GREMLIN Database
YGIQ - UPF0313 protein YgiQ
UniProt: Q46861 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13019
Length: 739 (690)
Sequences: 248 (103)
Seq/√Len: 3.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
100_F205_A8.4211.00
44_S98_N6.0850.98
412_I480_R5.4070.96
90_D93_R5.0220.94
217_I220_V4.9580.93
643_L655_I4.7950.92
440_Y471_H4.2080.86
81_A129_P4.1850.85
409_D412_I3.8810.81
349_M354_A3.8680.80
112_I600_Y3.7830.79
47_I205_A3.7730.79
88_K92_M3.6810.77
20_W25_G3.6250.76
207_R212_E3.3470.69
418_I429_I3.2830.68
409_D480_R3.2470.67
158_I191_M3.1430.64
203_E220_V3.1150.63
428_V489_K3.0620.62
456_L606_N3.0560.62
471_H475_I3.0440.61
408_E480_R3.0230.61
193_M204_V2.9690.59
460_Y533_S2.8630.56
471_H504_D2.8310.55
21_A25_G2.8240.55
508_I549_L2.7760.54
609_T613_T2.7200.52
141_T159_L2.6620.50
149_K157_V2.6330.50
440_Y504_D2.6240.49
65_I69_M2.5930.49
158_I204_V2.5920.48
560_E592_R2.5680.48
534_K626_E2.5410.47
130_D368_A2.4920.46
487_I490_I2.4880.45
241_R623_Y2.4550.45
428_V491_L2.4330.44
29_F363_P2.4230.44
231_L609_T2.4040.43
412_I484_L2.3900.43
20_W24_F2.3860.43
475_I504_D2.3810.42
218_R227_V2.3670.42
117_A600_Y2.3520.42
56_V65_I2.3410.41
204_V220_V2.3310.41
114_R133_A2.3230.41
21_A24_F2.3010.40
373_Y602_S2.2450.39
123_H133_A2.2410.39
360_V373_Y2.2380.39
610_M617_P2.2200.38
353_F602_S2.2070.38
112_I117_A2.1870.37
672_R681_I2.1660.37
672_R680_T2.1620.36
208_L214_I2.1050.35
47_I100_F2.1030.35
117_A487_I2.0940.35
159_L187_S2.0310.33
354_A440_Y2.0250.33
411_I441_M2.0210.33
288_E422_V2.0150.33
299_K623_Y2.0110.33
112_I253_H2.0080.32
152_W187_S1.9990.32
509_K556_Q1.9970.32
527_T540_M1.9610.31
49_L104_T1.9350.31
200_P341_A1.9330.31
234_W405_S1.9210.30
373_Y423_P1.8820.29
142_L183_V1.8640.29
161_G337_I1.8570.29
188_K333_R1.8500.29
293_L334_Y1.8470.29
112_I684_M1.8420.28
65_I602_S1.8320.28
17_P24_F1.8290.28
56_V602_S1.8280.28
354_A413_N1.8260.28
51_T104_T1.8250.28
103_V148_C1.8080.28
130_D133_A1.8050.28
220_V377_R1.8020.28
171_H491_L1.7830.27
322_C496_V1.7800.27
23_C112_I1.7780.27
185_V226_I1.7720.27
318_T606_N1.7720.27
14_F351_S1.7700.27
487_I615_K1.7450.26
241_R299_K1.7390.26
17_P23_C1.7350.26
120_R634_D1.7290.26
197_G200_P1.7230.26
194_F201_L1.7200.26
20_W23_C1.7130.26
193_M197_G1.7120.25
291_Y474_T1.7110.25
56_V227_V1.7090.25
65_I471_H1.7040.25
452_T540_M1.7030.25
615_K621_I1.7010.25
155_V490_I1.6900.25
322_C466_H1.6820.25
193_M200_P1.6640.24
680_T683_E1.6610.24
314_L604_L1.6560.24
448_R455_R1.6480.24
580_V643_L1.6360.24
17_P672_R1.6250.24
23_C600_Y1.6230.24
218_R456_L1.6100.23
322_C449_A1.6060.23
531_P574_T1.6040.23
446_S490_I1.6040.23
56_V493_A1.5990.23
670_S678_A1.5980.23
519_Y564_I1.5970.23
360_V423_P1.5590.22
17_P112_I1.5540.22
253_H600_Y1.5500.22
100_F318_T1.5430.22
217_I551_D1.5400.22
