SUFD - ECOLI - GREMLIN Contacts

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SUFD - FeS cluster assembly protein SufD

UniProt:	P77689	Sequences: MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGAR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13963
Length:	423 (394)
Sequences:	3174 (1802)
Seq/√Len:	90.8

ECOLI - SUFD SUFB
BACSU - SUFD SUFB
HALSA - Q9HRV6 Q9HRV5
SULSO - Q97ZI1 Q97ZI0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
147_R	182_E	5.064	1.00
235_L	239_A	4.627	1.00
144_R	179_E	4.559	1.00
144_R	178_A	4.414	1.00
177_L	181_A	4.394	1.00
177_L	213_L	4.320	1.00
209_A	237_E	4.033	1.00
179_E	209_A	3.872	1.00
209_A	236_A	3.706	1.00
381_N	384_D	3.645	1.00
210_N	238_D	3.620	1.00
207_V	211_A	3.443	1.00
182_E	212_H	3.436	1.00
276_P	309_G	3.358	1.00
108_V	140_I	3.317	1.00
179_E	208_A	3.206	1.00
294_F	325_K	3.179	1.00
207_V	241_A	3.105	1.00
109_S	112_D	3.054	1.00
238_D	265_N	3.052	1.00
233_L	241_A	3.014	1.00
180_G	210_N	3.009	1.00
141_A	178_A	2.987	1.00
382_Q	386_Q	2.975	1.00
264_E	294_F	2.919	1.00
183_A	213_L	2.820	1.00
207_V	239_A	2.748	1.00
274_A	303_T	2.726	1.00
264_E	293_G	2.662	1.00
289_E	320_A	2.624	1.00
212_H	240_T	2.570	1.00
205_I	213_L	2.519	1.00
145_G	180_G	2.494	1.00
130_T	172_R	2.475	1.00
324_I	353_A	2.407	1.00
23_T	27_P	2.385	1.00
234_L	262_N	2.349	1.00
153_L	188_H	2.237	1.00
290_H	297_S	2.204	1.00
267_T	296_N	2.185	1.00
325_K	355_D	2.178	1.00
177_L	211_A	2.169	1.00
310_R	342_E	2.130	1.00
310_R	344_D	2.125	1.00
107_E	141_A	2.103	1.00
207_V	213_L	2.073	1.00
308_K	340_L	2.072	1.00
34_Q	38_R	2.068	1.00
99_D	103_G	2.064	1.00
376_R	382_Q	2.047	1.00
240_T	267_T	2.025	1.00
32_H	131_E	2.018	1.00
207_V	235_L	1.976	1.00
237_E	264_E	1.964	1.00
28_Q	131_E	1.959	1.00
262_N	291_N	1.927	1.00
152_L	183_A	1.913	1.00
329_Q	359_S	1.912	1.00
264_E	292_K	1.873	1.00
305_V	309_G	1.872	1.00
175_L	185_V	1.855	1.00
177_L	183_A	1.853	1.00
250_G	253_L	1.805	1.00
142_V	183_A	1.776	1.00
298_R	327_D	1.752	1.00
197_H	225_S	1.710	1.00
261_L	295_C	1.701	1.00
141_A	176_D	1.666	1.00
367_I	389_I	1.642	1.00
51_Y	54_L	1.597	1.00
107_E	143_K	1.552	1.00
90_D	159_Q	1.526	1.00
345_T	362_A	1.517	1.00
276_P	282_C	1.507	1.00
33_L	37_L	1.497	1.00
319_V	358_C	1.476	1.00
296_N	327_D	1.472	1.00
25_R	114_R	1.468	1.00
104_S	149_A	1.456	0.99
279_N	308_K	1.447	0.99
291_N	320_A	1.442	0.99
215_H	241_A	1.435	0.99
265_N	294_F	1.433	0.99
260_Q	289_E	1.422	0.99
