GHXQ - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

GHXQ - Guanine/hypoxanthine permease GhxQ

UniProt:	Q46817	Sequences: MSGDILQTPDAPKPQGALDNYFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVIFTAISVTGVRTWILRNLPMGIAHGTGIGIGLFLLLIAANGVGMVIKNPIEGLPVALGAFTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIAISIIGLIFDPAVKYHGLVAMPSLTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQIINGGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLLILFLSPLSFLIPGYATAPALMYVGLLMLSNVSKLDFNDFIDAMAGLVCAVFIVLTCNIVTGIMLGFVTLVVGRVFAREWQKLNIGTVIITAALVAFYAGGWAI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13067
Length:	455 (386)
Sequences:	10771 (6148)
Seq/√Len:	312.9

ECOLI - GHXQ GHXP ADEP ADEQ DAUA
BACSU - PBUG YVDB YBAR PBUO
HALSA - Q9HNG4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
121_F	316_G	3.478	1.00
236_V	239_P	3.264	1.00
35_V	345_V	3.238	1.00
167_V	193_S	3.209	1.00
403_F	416_L	3.167	1.00
399_V	420_T	3.068	1.00
82_G	344_T	3.007	1.00
131_S	306_T	2.902	1.00
31_V	341_L	2.707	1.00
79_L	347_G	2.596	1.00
235_L	239_P	2.584	1.00
246_G	251_F	2.489	1.00
337_G	342_T	2.446	1.00
80_L	314_F	2.436	1.00
84_W	310_V	2.431	1.00
137_T	302_G	2.348	1.00
79_L	344_T	2.255	1.00
122_L	267_V	2.250	1.00
173_N	181_A	2.221	1.00
38_G	345_V	2.220	1.00
235_L	240_S	2.171	1.00
73_V	323_A	2.151	1.00
58_K	103_F	2.125	1.00
129_A	133_T	2.123	1.00
332_G	342_T	2.095	1.00
185_F	190_V	2.087	1.00
125_V	129_A	2.086	1.00
197_L	374_Y	2.062	1.00
191_M	195_L	2.013	1.00
381_S	384_S	1.995	1.00
75_G	351_L	1.987	1.00
348_A	352_L	1.967	1.00
400_C	417_G	1.957	1.00
285_V	333_T	1.952	1.00
214_L	220_S	1.949	1.00
430_E	433_K	1.943	1.00
121_F	313_I	1.928	1.00
285_V	329_S	1.923	1.00
221_I	225_I	1.919	1.00
125_V	313_I	1.917	1.00
315_S	320_A	1.897	1.00
216_I	220_S	1.893	1.00
222_I	226_F	1.847	1.00
77_G	311_S	1.844	1.00
248_S	251_F	1.832	1.00
247_K	251_F	1.825	1.00
409_N	412_T	1.822	1.00
178_L	181_A	1.815	1.00
214_L	217_I	1.774	1.00
37_A	337_G	1.759	1.00
244_E	247_K	1.756	1.00
132_V	306_T	1.743	1.00
237_A	240_S	1.741	1.00
128_T	313_I	1.731	1.00
403_F	407_T	1.730	1.00
196_G	219_I	1.710	1.00
31_V	35_V	1.671	1.00
80_L	84_W	1.670	1.00
75_G	347_G	1.656	1.00
90_A	346_V	1.641	1.00
245_D	248_S	1.639	1.00
246_G	249_L	1.629	1.00
345_V	349_L	1.619	1.00
89_M	325_V	1.609	1.00
197_L	370_P	1.609	1.00
196_G	370_P	1.608	1.00
220_S	223_G	1.601	1.00
30_T	338_K	1.591	1.00
200_I	215_V	1.578	1.00
195_L	199_V	1.578	1.00