450_E574_T1.5350.22
49_L253_H1.5230.22
655_I664_K1.5140.21
188_K475_I1.5140.21
56_V134_G1.5110.21
615_K627_D1.5100.21
481_A490_I1.4970.21
496_V569_S1.4960.21
349_M440_Y1.4840.21
148_C349_M1.4820.21
496_V549_L1.4750.21
200_P322_C1.4710.21
593_L602_S1.4680.21
22_A25_G1.4680.21
154_D508_I1.4640.20
213_P216_E1.4480.20
90_D560_E1.4450.20
449_A496_V1.4440.20
100_F531_P1.4400.20
503_E542_S1.4360.20
490_I676_V1.4330.20
415_I481_A1.4300.20
237_V286_P1.4250.20
17_P374_E1.4230.20
93_R177_D1.4140.20
153_K493_A1.4110.19
242_L305_V1.4020.19
225_I337_I1.3980.19
250_P286_P1.3850.19
569_S598_N1.3840.19
283_R621_I1.3840.19
408_E476_N1.3760.19
293_L322_C1.3760.19
19_Y44_S1.3740.19
208_L423_P1.3720.19
373_Y504_D1.3710.19
500_I662_M1.3610.19
16_W203_E1.3530.18
145_T226_I1.3520.18
193_M314_L1.3450.18
541_G544_D1.3440.18
334_Y540_M1.3440.18
32_M364_A1.3420.18
171_H605_A1.3410.18
634_D638_R1.3380.18
405_S593_L1.3360.18
609_T638_R1.3310.18
378_F422_V1.3290.18
158_I632_K1.3250.18
574_T631_P1.3200.18
171_H374_E1.3150.18
130_D134_G1.3140.18
120_R636_Q1.3110.18
29_F358_K1.3010.18
417_A421_T1.2950.17
29_F608_T1.2940.17
204_V632_K1.2920.17
241_R624_K1.2920.17
231_L468_D1.2900.17
503_E602_S1.2890.17
552_T556_Q1.2840.17
128_T415_I1.2840.17
555_K560_E1.2820.17
32_M234_W1.2800.17
299_K624_K1.2760.17
450_E640_H1.2740.17
421_T424_G1.2730.17
200_P231_L1.2720.17
250_P674_C1.2680.17
291_Y504_D1.2670.17
335_V402_I1.2660.17
171_H428_V1.2600.17
553_Y621_I1.2570.17
689_R692_R1.2550.17
148_C602_S1.2520.17
171_H593_L1.2490.17
236_G293_L1.2490.17
19_Y98_N1.2490.17
484_L590_R1.2470.17
201_L455_R1.2470.17
616_N626_E1.2470.17
358_K363_P1.2460.17
474_T540_M1.2440.17
402_I450_E1.2430.17
120_R462_D1.2420.17
374_E474_T1.2390.17
314_L614_G1.2370.17
177_D630_V1.2300.16
148_C373_Y1.2300.16
437_A527_T1.2270.16
186_D611_Y1.2240.16
616_N619_A1.2220.16
474_T679_P1.2220.16
183_V465_P1.2180.16
251_I335_V1.2180.16
496_V598_N1.2120.16
274_A277_V1.2060.16
100_F129_P1.2060.16
560_E672_R1.2030.16
227_V314_L1.1990.16
18_Q21_A1.1980.16
318_T415_I1.1970.16
12_D351_S1.1920.16
643_L666_H1.1890.16
380_V419_R1.1890.16
643_L664_K1.1880.16
157_V676_V1.1880.16
450_E605_A1.1840.16
283_R487_I1.1840.16
358_K504_D1.1800.16
604_L630_V1.1790.16
205_A531_P1.1760.16
374_E672_R1.1720.16
252_P256_G1.1690.15
121_L493_A1.1690.15
200_P236_G1.1690.15
176_S183_V1.1650.15
123_H287_W1.1640.15
17_P681_I1.1630.15
123_H474_T1.1630.15
540_M543_Y1.1620.15
100_F345_S1.1610.15
487_I549_L1.1590.15
236_G466_H1.1590.15
148_C624_K1.1540.15
145_T503_E1.1530.15
92_M157_V1.1530.15
467_M613_T1.1520.15
130_D236_G1.1520.15
90_D152_W1.1510.15
313_I609_T1.1500.15
187_S408_E1.1450.15
200_P293_L1.1380.15
377_R643_L1.1340.15
123_H503_E1.1330.15
593_L605_A1.1310.15
630_V650_A1.1290.15
29_F140_A1.1280.15
119_R171_H1.1250.15
