GREMLIN Database
YDJI - Uncharacterized protein YdjI
UniProt: P77704 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13485
Length: 278 (270)
Sequences: 3946 (2036)
Seq/√Len: 123.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
160_E164_R3.9491.00
39_E265_L3.3061.00
39_E261_K3.2821.00
11_D15_K3.0101.00
109_F160_E2.8631.00
42_S273_S2.6071.00
109_F113_I2.5751.00
159_A163_E2.5541.00
40_A269_K2.5171.00
35_D261_K2.4501.00
93_W128_I2.4301.00
193_K197_D2.4081.00
38_E73_T2.4051.00
118_E121_D2.3651.00
90_H122_F2.3571.00
108_D111_E2.3501.00
188_N191_V2.3001.00
33_V44_V2.2821.00
102_R115_L2.2781.00
243_E247_Q2.2681.00
174_I192_V2.2441.00
213_D270_L2.2191.00
48_F97_M2.1771.00
40_A265_L2.1151.00
11_D17_Y2.1021.00
114_R118_E2.0901.00
240_A259_A2.0211.00
5_I77_I2.0051.00
40_A274_D1.9571.00
124_H168_D1.9471.00
189_F218_T1.9461.00
258_K262_E1.9271.00
193_K222_L1.9261.00
8_W77_I1.8901.00
212_S215_D1.8821.00
261_K265_L1.8511.00
10_N14_N1.8511.00
117_K121_D1.8331.00
94_T122_F1.7901.00
159_A198_A1.7791.00
13_T225_A1.7671.00
5_I169_S1.7671.00
6_R10_N1.7561.00
218_T221_S1.7251.00
111_E114_R1.7221.00
90_H94_T1.7211.00
34_I72_A1.7141.00
269_K274_D1.7061.00
104_A107_F1.6601.00
120_V130_V1.6521.00
156_D198_A1.6161.00
21_H47_S1.6081.00
268_I274_D1.5851.00
79_H99_S1.5551.00
94_T126_L1.5491.00
240_A243_E1.5451.00
157_Q160_E1.5401.00
193_K218_T1.5331.00
189_F222_L1.5131.00
24_V46_I1.5121.00
44_V76_V1.5111.00
239_V243_E1.4851.00
110_E164_R1.4841.00
107_F111_E1.4701.00
203_L224_I1.4661.00
31_M257_R1.4581.00
38_E72_A1.4441.00
218_T222_L1.4321.00
34_I76_V1.4121.00
262_E265_L1.4051.00
13_T196_R1.4021.00
194_R197_D1.3991.00
154_D157_Q1.3821.00
122_F126_L1.3821.00
109_F157_Q1.3611.00
30_L68_M1.3611.00
63_H67_S1.3431.00
221_S272_G1.3351.00
66_V70_Q1.3311.00
213_D266_E1.3301.00
86_M90_H1.3051.00
86_M118_E1.2921.00
20_A264_A1.2911.00
176_N211_I1.2761.00
242_K245_Q1.2551.00
259_A262_E1.2541.00
63_H66_V1.2491.00
263_R266_E1.2461.00
35_D257_R1.2420.99
191_V195_V1.2370.99
30_L65_M1.2340.99
41_K73_T1.2160.99
24_V30_L1.2090.99
36_A264_A1.2080.99
36_A40_A1.2070.99
121_D125_P1.2030.99
255_E258_K1.2010.99
50_T88_I1.1920.99
59_E91_N1.1900.99
107_F115_L1.1820.99
24_V33_V1.1790.99
241_V256_V1.1790.99
117_K164_R1.1770.99
220_I271_F1.1740.99
110_E114_R1.1720.99
213_D217_K1.1640.99
116_T132_A1.1550.99
109_F164_R1.1400.99
37_A44_V1.1380.99
16_H221_S1.1270.99
162_V201_V1.1230.99
36_A261_K1.1220.99
230_H234_C1.1220.99
86_M122_F1.1170.99
59_E71_K1.1150.99
110_E160_E1.1040.99
191_V194_R1.1020.99
66_V78_T1.1000.99
194_R198_A1.0980.99
199_V203_L1.0970.99
62_S78_T1.0940.99
100_L123_F1.0860.99
100_L119_A1.0860.99
36_A265_L1.0820.99
119_A130_V1.0720.98
115_L118_E1.0680.98
265_L269_K1.0590.98
87_E91_N1.0520.98
190_E194_R1.0500.98
100_L130_V1.0490.98
113_I164_R1.0450.98
229_I271_F1.0420.98
50_T85_S1.0380.98
32_G260_V1.0370.98
11_D14_N1.0360.98