266_S	292_K	1.413	0.99
266_S	295_C	1.407	0.99
35_Q	38_R	1.386	0.99
324_I	355_D	1.383	0.99
27_P	31_Q	1.381	0.99
311_A	343_V	1.379	0.99
292_K	295_C	1.361	0.99
26_S	30_Q	1.355	0.99
117_L	120_A	1.347	0.99
272_S	301_H	1.347	0.99
259_T	268_L	1.332	0.99
113_D	139_H	1.327	0.99
332_N	345_T	1.324	0.99
99_D	102_E	1.311	0.99
326_T	356_V	1.311	0.99
322_H	353_A	1.304	0.99
236_A	263_G	1.302	0.99
237_E	265_N	1.294	0.99
281_V	312_V	1.292	0.99
156_H	189_F	1.278	0.99
305_V	343_V	1.254	0.98
236_A	239_A	1.253	0.98
184_T	216_I	1.250	0.98
304_I	394_A	1.248	0.98
49_W	52_T	1.237	0.98
52_T	252_V	1.232	0.98
278_K	307_D	1.228	0.98
317_I	328_G	1.225	0.98
184_T	214_Q	1.216	0.98
109_S	136_S	1.215	0.98
273_L	394_A	1.208	0.98
106_Y	142_V	1.200	0.98
175_L	205_I	1.199	0.98
47_E	51_Y	1.196	0.98
284_T	301_H	1.190	0.98
103_G	106_Y	1.186	0.98
31_Q	34_Q	1.183	0.98
34_Q	37_L	1.180	0.98
87_V	90_D	1.169	0.98
209_A	238_D	1.164	0.98
323_A	326_T	1.162	0.97
314_N	346_K	1.157	0.97
142_V	148_P	1.139	0.97
319_V	326_T	1.138	0.97
47_E	50_K	1.124	0.97
252_V	281_V	1.118	0.97
130_T	202_R	1.116	0.97
235_L	241_A	1.110	0.97
35_Q	39_T	1.109	0.97
73_Q	76_A	1.103	0.97
112_D	116_G	1.101	0.97
53_P	56_G	1.092	0.96
105_G	146_Q	1.091	0.96
170_H	200_G	1.088	0.96
260_Q	291_N	1.087	0.96
210_N	265_N	1.085	0.96
235_L	259_T	1.085	0.96
81_L	84_V	1.080	0.96
221_E	227_H	1.079	0.96
23_T	26_S	1.077	0.96
295_C	326_T	1.077	0.96
106_Y	146_Q	1.076	0.96
25_R	134_A	1.065	0.96
345_T	364_V	1.061	0.96
118_P	121_I	1.056	0.96
214_Q	242_F	1.055	0.96
380_I	388_M	1.050	0.95
51_Y	60_S	1.048	0.95
31_Q	35_Q	1.047	0.95
204_T	232_D	1.042	0.95
28_Q	31_Q	1.042	0.95
54_L	57_L	1.039	0.95
110_I	121_I	1.039	0.95
142_V	177_L	1.039	0.95
71_P	74_R	1.032	0.95
120_A	139_H	1.032	0.95
148_P	183_A	1.031	0.95
54_L	126_F	1.027	0.95
82_D	150_K	1.026	0.95
259_T	270_I	1.014	0.94
145_G	210_N	1.013	0.94
237_E	263_G	1.009	0.94
215_H	243_S	1.008	0.94
70_S	73_Q	1.007	0.94
53_P	60_S	1.004	0.94
143_K	146_Q	1.001	0.94
317_I	326_T	1.000	0.94
41_L	126_F	1.000	0.94
334_N	345_T	1.000	0.94
234_L	260_Q	0.993	0.94
157_I	190_V	0.991	0.94
172_R	202_R	0.989	0.94
285_R	314_N	0.984	0.94
173_H	203_F	0.982	0.93
124_E	256_N	0.980	0.93
318_N	352_Y	0.980	0.93
111_N	136_S	0.976	0.93
30_Q	34_Q	0.970	0.93
107_E	139_H	0.969	0.93
165_E	195_A	0.969	0.93
319_V	330_M	0.965	0.93
131_E	172_R	0.960	0.93
236_A	262_N	0.959	0.93
293_G	324_I	0.957	0.93
53_P	57_L	0.949	0.92
53_P	59_N	0.949	0.92
176_D	206_N	0.947	0.92