194_F314_L1.1230.15
72_A534_K1.1200.15
114_R132_V1.1190.15
293_L341_A1.1100.15
466_H496_V1.1070.15
17_P22_A1.1070.15
193_M405_S1.1040.15
35_E69_M1.1020.15
205_A318_T1.0920.14
236_G322_C1.0880.14
449_A466_H1.0880.14
172_Y177_D1.0860.14
50_V485_K1.0810.14
156_P186_D1.0770.14
364_A484_L1.0760.14
655_I666_H1.0750.14
304_K466_H1.0710.14
462_D593_L1.0700.14
201_L548_E1.0670.14
500_I556_Q1.0660.14
455_R544_D1.0580.14
291_Y335_V1.0560.14
437_A488_K1.0510.14
548_E552_T1.0440.14
207_R217_I1.0380.14
672_R683_E1.0370.14
358_K608_T1.0370.14
100_F238_D1.0360.14
17_P623_Y1.0360.14
20_W26_P1.0320.14
449_A549_L1.0310.14
651_N655_I1.0310.14
321_G325_A1.0300.14
18_Q409_D1.0280.13
304_K322_C1.0270.13
142_L194_F1.0260.13
623_Y681_I1.0260.13
96_K154_D1.0240.13
24_F681_I1.0230.13
467_M544_D1.0220.13
72_A605_A1.0200.13
322_C569_S1.0170.13
491_L517_G1.0160.13
231_L334_Y1.0130.13
154_D332_D1.0120.13
112_I580_V1.0120.13
112_I353_F1.0110.13
27_A31_P1.0100.13
474_T504_D1.0070.13
456_L634_D1.0050.13
217_I616_N1.0040.13
193_M353_F1.0040.13
92_M149_K1.0040.13
148_C632_K1.0020.13
132_V368_A1.0010.13
13_L288_E1.0010.13
65_I633_G1.0000.13
66_C639_L0.9980.13
476_N580_V0.9970.13
306_L636_Q0.9960.13
153_K631_P0.9950.13
443_R474_T0.9920.13
503_E632_K0.9900.13
353_F503_E0.9880.13
467_M513_T0.9870.13
96_K155_V0.9870.13
159_L676_V0.9830.13
49_L674_C0.9830.13
448_R613_T0.9820.13
39_Q412_I0.9820.13
471_H490_I0.9820.13
18_Q22_A0.9820.13
80_I555_K0.9810.13
157_V183_V0.9810.13
253_H337_I0.9780.13
236_G291_Y0.9780.13
643_L672_R0.9780.13
200_P466_H0.9770.13
131_N602_S0.9760.13
194_F282_P0.9750.13
292_V519_Y0.9740.13
377_R655_I0.9740.13
187_S676_V0.9720.13
402_I639_L0.9690.13
18_Q614_G0.9690.13
446_S542_S0.9630.13
56_V153_K0.9590.13
96_K509_K0.9580.13
103_V157_V0.9570.13
318_T456_L0.9530.13
341_A446_S0.9490.12
560_E680_T0.9460.12
171_H318_T0.9440.12
252_P311_S0.9420.12
625_S665_K0.9420.12
251_I619_A0.9390.12
633_G638_R0.9380.12
283_R665_K0.9380.12
415_I608_T0.9380.12
49_L237_V0.9380.12
545_R654_L0.9370.12
157_V242_L0.9360.12
316_H358_K0.9350.12
430_S517_G0.9340.12
275_K292_V0.9340.12
90_D650_A0.9320.12
200_P304_K0.9310.12
377_R424_G0.9310.12
171_H633_G0.9300.12
216_E660_E0.9290.12
471_H553_Y0.9250.12
242_L643_L0.9250.12
240_T624_K0.9240.12
322_C506_R0.9240.12
321_G628_V0.9220.12
325_A628_V0.9220.12
341_A512_A0.9210.12
287_W474_T0.9200.12
476_N480_R0.9200.12
230_A378_F0.9200.12
203_E424_G0.9190.12
276_A281_P0.9160.12
56_V120_R0.9150.12
56_V318_T0.9150.12
234_W445_K0.9140.12
363_P378_F0.9140.12
377_R674_C0.9120.12
119_R640_H0.9100.12
169_T314_L0.9080.12
133_A373_Y0.9050.12
318_T598_N0.9040.12
170_A179_V0.9030.12
119_R224_A0.9020.12
112_I124_D0.8990.12
124_D600_Y0.8990.12
141_T183_V0.8990.12
378_F424_G0.8970.12
263_D612_Y0.8960.12
191_M337_I0.8950.12