207_R	210_G	1.566	1.00
244_E	248_S	1.564	1.00
193_S	370_P	1.562	1.00
78_S	347_G	1.560	1.00
126_I	271_V	1.557	1.00
236_V	240_S	1.554	1.00
219_I	223_G	1.543	1.00
33_Q	338_K	1.533	1.00
220_S	224_L	1.529	1.00
99_A	321_A	1.524	1.00
254_D	257_G	1.516	1.00
80_L	307_S	1.510	1.00
219_I	367_A	1.499	1.00
198_A	202_G	1.489	1.00
402_V	406_L	1.478	1.00
37_A	342_T	1.469	1.00
122_L	263_V	1.456	1.00
214_L	218_A	1.453	1.00
391_F	395_M	1.442	1.00
204_E	378_L	1.439	1.00
39_L	349_L	1.424	1.00
314_F	318_V	1.420	1.00
95_I	98_T	1.414	1.00
251_F	254_D	1.414	1.00
31_V	345_V	1.402	1.00
243_G	246_G	1.400	1.00
128_T	306_T	1.396	1.00
27_R	30_T	1.389	1.00
384_S	388_F	1.379	1.00
124_G	313_I	1.369	1.00
130_I	135_V	1.367	1.00
35_V	39_L	1.363	1.00
425_R	433_K	1.340	1.00
105_L	270_L	1.338	1.00
178_L	182_L	1.337	1.00
212_I	216_I	1.326	1.00
192_M	219_I	1.324	1.00
246_G	258_A	1.314	1.00
167_V	369_A	1.312	1.00
42_F	349_L	1.312	1.00
129_A	132_V	1.301	1.00
215_V	219_I	1.300	1.00
126_I	264_L	1.288	1.00
201_F	374_Y	1.287	1.00
179_P	182_L	1.285	1.00
223_G	228_P	1.278	1.00
112_S	115_V	1.277	1.00
247_K	252_S	1.273	1.00
214_L	224_L	1.273	1.00
179_P	183_G	1.267	1.00
381_S	385_K	1.265	1.00
382_N	385_K	1.262	1.00
211_G	214_L	1.259	1.00
239_P	243_G	1.250	1.00
156_G	376_G	1.247	1.00
214_L	227_D	1.246	1.00
77_G	323_A	1.246	1.00
300_N	303_K	1.233	1.00
217_I	220_S	1.231	1.00
82_G	343_A	1.227	1.00
202_G	206_C	1.224	1.00
310_V	314_F	1.220	1.00
197_L	201_F	1.219	1.00
200_I	374_Y	1.214	1.00
246_G	252_S	1.210	1.00
256_M	259_L	1.208	1.00
108_G	111_I	1.208	1.00
105_L	266_S	1.204	1.00
189_P	366_Y	1.202	1.00
119_A	263_V	1.194	1.00
221_I	224_L	1.181	1.00
194_L	198_A	1.180	1.00
258_A	261_P	1.177	1.00
341_L	345_V	1.176	1.00
295_D	333_T	1.176	1.00
398_L	402_V	1.175	1.00
83_L	344_T	1.172	1.00
84_W	307_S	1.172	1.00
34_E	338_K	1.172	1.00
75_G	79_L	1.171	1.00
178_L	183_G	1.169	1.00
188_F	191_M	1.168	1.00
187_S	191_M	1.167	1.00
153_I	401_A	1.166	1.00
216_I	224_L	1.154	1.00
235_L	238_M	1.149	1.00
303_K	306_T	1.146	1.00
216_I	219_I	1.143	1.00
93_C	97_L	1.139	1.00
98_T	270_L	1.138	1.00
57_G	63_P	1.137	1.00
306_T	310_V	1.136	1.00
347_G	351_L	1.136	1.00
167_V	373_M	1.135	1.00
186_T	189_P	1.129	1.00
157_L	405_V	1.128	1.00
32_R	36_L	1.127	1.00
204_E	374_Y	1.124	1.00
423_V	427_F	1.124	1.00
187_S	190_V	1.114	1.00
80_L	310_V	1.105	1.00
177_G	181_A	1.104	1.00
212_I	371_A	1.103	1.00
353_I	356_L	1.100	1.00
160_L	373_M	1.094	1.00
94_A	98_T	1.093	1.00