86_L	138_T	0.937	0.92
187_E	215_H	0.932	0.92
108_V	152_L	0.931	0.92
126_F	228_F	0.930	0.91
256_N	285_R	0.929	0.91
44_R	53_P	0.928	0.91
401_L	407_K	0.926	0.91
213_L	241_A	0.926	0.91
172_R	204_T	0.924	0.91
244_H	271_N	0.923	0.91
289_E	318_N	0.923	0.91
128_H	204_T	0.917	0.91
147_R	180_G	0.917	0.91
255_H	284_T	0.912	0.91
36_L	125_V	0.910	0.91
67_G	71_P	0.909	0.91
27_P	30_Q	0.903	0.90
351_I	356_V	0.903	0.90
140_I	152_L	0.902	0.90
349_L	358_C	0.901	0.90
407_K	411_L	0.901	0.90
40_G	125_V	0.901	0.90
114_R	117_L	0.898	0.90
261_L	292_K	0.897	0.90
337_M	373_F	0.897	0.90
139_H	176_D	0.894	0.90
143_K	176_D	0.892	0.90
47_E	52_T	0.889	0.90
312_V	346_K	0.889	0.90
246_F	410_V	0.885	0.89
319_V	351_I	0.884	0.89
43_T	46_H	0.883	0.89
308_K	338_G	0.880	0.89
171_Y	201_A	0.878	0.89
181_A	213_L	0.876	0.89
52_T	281_V	0.875	0.89
235_L	268_L	0.872	0.89
327_D	357_K	0.872	0.89
330_M	349_L	0.868	0.88
50_K	53_P	0.867	0.88
251_A	279_N	0.867	0.88
353_A	356_V	0.863	0.88
174_H	204_T	0.863	0.88
69_I	73_Q	0.859	0.88
179_E	210_N	0.857	0.88
178_A	208_A	0.854	0.88
50_K	54_L	0.842	0.87
74_R	77_L	0.842	0.87
316_L	348_Q	0.842	0.87
189_F	227_H	0.842	0.87
174_H	206_N	0.835	0.86
306_S	338_G	0.834	0.86
330_M	358_C	0.834	0.86
144_R	209_A	0.833	0.86
88_F	93_Y	0.832	0.86
219_A	249_G	0.830	0.86
48_N	54_L	0.824	0.86
305_V	311_A	0.822	0.86
74_R	83_S	0.820	0.85
261_L	365_G	0.817	0.85
236_A	266_S	0.815	0.85
177_L	207_V	0.815	0.85
333_N	363_T	0.814	0.85
299_Q	317_I	0.814	0.85
348_Q	352_Y	0.810	0.85
75_D	79_L	0.809	0.85
285_R	334_N	0.808	0.85
106_Y	148_P	0.807	0.84
404_E	407_K	0.799	0.84
76_A	79_L	0.798	0.84
49_W	54_L	0.796	0.84
286_T	299_Q	0.791	0.83
205_I	241_A	0.790	0.83
217_K	229_A	0.789	0.83
294_F	324_I	0.789	0.83
156_H	187_E	0.789	0.83
305_V	341_A	0.789	0.83
137_V	173_H	0.788	0.83
404_E	408_Q	0.786	0.83
92_R	95_P	0.785	0.83
145_G	179_E	0.783	0.83
328_G	358_C	0.781	0.82
68_E	71_P	0.779	0.82
156_H	173_H	0.778	0.82
286_T	301_H	0.773	0.82
199_T	221_E	0.772	0.82
41_L	54_L	0.769	0.82
129_L	404_E	0.768	0.81
277_V	280_E	0.767	0.81
217_K	227_H	0.766	0.81
269_R	298_R	0.765	0.81
208_A	236_A	0.762	0.81
117_L	121_I	0.761	0.81
217_K	221_E	0.761	0.81
293_G	323_A	0.760	0.81
262_N	292_K	0.756	0.80
49_W	59_N	0.755	0.80
375_L	389_I	0.755	0.80
351_I	358_C	0.753	0.80
348_Q	359_S	0.751	0.80
256_N	314_N	0.750	0.80
114_R	121_I	0.749	0.80
276_P	305_V	0.747	0.80
110_I	114_R	0.744	0.79
275_M	414_I	0.743	0.79