369_R460_Y0.8950.12
474_T623_Y0.8940.12
207_R219_D0.8870.12
148_C220_V0.8870.12
409_D417_A0.8850.12
200_P232_P0.8840.12
426_T491_L0.8830.12
322_C341_A0.8820.12
24_F672_R0.8810.12
23_C374_E0.8810.12
622_G625_S0.8810.12
142_L490_I0.8750.12
159_L456_L0.8750.12
89_D297_F0.8740.12
181_R186_D0.8730.12
225_I378_F0.8720.12
227_V602_S0.8700.12
374_E468_D0.8680.11
349_M415_I0.8680.11
17_P20_W0.8670.11
318_T493_A0.8670.11
553_Y635_K0.8670.11
90_D367_N0.8670.11
119_R628_V0.8670.11
201_L655_I0.8660.11
65_I600_Y0.8650.11
28_P31_P0.8640.11
466_H655_I0.8630.11
569_S664_K0.8620.11
208_L217_I0.8590.11
188_K487_I0.8590.11
90_D252_P0.8580.11
217_I377_R0.8570.11
203_E447_P0.8570.11
242_L321_G0.8550.11
241_R296_S0.8540.11
609_T681_I0.8540.11
543_Y547_K0.8540.11
542_S612_Y0.8540.11
353_F373_Y0.8530.11
545_R548_E0.8510.11
467_M490_I0.8510.11
250_P551_D0.8500.11
134_G493_A0.8500.11
291_Y681_I0.8480.11
200_P569_S0.8480.11
660_E665_K0.8470.11
529_E533_S0.8470.11
17_P679_P0.8460.11
657_Q661_A0.8460.11
408_E670_S0.8460.11
493_A517_G0.8450.11
593_L598_N0.8450.11
204_V621_I0.8440.11
87_S90_D0.8440.11
169_T311_S0.8410.11
337_I661_A0.8410.11
391_S459_V0.8390.11
56_V156_P0.8380.11
513_T569_S0.8380.11
351_S354_A0.8350.11
17_P377_R0.8260.11
275_K279_V0.8250.11
321_G450_E0.8240.11
552_T555_K0.8220.11
615_K620_K0.8220.11
48_I80_I0.8210.11
351_S440_Y0.8200.11
228_K318_T0.8200.11
592_R680_T0.8200.11
101_F164_A0.8190.11
152_W590_R0.8180.11
476_N527_T0.8180.11
231_L313_I0.8170.11
134_G233_G0.8170.11
415_I440_Y0.8140.11
103_V409_D0.8130.11
304_K335_V0.8130.11
409_D413_N0.8100.11
25_G374_E0.8060.11
158_I208_L0.8010.11
588_K614_G0.8010.11
443_R462_D0.8000.11
342_I346_T0.8000.11
26_P620_K0.7990.11
19_Y22_A0.7980.11
542_S551_D0.7980.11
200_P617_P0.7970.11
231_L285_K0.7960.11
360_V493_A0.7960.11
508_I540_M0.7950.11
233_G552_T0.7940.11
485_K671_R0.7930.11
277_V624_K0.7930.11
294_L621_I0.7930.11
226_I508_I0.7920.11
552_T625_S0.7920.11
291_Y540_M0.7910.11
155_V631_P0.7900.11
242_L693_N0.7880.11
32_M93_R0.7860.11
145_T149_K0.7850.11
69_M504_D0.7840.11
412_I417_A0.7830.11
284_P413_N0.7820.11
119_R297_F0.7820.11
185_V332_D0.7810.11
592_R672_R0.7790.10
142_L333_R0.7780.10
322_C664_K0.7750.10
447_P614_G0.7740.10
112_I679_P0.7740.10
119_R503_E0.7740.10
79_I639_L0.7740.10
220_V613_T0.7730.10
449_A506_R0.7730.10
158_I214_I0.7720.10
304_K449_A0.7710.10
236_G506_R0.7700.10
600_Y684_M0.7700.10
223_T338_N0.7690.10
301_K620_K0.7670.10
291_Y598_N0.7650.10
621_I627_D0.7650.10
472_E475_I0.7640.10
405_S440_Y0.7630.10
184_L617_P0.7620.10
493_A629_F0.7620.10
415_I612_Y0.7620.10
50_V96_K0.7600.10
148_C353_F0.7600.10
142_L154_D0.7580.10
658_A662_M0.7580.10
226_I314_L0.7570.10
232_P377_R0.7570.10
272_Q409_D0.7570.10
205_A238_D0.7570.10
378_F460_Y0.7550.10
29_F360_V0.7540.10
