GREMLIN Database
YDES - Uncharacterized fimbrial-like protein YdeS
UniProt: P77789 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13801
Length: 176 (163)
Sequences: 3555 (2793)
Seq/√Len: 218.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
100_L114_G3.0241.00
111_S161_N2.9691.00
115_I151_A2.8881.00
61_T64_S2.8511.00
116_E152_R2.8341.00
118_L152_R2.7381.00
85_V173_L2.6771.00
116_E154_K2.6711.00
39_T77_E2.6531.00
101_L127_L2.6101.00
72_Q146_I2.5981.00
41_S76_S2.3721.00
103_L165_V2.3591.00
153_L165_V2.3281.00
112_G160_V2.2811.00
74_T146_I2.1181.00
115_I167_A2.0951.00
122_M150_S2.0341.00
101_L169_A1.9791.00
126_K129_D1.9751.00
60_P64_S1.9741.00
109_T164_L1.9251.00
72_Q148_P1.9221.00
119_D123_R1.8561.00
68_A152_R1.8121.00
116_E124_P1.7841.00
70_P150_S1.7011.00
41_S74_T1.6891.00
100_L154_K1.6851.00
90_N172_T1.6301.00
52_Q69_V1.6151.00
90_N128_N1.5821.00
94_D156_T1.5671.00
61_T155_S1.5581.00
65_T116_E1.5491.00
54_N66_S1.5431.00
41_S44_S1.5381.00
17_T21_L1.5221.00
91_G101_L1.5041.00
99_T126_K1.5021.00
42_S47_F1.4871.00
52_Q165_V1.3651.00
59_F155_S1.3541.00
47_F73_I1.3511.00
44_S74_T1.3351.00
44_S47_F1.3191.00
51_L153_L1.3071.00
32_R53_K1.3041.00
70_P148_P1.2911.00
52_Q67_P1.2841.00
11_L14_G1.2831.00
71_F117_I1.2501.00
49_V71_F1.2471.00
15_L18_Y1.2141.00
86_R174_E1.2101.00
85_V145_N1.2061.00
140_V143_Q1.2031.00
14_G18_Y1.1911.00
100_L116_E1.1851.00
95_A114_G1.1411.00
60_P155_S1.1391.00
155_S160_V1.1371.00
95_A98_N1.1331.00
87_V147_L1.1311.00
51_L165_V1.1181.00
12_C15_L1.0961.00
51_L115_I1.0931.00
17_T20_A1.0781.00
59_F160_V1.0691.00
93_E99_T1.0581.00
10_G13_L1.0581.00
89_F149_Y1.0571.00
117_I169_A1.0561.00
68_A150_S1.0511.00
88_A130_L1.0471.00
59_F113_L1.0361.00
25_S29_I1.0311.00
140_V145_N1.0261.00
89_F117_I1.0251.00
28_K168_S1.0201.00
35_D56_A1.0151.00
73_I171_F1.0101.00
155_S159_S1.0081.00
55_S58_Q1.0071.00
39_T76_S1.0011.00
15_L19_S0.9871.00
120_A148_P0.9831.00
88_A174_E0.9731.00
118_L150_S0.9631.00
94_D98_N0.9561.00
79_S82_T0.9551.00
139_L142_E0.9451.00
94_D97_N0.9391.00
59_F64_S0.9391.00
65_T152_R0.9310.99
108_N164_L0.9260.99
101_L167_A0.9220.99
8_F12_C0.9140.99
20_A23_A0.9030.99
104_D168_S0.8950.99
54_N165_V0.8770.99
113_L153_L0.8750.99
8_F11_L0.8750.99
58_Q66_S0.8550.99
10_G14_G0.8550.99
65_T154_K0.8430.99
13_L17_T0.8280.99
33_V54_N0.8220.99
94_D102_K0.8200.99
75_L145_N0.8200.99
62_T155_S0.8190.99
9_L12_C0.8180.99
11_L18_Y0.8070.99
114_G156_T0.8070.99
25_S171_F0.7980.98
13_L16_T0.7960.98
110_A113_L0.7890.98
33_V160_V0.7840.98
125_V131_H0.7810.98
54_N153_L0.7790.98
16_T19_S0.7780.98
30_S48_T0.7780.98
74_T144_N0.7760.98
117_I127_L0.7740.98
85_V140_V0.7730.98
97_N100_L0.7710.98
93_E127_L0.7650.98
131_H149_Y0.7640.98
59_F156_T0.7610.98