90_H126_L1.0320.98
262_E266_E1.0310.98
236_A263_R1.0240.98
93_W122_F1.0240.98
93_W126_L1.0150.98
258_K261_K1.0120.98
196_R225_A1.0110.98
7_Y11_D1.0090.98
104_A115_L0.9940.98
20_A268_I0.9840.97
67_S70_Q0.9760.97
139_N142_V0.9760.97
266_E270_L0.9760.97
37_A268_I0.9730.97
227_I271_F0.9700.97
48_F61_F0.9670.97
25_W52_F0.9640.97
20_A271_F0.9600.97
172_V195_V0.9570.97
93_W123_F0.9560.97
190_E193_K0.9490.97
188_N194_R0.9470.97
69_A72_A0.9460.97
30_L46_I0.9400.97
72_A76_V0.9300.96
217_K221_S0.9300.96
158_A199_V0.9290.96
9_E169_S0.9270.96
155_P198_A0.9270.96
205_L219_A0.9240.96
60_D68_M0.9240.96
25_W29_M0.9200.96
241_V252_L0.9170.96
132_A167_C0.9130.96
56_T61_F0.9130.96
98_N129_P0.9090.96
8_W19_I0.9060.96
268_I273_S0.9030.96
16_H225_A0.9030.96
33_V264_A0.8960.95
189_F215_D0.8960.95
132_A161_F0.8930.95
65_M78_T0.8920.95
111_E115_L0.8890.95
152_Y191_V0.8760.95
17_Y42_S0.8750.95
153_T158_A0.8750.95
49_G52_F0.8660.95
180_V235_Q0.8660.95
38_E74_V0.8630.94
174_I205_L0.8620.94
155_P194_R0.8600.94
216_I227_I0.8510.94
216_I271_F0.8480.94
37_A74_V0.8480.94
85_S88_I0.8410.94
248_P251_H0.8410.94
216_I220_I0.8360.93
217_K272_G0.8340.93
49_G230_H0.8340.93
42_S272_G0.8320.93
124_H127_G0.8290.93
62_S66_V0.8280.93
43_P75_P0.8280.93
264_A268_I0.8260.93
22_F264_A0.8250.93
158_A195_V0.8120.92
136_H150_Y0.8110.92
36_A268_I0.8110.92
122_F125_P0.8100.92
22_F44_V0.8070.92
255_E259_A0.7970.92
100_L128_I0.7930.92
7_Y10_N0.7910.91
242_K246_D0.7870.91
84_R106_A0.7870.91
48_F53_V0.7870.91
116_T120_V0.7860.91
26_N29_M0.7860.91
160_E163_E0.7850.91
240_A256_V0.7790.91
47_S230_H0.7770.91
134_L162_V0.7750.91
268_I275_G0.7730.90
244_N247_Q0.7720.90
243_E246_D0.7680.90
27_A64_M0.7670.90
102_R119_A0.7640.90
9_E19_I0.7630.90
217_K270_L0.7630.90
47_S79_H0.7580.90
52_F230_H0.7580.90
119_A122_F0.7560.89
49_G250_L0.7540.89
108_D114_R0.7530.89
156_D159_A0.7520.89
162_V199_V0.7500.89
85_S89_I0.7470.89
5_I129_P0.7460.89
22_F33_V0.7440.89
62_S97_M0.7410.89
23_N49_G0.7400.88
123_F128_I0.7340.88
120_V124_H0.7330.88
212_S216_I0.7310.88
232_E267_K0.7300.88
192_V224_I0.7250.87
237_A253_E0.7250.87
41_K275_G0.7240.87
145_E150_Y0.7210.87
153_T172_V0.7110.86
92_A97_M0.7100.86
176_N187_L0.7050.86
134_L161_F0.7050.86
237_A256_V0.7000.86
233_L260_V0.6990.85
13_T200_S0.6960.85
192_V222_L0.6960.85
120_V166_G0.6940.85
172_V192_V0.6920.85
195_V199_V0.6910.85
9_E129_P0.6870.84
25_W230_H0.6860.84
25_W49_G0.6840.84
153_T195_V0.6780.84
155_P191_V0.6780.84
260_V264_A0.6770.84
22_F268_I0.6740.83
10_N13_T0.6730.83
245_Q252_L0.6730.83
8_W11_D0.6720.83
238_M245_Q0.6720.83
5_I8_W0.6710.83
240_A244_N0.6710.83
28_E237_A0.6680.83
220_I223_G0.6680.83
149_G154_D0.6670.83
181_Y223_G0.6640.82
77_I129_P0.6640.82
169_S204_V0.6640.82
147_L150_Y0.6590.82
134_L158_A0.6590.82
51_G250_L0.6590.82
152_Y188_N0.6580.82
214_A217_K0.6570.82
109_F134_L0.6560.82
214_A218_T0.6520.81
240_A255_E0.6510.81