399_V	403_F	1.092	1.00
50_I	54_G	1.087	1.00
149_H	385_K	1.086	1.00
173_N	177_G	1.085	1.00
190_V	193_S	1.084	1.00
137_T	141_R	1.077	1.00
244_E	251_F	1.075	1.00
165_N	179_P	1.075	1.00
190_V	194_L	1.065	1.00
128_T	309_S	1.065	1.00
195_L	222_I	1.064	1.00
332_G	337_G	1.061	1.00
26_A	31_V	1.059	1.00
277_D	281_T	1.056	1.00
130_I	271_V	1.050	1.00
134_G	138_W	1.047	1.00
344_T	348_A	1.047	1.00
227_D	230_V	1.041	1.00
247_K	253_L	1.040	1.00
342_T	346_V	1.040	1.00
226_F	230_V	1.036	1.00
65_A	321_A	1.033	1.00
274_A	322_P	1.032	1.00
249_L	252_S	1.030	1.00
55_M	95_I	1.023	1.00
251_F	258_A	1.021	1.00
123_M	271_V	1.016	1.00
262_T	265_P	1.016	1.00
126_I	267_V	1.015	1.00
211_G	216_I	1.014	1.00
146_G	393_D	1.013	1.00
352_L	355_F	1.013	1.00
193_S	373_M	1.010	1.00
426_V	431_W	1.008	1.00
189_P	193_S	1.004	1.00
217_I	221_I	1.001	1.00
27_R	339_T	0.999	1.00
126_I	268_L	0.998	1.00
196_G	367_A	0.997	1.00
392_I	428_A	0.995	1.00
128_T	132_V	0.992	1.00
257_G	260_Q	0.992	1.00
134_G	302_G	0.990	1.00
184_A	187_S	0.989	1.00
191_M	194_L	0.986	1.00
37_A	41_T	0.982	1.00
245_D	249_L	0.981	1.00
163_A	373_M	0.971	1.00
214_L	229_A	0.971	1.00
200_I	204_E	0.964	1.00
180_V	183_G	0.961	1.00
404_I	413_G	0.961	1.00
282_I	304_A	0.958	1.00
150_G	400_C	0.953	1.00
89_M	333_T	0.946	1.00
30_T	33_Q	0.945	1.00
93_C	98_T	0.939	1.00
161_L	406_L	0.938	1.00
247_K	258_A	0.937	1.00
228_P	232_Y	0.937	1.00
253_L	257_G	0.936	1.00
123_M	270_L	0.935	1.00
407_T	412_T	0.934	1.00
246_G	253_L	0.933	1.00
424_G	428_A	0.932	1.00
157_L	401_A	0.932	1.00
253_L	256_M	0.931	1.00
251_F	256_M	0.930	1.00
223_G	229_A	0.930	1.00
50_I	331_A	0.924	1.00
222_I	225_I	0.924	1.00
120_V	316_G	0.923	1.00
93_C	328_E	0.922	1.00
118_G	122_L	0.919	1.00
250_I	253_L	0.919	1.00
313_I	316_G	0.917	1.00
240_S	244_E	0.916	1.00
267_V	271_V	0.914	1.00
225_I	229_A	0.910	1.00
383_V	401_A	0.908	1.00
171_I	174_P	0.905	1.00
205_K	209_P	0.903	1.00
345_V	348_A	0.897	1.00
311_S	323_A	0.897	1.00
76_F	314_F	0.897	1.00
254_D	260_Q	0.895	1.00
81_M	92_G	0.895	1.00
59_A	66_V	0.894	1.00
311_S	314_F	0.893	1.00
341_L	344_T	0.893	1.00
364_P	367_A	0.891	1.00
177_G	180_V	0.889	1.00
225_I	228_P	0.887	1.00
310_V	313_I	0.886	1.00
153_I	156_G	0.886	1.00
215_V	220_S	0.885	1.00
201_F	395_M	0.881	1.00
420_T	424_G	0.880	1.00
174_P	177_G	0.878	1.00
397_G	401_A	0.877	1.00
196_G	215_V	0.874	1.00
199_V	215_V	0.873	1.00
390_D	393_D	0.871	1.00
254_D	259_L	0.870	1.00
224_L	227_D	0.869	1.00