428_V484_L0.7520.10
141_T176_S0.7520.10
214_I281_P0.7520.10
374_E679_P0.7520.10
17_P600_Y0.7510.10
301_K624_K0.7510.10
81_A475_I0.7510.10
292_V409_D0.7500.10
92_M293_L0.7480.10
322_C598_N0.7480.10
217_I337_I0.7480.10
260_P549_L0.7470.10
341_A466_H0.7470.10
81_A409_D0.7460.10
692_R695_R0.7460.10
169_T620_K0.7450.10
455_R631_P0.7430.10
171_H575_R0.7420.10
112_I683_E0.7410.10
13_L243_D0.7410.10
240_T245_P0.7400.10
275_K278_T0.7400.10
92_M413_N0.7390.10
428_V605_A0.7390.10
129_P380_V0.7370.10
92_M598_N0.7370.10
133_A633_G0.7360.10
49_L691_N0.7360.10
493_A636_Q0.7340.10
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210_M690_Q0.7280.10
236_G449_A0.7280.10
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327_M533_S0.7240.10
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426_T517_G0.7220.10
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506_R604_L0.7020.10
332_D631_P0.7020.10
227_V415_I0.7010.10
437_A450_E0.7010.10
152_W288_E0.7010.10
206_H356_P0.7010.10
197_G204_V0.7000.10
185_V214_I0.7000.10
360_V602_S0.7000.10
217_I297_F0.7000.10
549_L613_T0.6990.10
228_K333_R0.6990.10
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358_K373_Y0.6830.09
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316_H378_F0.5730.08
674_C680_T0.5730.08
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248_I251_I0.5700.08
443_R496_V0.5700.08
13_L508_I0.5680.08
226_I296_S0.5680.08
672_R684_M0.5680.08
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629_F636_Q0.5680.08
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378_F421_T0.5670.08
512_A680_T0.5670.08
314_L355_L0.5670.08
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423_P504_D0.5640.08
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450_E531_P0.5630.08
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171_H244_T0.5620.08
220_V621_I0.5620.08
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322_C655_I0.5610.08
569_S606_N0.5610.08
159_L345_S0.5600.08
152_W621_I0.5600.08
650_A676_V0.5600.08
337_I620_K0.5590.08
161_G203_E0.5590.08
465_P493_A0.5590.08
134_G422_V0.5590.08
96_K369_R0.5580.08
20_W98_N0.5580.08
242_L622_G0.5570.08
283_R292_V0.5570.08
218_R602_S0.5570.08
267_V271_K0.5560.08
233_G638_R0.5560.08
208_L292_V0.5550.08
415_I490_I0.5550.08
313_I611_Y0.5540.08
551_D630_V0.5520.08
293_L466_H0.5520.08
408_E421_T0.5520.08
105_A140_A0.5520.08
228_K423_P0.5510.08
342_I619_A0.5510.08
232_P236_G0.5500.08
247_K374_E0.5490.08
103_V592_R0.5490.08
10_D609_T0.5480.08
100_F111_M0.5480.08
413_N670_S0.5470.08
212_E534_K0.5470.08
156_P517_G0.5470.08
327_M590_R0.5460.08
18_Q377_R0.5460.08
592_R655_I0.5460.08
220_V265_K0.5460.08
13_L504_D0.5450.08
541_G643_L0.5450.08
354_A358_K0.5450.08
413_N692_R0.5450.08
56_V230_A0.5450.08
