GREMLIN Database
YDEP - Protein YdeP
UniProt: P77561 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13798
Length: 759 (654)
Sequences: 9422 (5857)
Seq/√Len: 229.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
111_Q124_P5.6121.00
132_D561_A4.3771.00
686_V705_S4.3121.00
693_N756_E4.0061.00
549_K557_G3.6851.00
690_E757_P3.5091.00
297_R353_D3.3901.00
137_R140_S3.2011.00
693_N700_D3.1731.00
289_G337_I3.1221.00
335_K345_Q3.1091.00
642_L684_C3.1031.00
680_Q714_V3.0741.00
553_A557_G3.0651.00
312_D316_Q2.9081.00
539_G542_K2.8771.00
133_E505_Y2.8771.00
293_L297_R2.8741.00
320_V619_S2.7841.00
126_S129_Q2.7651.00
291_M325_L2.7621.00
695_I756_E2.7551.00
134_I505_Y2.7181.00
131_F561_A2.7161.00
215_I287_L2.6741.00
292_R296_E2.6601.00
695_I754_E2.6501.00
679_K713_V2.6391.00
488_H503_H2.6061.00
116_D123_K2.5921.00
338_E345_Q2.5801.00
239_K354_A2.5661.00
141_Y146_Q2.5581.00
274_A350_E2.5571.00
291_M388_M2.5511.00
619_S623_N2.5101.00
210_D360_R2.5031.00
242_A272_A2.4821.00
692_V705_S2.4531.00
131_F557_G2.4431.00
344_S347_Q2.4391.00
286_L341_S2.4381.00
676_M755_L2.4361.00
125_L505_Y2.4331.00
696_A753_V2.4091.00
114_K133_E2.4041.00
345_Q349_A2.4011.00
347_Q350_E2.3531.00
114_K505_Y2.3291.00
676_M705_S2.3261.00
681_A707_R2.3251.00
671_R704_S2.3181.00
111_Q546_V2.2581.00
333_E336_D2.2561.00
114_K125_L2.2561.00
208_K395_P2.2521.00
310_L315_I2.2501.00
308_S312_D2.2191.00
138_L458_A2.2151.00
295_I322_F2.1611.00
134_I487_V2.1141.00
695_I700_D2.1071.00
297_R309_L2.1021.00
209_C212_V2.0991.00
313_E317_T2.0921.00
688_N707_R2.0861.00
457_R484_D2.0781.00
684_C754_E2.0761.00
557_G561_A2.0681.00
683_I713_V2.0341.00
211_L354_A2.0291.00
133_E137_R2.0011.00
472_D737_D1.9991.00
350_E354_A1.9721.00
141_Y458_A1.9671.00
276_Y343_L1.9591.00
276_Y351_L1.9561.00
686_V692_V1.9471.00
544_A548_L1.9381.00
674_V716_Y1.9371.00
274_A347_Q1.9241.00
116_D119_S1.9171.00
572_Y575_E1.9161.00
286_L348_I1.9151.00
674_V692_V1.8961.00
125_L133_E1.8801.00
233_L238_A1.8781.00
691_R702_K1.8671.00
460_I489_V1.8561.00
703_R718_M1.8431.00
310_L322_F1.8401.00
674_V694_L1.8361.00
292_R334_W1.8231.00
211_L241_I1.8141.00
295_I326_R1.8081.00
124_P546_V1.8021.00
679_K682_K1.7841.00
327_R330_L1.7821.00
132_D136_A1.7661.00
114_K123_K1.7601.00
693_N702_K1.7571.00
297_R349_A1.7221.00
282_G340_I1.7201.00
688_N706_R1.7181.00
687_K690_E1.7011.00
477_A481_T1.6981.00
110_T545_G1.6851.00
674_V718_M1.6841.00
394_K397_A1.6791.00
309_L356_A1.6751.00
296_E330_L1.6751.00
234_V273_S1.6661.00
274_A354_A1.6641.00
293_L349_A1.6601.00
243_I286_L1.6461.00
337_I348_I1.6351.00
