_D	182_Q	0.733	0.90
188_L	191_F	0.724	0.89
27_R	30_A	0.723	0.89
44_G	97_H	0.721	0.89
70_V	74_G	0.721	0.89
157_R	220_W	0.719	0.89
65_F	70_V	0.717	0.89
163_K	188_L	0.716	0.89
162_S	167_K	0.716	0.89
57_F	127_A	0.716	0.89
18_R	44_G	0.715	0.89
52_D	87_D	0.712	0.88
87_D	129_P	0.708	0.88
54_S	126_V	0.707	0.88
170_V	187_H	0.705	0.88
23_L	36_V	0.700	0.88
142_Q	145_V	0.698	0.87
88_Y	104_F	0.698	0.87
72_E	77_W	0.697	0.87
169_Q	192_N	0.696	0.87
21_T	38_G	0.694	0.87
55_K	129_P	0.693	0.87
16_R	41_A	0.691	0.87
112_S	116_M	0.687	0.87
108_G	112_S	0.682	0.86
53_H	129_P	0.679	0.86
148_E	177_R	0.676	0.86
71_T	74_G	0.670	0.85
58_F	84_P	0.669	0.85
217_Y	240_Y	0.663	0.85
152_P	159_E	0.663	0.85
32_F	102_D	0.662	0.85
104_F	112_S	0.660	0.84
35_I	115_A	0.659	0.84
205_A	208_A	0.659	0.84
19_E	41_A	0.657	0.84
227_V	231_L	0.657	0.84
31_G	177_R	0.654	0.84
55_K	228_V	0.652	0.84
87_D	228_V	0.650	0.83
79_E	82_R	0.649	0.83
153_A	220_W	0.649	0.83
50_F	160_T	0.647	0.83
231_L	235_F	0.646	0.83
236_E	239_Q	0.645	0.83
53_H	128_G	0.644	0.83
167_K	189_D	0.643	0.83
35_I	103_F	0.638	0.82
219_I	245_V	0.635	0.82
143_L	207_L	0.634	0.82
58_F	111_A	0.634	0.82
52_D	156_R	0.632	0.82
71_T	76_V	0.630	0.82
177_R	199_D	0.629	0.81
78_P	81_P	0.625	0.81
25_V	115_A	0.624	0.81
53_H	132_S	0.623	0.81
87_D	248_A	0.623	0.81
25_V	119_Q	0.621	0.81
104_F	177_R	0.620	0.80
133_L	142_Q	0.620	0.80
217_Y	244_R	0.619	0.80
15_L	127_A	0.618	0.80
69_T	74_G	0.618	0.80
32_F	181_C	0.618	0.80
213_P	217_Y	0.616	0.80
167_K	170_V	0.615	0.80
135_V	139_Y	0.614	0.80
155_R	159_E	0.609	0.79
37_L	124_L	0.609	0.79
130_R	246_R	0.608	0.79
138_D	244_R	0.608	0.79
194_E	206_R	0.604	0.79
58_F	85_S	0.602	0.79
38_G	98_E	0.602	0.79
143_L	235_F	0.598	0.78
139_Y	244_R	0.598	0.78
102_D	152_P	0.593	0.77
223_G	249_A	0.592	0.77
174_V	185_L	0.592	0.77
103_F	118_A	0.591	0.77
53_H	90_P	0.590	0.77
53_H	131_G	0.589	0.77
224_E	227_V	0.587	0.77
199_D	202_A	0.582	0.76
112_S	115_A	0.581	0.76
42_L	92_Y	0.581	0.76
52_D	132_S	0.581	0.76
53_H	156_R	0.580	0.76
105_I	108_G	0.578	0.76
31_G	110_V	0.578	0.76
28_I	102_D	0.576	0.75
159_E	186_A	0.575	0.75
55_K	85_S	0.570	0.75
134_V	137_E	0.570	0.75
115_A	118_A	0.569	0.75
67_P	125_T	0.566	0.74
246_R	249_A	0.563	0.74
225_G	229_K	0.563	0.74
235_F	239_Q	0.563	0.74
20_L	23_L	0.558	0.73
167_K	188_L	0.554	0.73
111_A	114_W	0.554	0.73
37_L	59_P	0.551	0.72
145_V	203_V	0.550	0.72
107_D	167_K	0.549	0.72
172_A	176_V	0.549	0.72
18_R	128_G	0.548	0.72
65_F	68_P	0.548	0.72
64_H	123_K	0.547	0.72
163_K	189_D	0.545	0.71
204_D	207_L	0.544	0.71
146_C	174_V	0.543	0.71
104_F	116_M	0.541	0.71
56_L	126_V	0.538	0.70
23_L	120_P	0.535	0.70
54_S	129_P	0.535	0.70
162_S	170_V	0.535	0.70
104_F	111_A	0.534	0.70
220_W	223_G	0.534	0.70
38_G	97_H	0.533	0.70
89_T	219_I	0.531	0.69
25_V	118_A	0.531	0.69
161_L	169_Q	0.531	0.69
152_P	220_W	0.530	0.69
172_A	195_W	0.529	0.69
33_Q	116_M	0.528	0.69
52_D	157_R	0.528	0.69
53_H	225_G	0.528	0.69
67_P	70_V	0.527	0.69
150_G	153_A	0.525	0.69
51_D	87_D	0.524	0.68
28_I	75_I	0.522	0.68
212_I	215_D	0.522	0.68
142_Q	218_F	0.522	0.68
65_F	74_G	0.521	0.68
176_V	179_N	0.520	0.68
92_Y	97_H	0.519	0.68
65_F	69_T	0.518	0.68
107_D	116_M	0.518	0.68
60_Q	83_P	0.517	0.67
28_I	32_F	0.517	0.67
53_H	222_T	0.517	0.67
52_D	55_K	0.515	0.67
113_G	220_W	0.513	0.67
133_L	137_E	0.512	0.67
87_D	156_R	0.511	0.67
69_T	75_I	0.511	0.67
140_A	217_Y	0.510	0.66
30_A	181_C	0.509	0.66
194_E	209_Q	0.509	0.66
51_D	133_L	0.508	0.66
179_N	199_D	0.508	0.66
74_G	77_W	0.508	0.66
41_A	44_G	0.506	0.66
153_A	250_Y	0.506	0.66
133_L	157_R	0.505	0.66
106_H	152_P	0.504	0.65
129_P	153_A	0.503	0.65
222_T	232_S	0.503	0.65
156_R	218_F	0.502	0.65
68_P	125_T	0.500	0.65
236_E	242_P	0.500	0.65
189_D	192_N	0.500	0.65

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2gpjA	1	0.8583	100	0.58	Contact Map
4yhbA	1	0.9606	100	0.59	Contact Map
2qdxA	1	0.8583	99.9	0.637	Contact Map
2bgiA	1	0.8543	99.9	0.639	Contact Map
4b4dA	2	0.8543	99.9	0.641	Contact Map
1tvcA	1	0.878	99.9	0.656	Contact Map
1fdrA	1	0.8307	99.9	0.657	Contact Map
4u9uA	1	0.9291	99.9	0.659	Contact Map
2eixA	2	0.878	99.9	0.66	Contact Map
1krhA	1	0.9134	99.9	0.662	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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