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281_P284_P0.5430.08
202_V678_A0.5430.08
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465_P676_V0.5410.08
177_D292_V0.5410.08
227_V233_G0.5400.08
374_E377_R0.5400.08
658_A680_T0.5380.08
448_R465_P0.5370.08
80_I94_L0.5370.08
373_Y474_T0.5370.08
231_L286_P0.5370.08
148_C631_P0.5370.08
460_Y472_E0.5360.08
491_L593_L0.5360.08
411_I640_H0.5360.08
575_R658_A0.5350.08
120_R650_A0.5350.08
471_H556_Q0.5350.08
214_I217_I0.5340.08
650_A654_L0.5340.08
487_I529_E0.5340.08
358_K670_S0.5330.08
217_I480_R0.5330.08
218_R237_V0.5330.08
158_I313_I0.5330.08
129_P560_E0.5330.08
145_T148_C0.5330.08
96_K620_K0.5320.08
321_G533_S0.5320.08
678_A692_R0.5310.08
397_E459_V0.5310.08
207_R447_P0.5300.08
148_C354_A0.5300.08
22_A679_P0.5290.08
298_E354_A0.5290.08
121_L474_T0.5280.08
104_T253_H0.5260.08
88_K466_H0.5250.08
104_T600_Y0.5250.08
236_G496_V0.5250.08
536_M618_L0.5250.08
142_L185_V0.5250.08
490_I621_I0.5250.08
686_E698_L0.5240.08
373_Y632_K0.5240.08
287_W598_N0.5240.08
120_R316_H0.5240.08
154_D602_S0.5230.08
24_F673_D0.5220.08
32_M437_A0.5220.08
574_T680_T0.5210.08
131_N483_D0.5200.08
201_L358_K0.5200.08
44_S117_A0.5200.08
229_E650_A0.5200.08
528_E581_N0.5200.08
100_F527_T0.5190.08
201_L496_V0.5190.08
503_E545_R0.5190.08
158_I611_Y0.5180.08
130_D176_S0.5180.08
268_A555_K0.5180.08
430_S493_A0.5180.08
314_L475_I0.5180.08
220_V311_S0.5170.08
405_S504_D0.5170.08
157_V661_A0.5170.08
623_Y672_R0.5170.08
259_L271_K0.5170.08
158_I220_V0.5160.08
351_S555_K0.5160.08
440_Y490_I0.5160.08
157_V620_K0.5160.08
301_K630_V0.5150.08
69_M201_L0.5150.08
226_I602_S0.5150.08
234_W534_K0.5150.08
402_I441_M0.5150.08
26_P112_I0.5140.08
227_V373_Y0.5140.08
443_R472_E0.5140.08
363_P504_D0.5130.08
293_L467_M0.5100.08
483_D598_N0.5100.08
552_T635_K0.5100.08
87_S147_R0.5100.08
614_G657_Q0.5100.08
373_Y682_E0.5090.08
605_A640_H0.5090.08
201_L609_T0.5090.08
446_S577_E0.5090.08
496_V680_T0.5090.08
224_A628_V0.5080.08
313_I638_R0.5080.08
263_D269_P0.5070.08
200_P377_R0.5070.08
684_M689_R0.5070.08
490_I545_R0.5060.08
391_S615_K0.5060.08
200_P512_A0.5050.08
254_P470_N0.5040.08
118_D624_K0.5040.08
194_F256_G0.5040.08
449_A606_N0.5030.08
380_V467_M0.5020.08
374_E542_S0.5020.08
96_K545_R0.5000.08
177_D620_K0.5000.08
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2qgqA 1 0.3545 99.6 0.961 Contact Map
4jc0A 1 0.5413 99.4 0.966 Contact Map
3iixA 1 0.456 99.2 0.968 Contact Map
4u0oB 1 0.3627 98.9 0.972 Contact Map
1r30A 2 0.3857 98.9 0.972 Contact Map
3t7vA 1 0.4344 98.6 0.975 Contact Map
2z2uA 1 0.3694 98.3 0.977 Contact Map
4r33A 2 0.475 98.3 0.977 Contact Map
3rfaA 1 0.4493 98.3 0.977 Contact Map
1oltA 1 0.4506 98.2 0.978 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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