146_Q457_R1.6251.00
478_V481_T1.6241.00
557_G560_Q1.6221.00
516_D539_G1.6171.00
293_L353_D1.6151.00
421_S425_L1.6121.00
294_L310_L1.6101.00
355_Y389_K1.6091.00
315_I322_F1.6011.00
590_E593_D1.5951.00
113_L506_I1.5951.00
319_T624_F1.5891.00
483_L486_A1.5741.00
338_E344_S1.5731.00
293_L334_W1.5731.00
353_D357_A1.5631.00
355_Y361_T1.5631.00
510_L550_S1.5411.00
125_L129_Q1.5391.00
676_M716_Y1.5391.00
129_Q133_E1.5341.00
142_S457_R1.5341.00
691_R704_S1.5331.00
642_L716_Y1.5311.00
213_I351_L1.5251.00
335_K349_A1.5231.00
294_L356_A1.5101.00
295_I329_V1.5001.00
338_E348_I1.4921.00
716_Y753_V1.4911.00
675_F708_M1.4901.00
286_L351_L1.4901.00
426_A430_E1.4811.00
309_L353_D1.4781.00
326_R330_L1.4761.00
274_A351_L1.4681.00
485_L505_Y1.4641.00
134_I507_L1.4601.00
167_A172_S1.4581.00
647_V717_P1.4481.00
388_M624_F1.4471.00
642_L680_Q1.4371.00
320_V623_N1.4341.00
136_A140_S1.4341.00
213_I243_I1.4281.00
324_E327_R1.4221.00
296_E349_A1.4131.00
59_H76_E1.4111.00
211_L351_L1.4101.00
493_L500_T1.4061.00
285_A340_I1.3901.00
112_P127_W1.3811.00
321_G324_E1.3771.00
571_E575_E1.3771.00
290_M351_L1.3741.00
293_L296_E1.3591.00
369_I382_L1.3541.00
148_E456_A1.3531.00
149_F167_A1.3471.00
113_L124_P1.3461.00
60_S73_I1.3461.00
292_R330_L1.3441.00
678_A709_D1.3421.00
629_G634_P1.3371.00
452_C475_A1.3351.00
166_F562_A1.3321.00
461_C486_A1.3281.00
138_L487_V1.3281.00
276_Y347_Q1.3251.00
282_G341_S1.3221.00
491_T511_G1.3211.00
701_G718_M1.3181.00
143_D146_Q1.3141.00
99_G664_Y1.3141.00
549_K553_A1.3131.00
493_L506_I1.3121.00
550_S553_A1.3081.00
358_A361_T1.3051.00
245_P275_Y1.3031.00
637_A697_L1.3021.00
293_L309_L1.2981.00
582_N585_E1.2971.00
684_C755_L1.2951.00
313_E316_Q1.2941.00
58_K73_I1.2881.00
322_F326_R1.2801.00
336_D339_R1.2761.00
577_Y581_R1.2731.00
674_V703_R1.2721.00
61_A74_A1.2691.00
133_E485_L1.2661.00
332_S340_I1.2531.00
135_G561_A1.2511.00
131_F549_K1.2501.00
290_M355_Y1.2491.00
578_D581_R1.2491.00
189_G379_V1.2481.00
291_M329_V1.2461.00
332_S337_I1.2421.00
673_V706_R1.2411.00
210_D358_A1.2351.00
295_I310_L1.2341.00
332_S336_D1.2271.00
429_G435_T1.2251.00
475_A478_V1.2231.00
278_V343_L1.2171.00
472_D475_A1.2161.00
148_E447_S1.2151.00
342_G712_K1.2131.00
489_V509_V1.2131.00
147_V458_A1.2051.00
489_V554_V1.2041.00
391_N397_A1.2011.00
642_L754_E1.2001.00
677_S713_V1.1991.00
241_I351_L1.1971.00
74_A81_Q1.1951.00
278_V282_G1.1921.00
578_D582_N1.1911.00
708_M711_L1.1911.00
315_I624_F1.1791.00
116_D121_C1.1761.00
290_M352_A1.1721.00
205_D208_K1.1711.00
443_A446_A1.1701.00
129_Q505_Y1.1701.00
488_H500_T1.1691.00
312_D326_R1.1621.00