287_W	318_N	0.741	0.79
265_N	292_K	0.738	0.79
49_W	57_L	0.737	0.79
148_P	151_P	0.736	0.79
66_A	70_S	0.736	0.79
277_V	307_D	0.736	0.79
131_E	202_R	0.735	0.79
219_A	250_G	0.730	0.78
100_A	103_G	0.729	0.78
288_L	297_S	0.728	0.78
319_V	327_D	0.727	0.78
271_N	400_A	0.726	0.78
318_N	350_E	0.724	0.77
292_K	322_H	0.724	0.77
362_A	390_I	0.722	0.77
249_G	253_L	0.722	0.77
33_L	133_L	0.720	0.77
395_A	411_L	0.718	0.77
233_L	259_T	0.718	0.77
314_N	348_Q	0.717	0.77
230_H	258_S	0.717	0.77
299_Q	302_K	0.716	0.77
158_T	169_A	0.714	0.76
87_V	98_S	0.713	0.76
187_E	217_K	0.713	0.76
275_M	306_S	0.711	0.76
266_S	293_G	0.710	0.76
172_R	365_G	0.709	0.76
35_Q	122_Q	0.709	0.76
142_V	181_A	0.707	0.76
325_K	353_A	0.706	0.76
335_L	390_I	0.706	0.76
104_S	148_P	0.705	0.76
29_A	32_H	0.704	0.75
84_V	150_K	0.703	0.75
325_K	354_D	0.702	0.75
89_V	93_Y	0.702	0.75
113_D	137_V	0.701	0.75
304_I	335_L	0.700	0.75
72_Q	77_L	0.700	0.75
335_L	342_E	0.698	0.75
316_L	350_E	0.698	0.75
66_A	72_Q	0.697	0.75
219_A	280_E	0.697	0.75
101_T	148_P	0.695	0.75
41_L	49_W	0.695	0.75
32_H	128_H	0.693	0.74
321_Q	324_I	0.692	0.74
319_V	350_E	0.690	0.74
270_I	288_L	0.682	0.73
143_K	178_A	0.681	0.73
124_E	230_H	0.679	0.73
117_L	139_H	0.676	0.73
281_V	310_R	0.676	0.73
52_T	312_V	0.673	0.72
264_E	325_K	0.672	0.72
324_I	354_D	0.671	0.72
307_D	338_G	0.671	0.72
54_L	60_S	0.669	0.72
88_F	156_H	0.669	0.72
375_L	380_I	0.669	0.72
138_T	173_H	0.668	0.72
293_G	299_Q	0.667	0.72
234_L	259_T	0.667	0.72
395_A	399_E	0.666	0.71
82_D	86_L	0.665	0.71
183_A	207_V	0.664	0.71
138_T	154_L	0.664	0.71
301_H	332_N	0.663	0.71
358_C	361_G	0.663	0.71
238_D	264_E	0.662	0.71
380_I	385_A	0.662	0.71
247_L	284_T	0.662	0.71
323_A	353_A	0.660	0.71
113_D	120_A	0.660	0.71
89_V	94_V	0.658	0.70
219_A	247_L	0.655	0.70
209_A	265_N	0.655	0.70
33_L	36_L	0.654	0.70
21_E	30_Q	0.654	0.70
253_L	282_C	0.653	0.70
78_A	83_S	0.651	0.70
88_F	91_G	0.647	0.69
351_I	355_D	0.646	0.69
261_L	266_S	0.645	0.69
51_Y	57_L	0.645	0.69
326_T	353_A	0.640	0.68
272_S	284_T	0.640	0.68
123_A	127_L	0.639	0.68
75_D	78_A	0.638	0.68
206_N	234_L	0.636	0.68
73_Q	77_L	0.636	0.68
255_H	301_H	0.633	0.68
129_L	170_H	0.632	0.67
220_F	413_R	0.632	0.67
352_Y	365_G	0.631	0.67
209_A	239_A	0.630	0.67
66_A	69_I	0.630	0.67
70_S	77_L	0.630	0.67
47_E	54_L	0.630	0.67
89_V	157_I	0.625	0.67
110_I	134_A	0.624	0.66
308_K	341_A	0.623	0.66
188_H	220_F	0.623	0.66
203_F	244_H	0.621	0.66
316_L	330_M	0.620	0.66