87_V173_L0.7600.98
50_D69_V0.7510.98
30_S50_D0.7500.98
138_P143_Q0.7460.98
8_F15_L0.7410.97
103_L108_N0.7410.97
131_H134_M0.7360.97
104_D166_R0.7350.97
54_N59_F0.7350.97
138_P142_E0.7350.97
92_I102_K0.7320.97
65_T118_L0.7280.97
68_A118_L0.7250.97
37_G79_S0.7240.97
47_F171_F0.7210.97
118_L124_P0.7190.97
26_V46_N0.7180.97
62_T158_K0.7140.97
8_F14_G0.7120.97
129_D132_A0.7040.97
56_A160_V0.7030.97
89_F171_F0.7010.97
12_C16_T0.6960.96
62_T112_G0.6940.96
14_G17_T0.6900.96
64_S155_S0.6900.96
103_L166_R0.6870.96
51_L69_V0.6850.96
155_S158_K0.6850.96
9_L16_T0.6810.96
50_D153_L0.6810.96
33_V103_L0.6770.96
113_L160_V0.6770.96
115_I165_V0.6760.96
127_L149_Y0.6750.96
52_Q166_R0.6730.96
88_A129_D0.6730.96
35_D79_S0.6710.96
134_M159_S0.6700.95
62_T157_Q0.6700.95
138_P141_P0.6640.95
9_L21_L0.6630.95
13_L19_S0.6570.95
91_G168_S0.6530.95
28_K48_T0.6500.95
18_Y21_L0.6390.94
103_L109_T0.6380.94
43_D47_F0.6350.94
89_F173_L0.6350.94
42_S45_L0.6310.94
20_A24_D0.6280.94
127_L167_A0.6250.94
10_G22_S0.6200.93
62_T160_V0.6170.93
37_G153_L0.6120.93
51_L151_A0.6100.93
56_A162_P0.6100.93
16_T21_L0.6090.93
139_L144_N0.6050.92
28_K46_N0.6020.92
121_N134_M0.6010.92
19_S23_A0.5970.92
139_L145_N0.5920.92
51_L71_F0.5860.91
103_L110_A0.5850.91
35_D83_T0.5800.91
62_T65_T0.5790.91
27_I89_F0.5780.91
112_G157_Q0.5770.91
46_N171_F0.5770.91
99_T124_P0.5730.90
11_L15_L0.5710.90
90_N170_T0.5700.90
84_G133_G0.5690.90
10_G16_T0.5690.90
34_L79_S0.5640.90
72_Q93_E0.5600.89
51_L54_N0.5600.89
91_G94_D0.5600.89
153_L166_R0.5590.89
84_G139_L0.5580.89
51_L116_E0.5570.89
49_V151_A0.5570.89
42_S76_S0.5550.89
98_N101_L0.5530.89
118_L154_K0.5510.88
22_S25_S0.5490.88
125_V149_Y0.5490.88
99_T114_G0.5450.88
12_C21_L0.5450.88
98_N102_K0.5430.88
112_G156_T0.5410.88
94_D114_G0.5340.87
51_L152_R0.5330.87
103_L113_L0.5310.87
104_D109_T0.5300.86
122_M132_A0.5300.86
48_T170_T0.5280.86
66_S153_L0.5270.86
123_R132_A0.5260.86
27_I169_A0.5240.86
9_L13_L0.5230.86
130_L174_E0.5230.86
58_Q67_P0.5200.85
36_Y57_R0.5200.85
22_S31_G0.5200.85
96_E99_T0.5190.85
112_G158_K0.5160.85
66_S152_R0.5120.85
32_R72_Q0.5110.84
28_K166_R0.5080.84
62_T156_T0.5040.84
37_G58_Q0.5030.83
80_K142_E0.5020.83
65_T68_A0.5000.83
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jmrA 1 0.8807 100 0.217 Contact Map
2xg5B 1 0.7898 100 0.241 Contact Map
2jtyA 1 0.8864 100 0.253 Contact Map
2uy6B 2 0.8125 100 0.269 Contact Map
1pdkB 1 0.8011 100 0.288 Contact Map
3bwuF 1 0.7273 100 0.322 Contact Map
2w07B 1 0.6648 99.9 0.354 Contact Map
3bfqG 1 0.75 99.9 0.362 Contact Map
4dwhB 1 0.767 99.9 0.362 Contact Map
5afoA 1 0.9602 99.9 0.366 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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