123_M	274_A	0.868	1.00
385_K	389_N	0.865	1.00
118_G	255_I	0.864	1.00
201_F	377_L	0.860	1.00
145_M	149_H	0.860	1.00
387_D	394_A	0.858	1.00
213_L	216_I	0.851	1.00
216_I	229_A	0.850	1.00
359_L	362_L	0.847	1.00
65_A	69_A	0.844	1.00
76_F	318_V	0.842	1.00
330_A	334_A	0.839	1.00
253_L	317_L	0.834	1.00
89_M	285_V	0.833	1.00
255_I	259_L	0.826	1.00
210_G	214_L	0.824	1.00
119_A	266_S	0.823	1.00
160_L	376_G	0.823	1.00
239_P	244_E	0.823	1.00
58_K	102_A	0.819	1.00
256_M	261_P	0.817	1.00
94_A	97_L	0.816	1.00
313_I	317_L	0.816	1.00
200_I	212_I	0.813	1.00
380_L	383_V	0.812	1.00
217_I	224_L	0.812	1.00
156_G	380_L	0.811	1.00
204_E	211_G	0.806	1.00
121_F	317_L	0.803	1.00
246_G	250_I	0.803	1.00
33_Q	37_A	0.797	1.00
249_L	254_D	0.793	1.00
161_L	165_N	0.792	1.00
214_L	230_V	0.790	1.00
92_G	308_D	0.790	1.00
203_L	214_L	0.789	1.00
274_A	312_S	0.789	1.00
165_N	172_K	0.787	1.00
193_S	366_Y	0.783	1.00
94_A	324_A	0.781	1.00
52_V	350_F	0.777	1.00
224_L	362_L	0.776	1.00
38_G	42_F	0.776	1.00
248_S	252_S	0.776	1.00
240_S	243_G	0.774	0.99
412_T	415_M	0.774	0.99
87_L	304_A	0.774	0.99
98_T	102_A	0.771	0.99
232_Y	235_L	0.771	0.99
219_I	222_I	0.769	0.99
240_S	246_G	0.767	0.99
34_E	339_T	0.766	0.99
54_G	63_P	0.765	0.99
415_M	419_V	0.764	0.99
102_A	322_P	0.762	0.99
161_L	180_V	0.760	0.99
185_F	188_F	0.760	0.99
52_V	98_T	0.759	0.99
166_G	369_A	0.758	0.99
35_V	341_L	0.754	0.99
131_S	137_T	0.752	0.99
74_A	78_S	0.752	0.99
203_L	211_G	0.751	0.99
123_M	322_P	0.750	0.99
248_S	261_P	0.747	0.99
100_F	103_F	0.744	0.99
214_L	232_Y	0.741	0.99
220_S	227_D	0.740	0.99
212_I	215_V	0.739	0.99
119_A	270_L	0.738	0.99
116_A	120_V	0.738	0.99
195_L	219_I	0.737	0.99
219_I	224_L	0.735	0.99
213_L	220_S	0.734	0.99
84_W	303_K	0.733	0.99
213_L	217_I	0.733	0.99
69_A	113_V	0.731	0.99
154_G	404_I	0.731	0.99
249_L	255_I	0.731	0.99
245_D	251_F	0.731	0.99
393_D	396_A	0.729	0.99
246_G	254_D	0.728	0.99
71_C	75_G	0.726	0.99
61_F	66_V	0.725	0.99
97_L	102_A	0.725	0.99
353_I	360_S	0.723	0.99
114_P	252_S	0.722	0.99
265_P	269_A	0.722	0.99
84_W	306_T	0.720	0.99
218_A	222_I	0.718	0.99
54_G	58_K	0.718	0.99
211_G	215_V	0.717	0.99
392_I	425_R	0.716	0.99
399_V	416_L	0.714	0.99
248_S	256_M	0.712	0.99
26_A	30_T	0.711	0.99
281_T	326_Y	0.710	0.99
425_R	430_E	0.710	0.99
91_I	343_A	0.709	0.99
117_L	120_V	0.707	0.99
384_S	387_D	0.707	0.99
252_S	256_M	0.705	0.99
79_L	83_L	0.704	0.99
248_S	258_A	0.701	0.99
331_A	335_A	0.701	0.99
27_R	300_N	0.701	0.99