72_Q	76_A	0.619	0.66
349_L	356_V	0.619	0.66
121_I	139_H	0.619	0.66
270_I	328_G	0.619	0.66
319_V	356_V	0.618	0.66
231_N	257_T	0.617	0.66
223_P	278_K	0.616	0.65
398_T	414_I	0.615	0.65
359_S	365_G	0.613	0.65
321_Q	340_L	0.612	0.65
233_L	239_A	0.612	0.65
86_L	92_R	0.611	0.65
58_I	414_I	0.611	0.65
353_A	358_C	0.611	0.65
314_N	343_V	0.608	0.64
203_F	215_H	0.606	0.64
82_D	85_R	0.606	0.64
312_V	315_G	0.605	0.64
403_D	406_L	0.604	0.64
326_T	358_C	0.604	0.64
321_Q	352_Y	0.604	0.64
154_L	157_I	0.604	0.64
259_T	365_G	0.602	0.64
303_T	332_N	0.601	0.64
237_E	294_F	0.601	0.64
346_K	359_S	0.601	0.64
241_A	259_T	0.601	0.64
328_G	334_N	0.600	0.63
47_E	324_I	0.597	0.63
365_G	368_D	0.596	0.63
315_G	350_E	0.595	0.63
110_I	139_H	0.595	0.63
90_D	192_L	0.595	0.63
285_R	394_A	0.594	0.63
367_I	386_Q	0.592	0.62
319_V	354_D	0.590	0.62
205_I	215_H	0.589	0.62
93_Y	98_S	0.587	0.62
70_S	76_A	0.583	0.61
85_R	99_D	0.583	0.61
141_A	146_Q	0.582	0.61
57_L	60_S	0.581	0.61
219_A	245_S	0.581	0.61
358_C	368_D	0.581	0.61
130_T	201_A	0.581	0.61
61_Q	383_Q	0.581	0.61
175_L	366_R	0.580	0.61
33_L	112_D	0.580	0.61
107_E	117_L	0.580	0.61
209_A	266_S	0.579	0.61
235_L	266_S	0.577	0.60
50_K	60_S	0.576	0.60
218_L	248_L	0.576	0.60
28_Q	32_H	0.575	0.60
229_A	245_S	0.575	0.60
51_Y	59_N	0.575	0.60
107_E	116_G	0.574	0.60
285_R	345_T	0.570	0.59
266_S	291_N	0.565	0.59
263_G	414_I	0.565	0.59
69_I	74_R	0.565	0.59
350_E	353_A	0.564	0.59
210_N	240_T	0.563	0.59
136_S	139_H	0.562	0.58
113_D	121_I	0.562	0.58
319_V	346_K	0.562	0.58
258_S	289_E	0.562	0.58
74_R	79_L	0.561	0.58
387_Q	415_G	0.561	0.58
291_N	318_N	0.561	0.58
303_T	311_A	0.560	0.58
49_W	358_C	0.560	0.58
290_H	350_E	0.560	0.58
216_I	402_R	0.559	0.58
242_F	269_R	0.559	0.58
153_L	364_V	0.558	0.58
36_L	128_H	0.558	0.58
89_V	159_Q	0.557	0.58
246_F	398_T	0.557	0.58
205_I	233_L	0.556	0.58
214_Q	402_R	0.555	0.57
176_D	204_T	0.554	0.57
205_I	226_H	0.554	0.57
130_T	136_S	0.553	0.57
235_L	261_L	0.553	0.57
36_L	40_G	0.552	0.57
332_N	361_G	0.552	0.57
102_E	105_G	0.550	0.57
313_F	346_K	0.550	0.57
29_A	128_H	0.550	0.57
208_A	211_A	0.549	0.57
314_N	334_N	0.549	0.57
176_D	208_A	0.549	0.57
245_S	255_H	0.548	0.57
210_N	237_E	0.547	0.56
247_L	274_A	0.547	0.56
353_A	361_G	0.546	0.56
106_Y	183_A	0.545	0.56
350_E	356_V	0.545	0.56
281_V	301_H	0.544	0.56
301_H	314_N	0.542	0.56
232_D	258_S	0.541	0.56
62_F	65_I	0.540	0.55
87_V	155_M	0.539	0.55
168_T	198_F	0.539	0.55
368_D	371_Q	0.539	0.55
