GREMLIN Database
YGFS - Putative electron transport protein YgfS
UniProt: Q46819 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13069
Length: 162 (147)
Sequences: 4280 (2510)
Seq/√Len: 207.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
64_V72_L3.1441.00
90_Q103_I2.7231.00
66_A95_A2.5841.00
72_L81_T2.5041.00
25_A122_Q2.4601.00
127_P130_V2.2561.00
16_R19_E2.2451.00
26_H118_D2.1621.00
60_N65_G2.1481.00
72_L101_I2.1191.00
93_V114_I2.0291.00
130_V138_L2.0231.00
73_T82_N2.0221.00
41_L44_Q2.0111.00
15_C18_C1.9671.00
61_A74_M1.9351.00
5_I119_L1.8821.00
90_Q93_V1.8681.00
75_G80_Q1.8431.00
21_A132_S1.8381.00
73_T80_Q1.8051.00
4_L143_E1.7901.00
78_V119_L1.7821.00
13_I135_T1.7331.00
104_Q115_V1.7321.00
139_Q149_V1.7121.00
121_E125_E1.7011.00
149_V152_Q1.6861.00
66_A91_S1.6841.00
123_R131_E1.6411.00
86_C92_C1.6221.00
67_C92_C1.5501.00
101_I114_I1.5401.00
12_C18_C1.5291.00
12_C15_C1.5031.00
103_I114_I1.4821.00
67_C86_C1.4781.00
82_N85_R1.4671.00
64_V74_M1.4441.00
8_N11_D1.4371.00
149_V153_R1.4081.00
81_T114_I1.4031.00
69_V87_I1.3911.00
145_E148_R1.3761.00
7_V52_P1.3451.00
7_V138_L1.3201.00
80_Q121_E1.3161.00
142_T145_E1.3081.00
75_G125_E1.2971.00
61_A64_V1.2841.00
6_I150_R1.2831.00
104_Q111_R1.2801.00
71_A85_R1.2781.00
143_E147_R1.2781.00
75_G78_V1.2731.00
86_C89_C1.2631.00
34_A115_V1.2631.00
89_C92_C1.2591.00
74_M79_V1.2521.00
25_A128_A1.2461.00
12_C133_C1.2451.00
90_Q114_I1.2441.00
123_R128_A1.2431.00
3_S142_T1.2181.00
78_V124_E1.2061.00
90_Q105_S1.1981.00
69_V72_L1.1971.00
32_L35_D1.1761.00
148_R151_Q1.1741.00
5_I130_V1.1151.00
6_I153_R1.1001.00
67_C89_C1.0971.00
17_T20_V1.0871.00
141_L145_E1.0761.00
15_C133_C1.0741.00
83_S113_Q1.0681.00
26_H122_Q1.0641.00
75_G121_E1.0551.00
139_Q153_R1.0541.00
41_L45_R1.0391.00
91_S94_S1.0281.00
38_L41_L1.0231.00
139_Q150_R1.0031.00
17_T132_S0.9691.00
104_Q112_Q0.9671.00
83_S111_R0.9540.99
105_S110_T0.9530.99
147_R151_Q0.9520.99
147_R152_Q0.9420.99
18_C133_C0.9390.99
68_P87_I0.9390.99
8_N139_Q0.9360.99
39_P43_V0.9350.99
54_M138_L0.9180.99
7_V54_M0.9170.99
119_L140_L0.9140.99
25_A123_R0.9130.99
37_F41_L0.9120.99
148_R152_Q0.9010.99
57_Q79_V0.9000.99
150_R153_R0.8890.99
62_P95_A0.8720.99
13_I134_P0.8680.99
11_D137_A0.8630.99
14_G50_S0.8500.99
124_E140_L0.8450.99
57_Q116_K0.8440.99
93_V103_I0.8420.99
9_P51_A0.8280.99
17_T134_P0.8190.98
146_L150_R0.8160.98
104_Q110_T0.8140.98
32_L36_V0.8070.98
3_S140_L0.8040.98
42_K45_R0.7960.98
103_I112_Q0.7960.98
66_A94_S0.7910.98