38_G	349_L	0.697	0.99
384_S	389_N	0.695	0.99
355_F	358_P	0.693	0.99
152_G	284_A	0.692	0.99
28_G	32_R	0.691	0.99
253_L	258_A	0.691	0.99
227_D	232_Y	0.690	0.99
120_V	322_P	0.688	0.99
212_I	220_S	0.688	0.99
243_G	253_L	0.685	0.99
119_A	123_M	0.680	0.99
154_G	401_A	0.680	0.99
202_G	427_F	0.679	0.99
68_V	354_L	0.679	0.99
314_F	317_L	0.678	0.99
87_L	298_I	0.677	0.99
130_I	305_L	0.676	0.99
131_S	309_S	0.674	0.99
224_L	229_A	0.673	0.99
394_A	398_L	0.673	0.99
392_I	424_G	0.668	0.99
247_K	256_M	0.664	0.98
257_G	261_P	0.663	0.98
244_E	258_A	0.663	0.98
114_P	251_F	0.662	0.98
248_S	257_G	0.662	0.98
255_I	258_A	0.661	0.98
52_V	70_T	0.659	0.98
73_V	77_G	0.658	0.98
126_I	130_I	0.657	0.98
93_C	96_S	0.657	0.98
227_D	231_K	0.657	0.98
244_E	256_M	0.655	0.98
403_F	412_T	0.654	0.98
243_G	248_S	0.654	0.98
96_S	99_A	0.653	0.98
254_D	258_A	0.653	0.98
109_Q	112_S	0.652	0.98
74_A	350_F	0.651	0.98
216_I	227_D	0.651	0.98
263_V	266_S	0.650	0.98
141_R	297_Q	0.649	0.98
256_M	260_Q	0.647	0.98
200_I	370_P	0.646	0.98
55_M	74_A	0.646	0.98
266_S	269_A	0.644	0.98
422_V	426_V	0.642	0.98
247_K	250_I	0.642	0.98
146_G	150_G	0.639	0.98
220_S	363_I	0.639	0.98
87_L	300_N	0.639	0.98
243_G	249_L	0.635	0.98
205_K	208_V	0.635	0.98
81_M	91_I	0.634	0.98
199_V	203_L	0.634	0.98
96_S	101_T	0.631	0.98
217_I	227_D	0.630	0.98
114_P	117_L	0.630	0.98
98_T	123_M	0.629	0.98
161_L	164_A	0.628	0.98
192_M	223_G	0.627	0.98
81_M	307_S	0.627	0.98
205_K	210_G	0.626	0.98
346_V	353_I	0.626	0.98
228_P	231_K	0.624	0.98
134_G	137_T	0.623	0.98
197_L	373_M	0.623	0.98
51_V	346_V	0.622	0.98
148_A	283_R	0.620	0.98
309_S	313_I	0.620	0.98
91_I	323_A	0.619	0.98
37_A	335_A	0.618	0.98
240_S	245_D	0.617	0.98
292_L	298_I	0.616	0.97
220_S	362_L	0.616	0.97
354_L	357_S	0.615	0.97
101_T	270_L	0.615	0.97
220_S	229_A	0.613	0.97
26_A	86_N	0.610	0.97
290_N	299_I	0.609	0.97
416_L	420_T	0.609	0.97
394_A	397_G	0.608	0.97
95_I	325_V	0.606	0.97
94_A	102_A	0.604	0.97
102_A	116_A	0.604	0.97
186_T	190_V	0.604	0.97
425_R	429_R	0.600	0.97
154_G	405_V	0.596	0.97
352_L	356_L	0.595	0.97
122_L	126_I	0.594	0.97
374_Y	378_L	0.594	0.97
111_I	262_T	0.592	0.97
421_L	425_R	0.590	0.97
174_P	179_P	0.589	0.97
127_F	274_A	0.586	0.97
216_I	230_V	0.585	0.97
144_P	421_L	0.584	0.97
103_F	106_V	0.584	0.97
252_S	258_A	0.583	0.96
275_V	305_L	0.583	0.96
209_P	335_A	0.583	0.96
95_I	326_Y	0.580	0.96
32_R	35_V	0.580	0.96
216_I	223_G	0.578	0.96
198_A	201_F	0.577	0.96
251_F	257_G	0.577	0.96