197_H	221_E	0.538	0.55
392_A	397_L	0.538	0.55
88_F	136_S	0.538	0.55
410_V	418_L	0.538	0.55
201_A	229_A	0.537	0.55
32_H	35_Q	0.537	0.55
354_D	357_K	0.537	0.55
199_T	227_H	0.536	0.55
118_P	139_H	0.535	0.55
63_V	72_Q	0.535	0.55
291_N	322_H	0.534	0.55
313_F	356_V	0.534	0.55
88_F	98_S	0.533	0.54
156_H	371_Q	0.533	0.54
147_R	267_T	0.533	0.54
38_R	95_P	0.532	0.54
123_A	232_D	0.532	0.54
334_N	343_V	0.530	0.54
288_L	299_Q	0.529	0.54
328_G	332_N	0.529	0.54
78_A	82_D	0.529	0.54
334_N	364_V	0.528	0.54
74_R	78_A	0.528	0.54
67_G	70_S	0.528	0.54
130_T	200_G	0.528	0.54
228_F	254_R	0.527	0.54
40_G	50_K	0.525	0.53
358_C	389_I	0.525	0.53
51_Y	254_R	0.524	0.53
227_H	253_L	0.524	0.53
126_F	200_G	0.522	0.53
254_R	283_D	0.522	0.53
326_T	407_K	0.522	0.53
363_T	394_A	0.522	0.53
285_R	328_G	0.522	0.53
285_R	332_N	0.521	0.53
249_G	280_E	0.520	0.53
231_N	241_A	0.519	0.53
56_G	59_N	0.518	0.52
353_A	363_T	0.517	0.52
343_V	348_Q	0.517	0.52
54_L	59_N	0.516	0.52
300_L	397_L	0.516	0.52
284_T	345_T	0.516	0.52
200_G	328_G	0.515	0.52
196_R	224_L	0.515	0.52
29_A	137_V	0.514	0.52
45_K	51_Y	0.513	0.52
86_L	405_G	0.513	0.52
155_M	190_V	0.513	0.52
283_D	314_N	0.513	0.52
113_D	117_L	0.513	0.52
214_Q	244_H	0.513	0.52
297_S	317_I	0.512	0.52
140_I	148_P	0.511	0.51
66_A	74_R	0.511	0.51
322_H	325_K	0.511	0.51
277_V	306_S	0.511	0.51
139_H	406_L	0.509	0.51
80_T	86_L	0.508	0.51
55_E	59_N	0.508	0.51
265_N	296_N	0.508	0.51
273_L	300_L	0.508	0.51
85_R	95_P	0.507	0.51
160_G	209_A	0.507	0.51
38_R	113_D	0.507	0.51
320_A	353_A	0.507	0.51
59_N	288_L	0.507	0.51
319_V	355_D	0.507	0.51
274_A	366_R	0.506	0.51
255_H	365_G	0.506	0.51
68_E	72_Q	0.505	0.51
338_G	341_A	0.505	0.51
285_R	301_H	0.504	0.50
290_H	352_Y	0.504	0.50
257_T	301_H	0.504	0.50
232_D	362_A	0.502	0.50
22_G	26_S	0.502	0.50
189_F	217_K	0.502	0.50
302_K	331_T	0.502	0.50
321_Q	353_A	0.500	0.50
412_A	415_G	0.500	0.50
334_N	353_A	0.500	0.50

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vh4A	2	0.9764	100	0.133	Contact Map
4dn7A	2	0.9054	100	0.301	Contact Map
4xfmA	2	0.1702	18.9	0.975	Contact Map
1rq8A	1	0.13	18.5	0.975	Contact Map
1ifyA	1	0.1158	16.5	0.975	Contact Map
3ezqB	1	0.1371	15.4	0.976	Contact Map
1wjiA	1	0.1324	14.8	0.976	Contact Map
4v0qA	2	0.13	13	0.976	Contact Map
3dqqA	2	0.182	12.7	0.976	Contact Map
4edgA	1	0.1891	12.2	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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