254_R258_K0.6500.81
102_R107_F0.6490.81
24_V61_F0.6490.81
91_N95_H0.6450.81
45_I77_I0.6450.81
5_I45_I0.6430.80
244_N255_E0.6420.80
31_M35_D0.6420.80
197_D200_S0.6370.80
181_Y185_P0.6360.80
69_A76_V0.6320.79
57_S60_D0.6320.79
83_G89_I0.6310.79
42_S275_G0.6290.79
216_I229_I0.6230.78
17_Y272_G0.6230.78
53_V88_I0.6210.78
144_E147_L0.6190.78
130_V167_C0.6170.78
34_I46_I0.6150.77
50_T84_R0.6110.77
162_V167_C0.6090.77
67_S71_K0.6070.76
138_G208_A0.6060.76
167_C201_V0.6060.76
235_Q239_V0.6050.76
5_I9_E0.6020.76
62_S95_H0.6010.76
34_I74_V0.6010.76
132_A165_T0.5960.75
263_R267_K0.5960.75
38_E41_K0.5920.75
86_M119_A0.5910.75
115_L119_A0.5900.74
66_V69_A0.5890.74
266_E269_K0.5880.74
174_I222_L0.5870.74
25_W249_F0.5860.74
86_M89_I0.5850.74
183_S231_T0.5830.74
89_I119_A0.5810.73
177_Q185_P0.5790.73
113_I160_E0.5790.73
229_I232_E0.5750.73
209_S232_E0.5740.72
216_I270_L0.5740.72
23_N55_N0.5730.72
14_N194_R0.5730.72
32_G257_R0.5710.72
140_E147_L0.5710.72
93_W100_L0.5700.72
129_P169_S0.5690.72
42_S268_I0.5690.72
196_R200_S0.5680.72
251_H255_E0.5670.72
154_D191_V0.5660.71
25_W48_F0.5660.71
64_M67_S0.5650.71
58_F91_N0.5620.71
112_N135_G0.5620.71
32_G36_A0.5610.71
12_A17_Y0.5610.71
104_A132_A0.5610.71
187_L219_A0.5610.71
61_F64_M0.5600.71
16_H196_R0.5590.70
77_I98_N0.5580.70
217_K220_I0.5580.70
26_N249_F0.5550.70
61_F65_M0.5540.70
88_I91_N0.5530.70
153_T161_F0.5510.69
195_V203_L0.5510.69
30_L64_M0.5500.69
27_A56_T0.5480.69
134_L154_D0.5460.69
5_I98_N0.5430.68
110_E113_I0.5420.68
113_I165_T0.5400.68
14_N247_Q0.5390.68
52_F248_P0.5380.68
157_Q164_R0.5370.67
241_V253_E0.5360.67
208_A229_I0.5340.67
254_R257_R0.5330.67
87_E90_H0.5310.67
144_E150_Y0.5300.66
215_D218_T0.5290.66
78_T98_N0.5270.66
62_S69_A0.5270.66
224_I227_I0.5270.66
132_A154_D0.5250.66
29_M52_F0.5240.66
90_H125_P0.5230.65
136_H191_V0.5220.65
19_I129_P0.5220.65
249_F252_L0.5200.65
72_A75_P0.5170.65
156_D160_E0.5160.64
174_I219_A0.5160.64
116_T165_T0.5150.64
44_V268_I0.5140.64
229_I267_K0.5130.64
84_R88_I0.5130.64
114_R164_R0.5120.64
258_K269_K0.5120.64
180_V232_E0.5120.64
144_E148_A0.5110.64
109_F170_L0.5110.64
36_A44_V0.5090.63
117_K120_V0.5070.63
234_C249_F0.5070.63
131_E226_K0.5060.63
8_W225_A0.5040.63
93_W124_H0.5040.63
51_G248_P0.5040.63
253_E256_V0.5040.63
49_G55_N0.5030.62
29_M260_V0.5030.62
234_C238_M0.5010.62
20_A47_S0.5000.62
163_E200_S0.5000.62
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1gvfA 3 0.9748 100 0.048 Contact Map
3n9rA 3 0.964 100 0.049 Contact Map
1rvgA 3 0.9928 100 0.053 Contact Map
4to8A 2 0.9748 100 0.058 Contact Map
2iswA 2 0.9496 100 0.06 Contact Map
3pm6A 2 0.9856 100 0.098 Contact Map
3elfA 4 0.9568 100 0.098 Contact Map
1dosA 2 0.9424 100 0.114 Contact Map
3qm3A 4 0.9784 100 0.118 Contact Map
3txvA 2 0.8813 100 0.241 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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