115_V118_D0.7860.98
118_D122_Q0.7780.98
52_P138_L0.7730.98
74_M78_V0.7720.98
116_K120_C0.7670.98
53_V56_H0.7620.97
4_L146_L0.7550.97
26_H128_A0.7530.97
146_L149_V0.7410.97
40_R47_D0.7300.97
119_L124_E0.7180.96
5_I54_M0.7160.96
136_Q139_Q0.7110.96
37_F40_R0.7040.96
18_C22_C0.6970.96
122_Q125_E0.6970.96
31_E34_A0.6940.96
87_I91_S0.6880.95
91_S95_A0.6870.95
146_L151_Q0.6870.95
55_C58_C0.6740.95
76_E121_E0.6720.95
14_G18_C0.6660.95
33_N36_V0.6650.95
80_Q118_D0.6640.94
117_C120_C0.6630.94
20_V24_V0.6620.94
17_T135_T0.6530.94
141_L146_L0.6530.94
25_A118_D0.6480.94
76_E125_E0.6430.94
142_T148_R0.6400.93
36_V102_T0.6350.93
93_V105_S0.6350.93
39_P44_Q0.6320.93
30_Q37_F0.6240.92
72_L114_I0.6230.92
27_P30_Q0.6220.92
40_R43_V0.6210.92
95_A100_M0.6190.92
143_E146_L0.6170.92
10_A91_S0.6160.92
38_L46_L0.6160.92
5_I52_P0.6150.92
14_G17_T0.6130.92
21_A25_A0.6100.92
105_S111_R0.6010.91
42_K47_D0.5950.91
57_Q124_E0.5880.90
29_E32_L0.5850.90
68_P92_C0.5830.90
103_I111_R0.5820.90
88_G116_K0.5800.89
54_M119_L0.5770.89
6_I139_Q0.5770.89
58_C97_P0.5760.89
59_E62_P0.5730.89
97_P116_K0.5730.89
71_A74_M0.5710.89
146_L153_R0.5710.89
102_T115_V0.5650.88
5_I56_H0.5630.88
76_E80_Q0.5620.88
23_V28_S0.5560.87
16_R118_D0.5530.87
20_V30_Q0.5510.87
9_P52_P0.5510.87
8_N153_R0.5490.87
28_S34_A0.5480.87
52_P56_H0.5480.87
73_T85_R0.5480.87
64_V79_V0.5470.87
127_P138_L0.5460.87
10_A153_R0.5420.86
24_V30_Q0.5380.86
128_A132_S0.5340.85
11_D136_Q0.5330.85
81_T100_M0.5320.85
78_V121_E0.5270.85
69_V73_T0.5250.84
4_L150_R0.5230.84
41_L46_L0.5220.84
69_V89_C0.5210.84
35_D138_L0.5190.84
13_I17_T0.5150.83
119_L143_E0.5140.83
17_T24_V0.5120.83
102_T105_S0.5120.83
75_G124_E0.5120.83
30_Q33_N0.5110.83
144_R149_V0.5110.83
5_I140_L0.5110.83
13_I16_R0.5110.83
15_C22_C0.5100.83
64_V73_T0.5090.82
61_A79_V0.5070.82
41_L47_D0.5070.82
13_I19_E0.5060.82
3_S76_E0.5030.82
21_A128_A0.5030.82
62_P65_G0.5010.81
81_T101_I0.5010.81
31_E35_D0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1h0hB 1 0.9691 100 0.309 Contact Map
1kqfB 3 0.9753 100 0.311 Contact Map
2ivfB 1 0.9753 100 0.312 Contact Map
1ti6B 2 0.9568 100 0.314 Contact Map
2vpzB 2 0.9691 100 0.358 Contact Map
1q16B 2 0.9753 100 0.447 Contact Map
4z3xE 2 0.9074 99.9 0.459 Contact Map
3mm5B 2 0.9321 99.8 0.604 Contact Map
2fgoA 1 0.4938 99.3 0.713 Contact Map
2zvsA 1 0.4815 99.3 0.714 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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