138_W	141_R	0.577	0.96
65_A	106_V	0.576	0.96
206_C	210_G	0.576	0.96
97_L	105_L	0.576	0.96
76_F	315_S	0.575	0.96
124_G	312_S	0.574	0.96
309_S	312_S	0.574	0.96
150_G	397_G	0.572	0.96
102_A	106_V	0.571	0.96
223_G	227_D	0.570	0.96
153_I	380_L	0.568	0.96
278_A	325_V	0.568	0.96
117_L	316_G	0.567	0.96
79_L	82_G	0.567	0.96
392_I	396_A	0.565	0.96
306_T	313_I	0.565	0.96
77_G	315_S	0.564	0.96
65_A	113_V	0.564	0.96
138_W	302_G	0.563	0.96
28_G	31_V	0.562	0.96
255_I	260_Q	0.561	0.96
263_V	267_V	0.561	0.96
89_M	337_G	0.560	0.96
105_L	119_A	0.560	0.96
106_V	116_A	0.558	0.96
69_A	319_G	0.557	0.95
215_V	371_A	0.556	0.95
140_L	143_L	0.556	0.95
171_I	184_A	0.555	0.95
274_A	278_A	0.553	0.95
245_D	250_I	0.553	0.95
160_L	398_L	0.552	0.95
311_S	315_S	0.550	0.95
312_S	322_P	0.548	0.95
153_I	383_V	0.548	0.95
52_V	55_M	0.546	0.95
118_G	263_V	0.545	0.95
199_V	219_I	0.545	0.95
271_V	275_V	0.545	0.95
86_N	307_S	0.542	0.95
281_T	325_V	0.542	0.95
99_A	102_A	0.542	0.95
149_H	382_N	0.541	0.95
243_G	247_K	0.538	0.95
245_D	258_A	0.538	0.95
195_L	218_A	0.536	0.94
36_L	40_T	0.535	0.94
334_A	378_L	0.535	0.94
195_L	198_A	0.531	0.94
81_M	323_A	0.530	0.94
81_M	308_D	0.528	0.94
224_L	228_P	0.527	0.94
108_G	112_S	0.527	0.94
206_C	209_P	0.526	0.94
93_C	102_A	0.526	0.94
387_D	391_F	0.524	0.94
211_G	220_S	0.524	0.94
383_V	388_F	0.524	0.94
250_I	256_M	0.523	0.94
52_V	95_I	0.522	0.94
120_V	270_L	0.521	0.94
211_G	217_I	0.520	0.94
219_I	228_P	0.520	0.94
264_L	267_V	0.518	0.93
71_C	350_F	0.518	0.93
221_I	228_P	0.518	0.93
386_L	394_A	0.515	0.93
218_A	221_I	0.515	0.93
383_V	397_G	0.514	0.93
33_Q	36_L	0.514	0.93
119_A	267_V	0.513	0.93
412_T	416_L	0.511	0.93
214_L	219_I	0.511	0.93
194_L	197_L	0.508	0.93
42_F	350_F	0.506	0.93
396_A	420_T	0.505	0.93
29_S	32_R	0.505	0.93
380_L	401_A	0.504	0.92
104_S	110_Q	0.504	0.92
39_L	345_V	0.503	0.92
250_I	260_Q	0.503	0.92
94_A	328_E	0.502	0.92
275_V	279_T	0.501	0.92
132_V	135_V	0.501	0.92
278_A	324_A	0.500	0.92
217_I	230_V	0.500	0.92

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.8286	100	0.553	Contact Map
3o7qA	1	0.422	17.7	0.969	Contact Map
2zy9A	2	0.2571	16.5	0.969	Contact Map
4u9nA	2	0.2527	15.1	0.97	Contact Map
4us3A	1	0.8154	10.8	0.972	Contact Map
2gfpA	2	0.4308	4.1	0.977	Contact Map
4a82A	2	0.167	4	0.977	Contact Map
4j05A	3	0.433	3.9	0.977	Contact Map
1pw4A	1	0.4396	3.2	0.978	Contact Map
1btsA	1	0.0462	3	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.