210_D359_E1.1611.00
449_Q475_A1.1611.00
595_N598_I1.1551.00
309_L357_A1.1541.00
242_A269_T1.1481.00
510_L548_L1.1451.00
422_A425_L1.1371.00
639_N754_E1.1361.00
137_R484_D1.1361.00
293_L348_I1.1261.00
58_K75_W1.1261.00
458_A485_L1.1241.00
462_M555_V1.1161.00
115_Y122_Y1.1161.00
212_V238_A1.1161.00
346_T349_A1.1161.00
287_L382_L1.1161.00
553_A560_Q1.1151.00
212_V230_L1.1121.00
294_L389_K1.1111.00
639_N697_L1.1091.00
322_F388_M1.1061.00
232_A235_K1.1011.00
290_M294_L1.0971.00
234_V271_L1.0961.00
452_C478_V1.0941.00
215_I243_I1.0931.00
213_I290_M1.0921.00
212_V233_L1.0911.00
81_Q103_L1.0881.00
716_Y755_L1.0851.00
211_L358_A1.0851.00
675_F706_R1.0821.00
138_L562_A1.0801.00
331_N336_D1.0781.00
214_C217_H1.0771.00
290_M385_L1.0741.00
338_E341_S1.0671.00
458_A487_V1.0661.00
560_Q565_Q1.0661.00
576_D581_R1.0631.00
107_G661_D1.0581.00
478_V482_Q1.0551.00
289_G348_I1.0541.00
239_K273_S1.0541.00
640_S754_E1.0531.00
206_F362_I1.0511.00
355_Y363_I1.0481.00
325_L388_M1.0461.00
560_Q571_E1.0411.00
110_T544_A1.0381.00
507_L554_V1.0331.00
188_V742_L1.0191.00
694_L718_M1.0191.00
363_I386_L1.0191.00
338_E346_T1.0181.00
145_N439_A1.0181.00
337_I341_S1.0171.00
141_Y485_L1.0171.00
241_I354_A1.0141.00
516_D536_A1.0141.00
243_I351_L1.0111.00
323_D326_R1.0091.00
569_A572_Y1.0071.00
674_V755_L1.0071.00
718_M731_N1.0061.00
617_T623_N1.0051.00
676_M686_V1.0021.00
141_Y484_D1.0021.00
644_M753_V0.9991.00
447_S456_A0.9961.00
641_K754_E0.9951.00
387_L622_A0.9901.00
134_I485_L0.9891.00
243_I276_Y0.9881.00
446_A449_Q0.9851.00
211_L361_T0.9841.00
676_M681_A0.9761.00
110_T124_P0.9761.00
147_V170_Y0.9731.00
137_R141_Y0.9721.00
662_D665_R0.9701.00
128_Q561_A0.9701.00
467_A473_R0.9691.00
640_S696_A0.9681.00
460_I558_I0.9641.00
336_D340_I0.9631.00
103_L541_L0.9631.00
247_Q270_Q0.9621.00
349_A353_D0.9611.00
77_V82_V0.9611.00
74_A513_S0.9601.00
293_L352_A0.9601.00
289_G293_L0.9591.00
320_V621_K0.9581.00
467_A477_A0.9581.00
135_G562_A0.9581.00
122_Y506_I0.9571.00
142_S146_Q0.9561.00
210_D236_R0.9551.00
138_L170_Y0.9541.00
678_A682_K0.9531.00
421_S424_F0.9521.00
449_Q453_T0.9511.00
509_V554_V0.9501.00
131_F558_I0.9481.00
292_R329_V0.9471.00
134_I558_I0.9471.00
127_W507_L0.9471.00
361_T391_N0.9461.00
131_F553_A0.9451.00
461_C496_S0.9451.00
574_V578_D0.9451.00
287_L381_Q0.9431.00
694_L753_V0.9431.00
645_A715_I0.9431.00
446_A450_A0.9431.00
239_K274_A0.9431.00
75_W83_N0.9421.00
319_T387_L0.9411.00
284_M378_N0.9391.00
570_W576_D0.9381.00
145_N173_N0.9351.00
343_L348_I0.9331.00
534_I594_Y0.9331.00
450_A455_Q0.9311.00
292_R333_E0.9311.00
333_E337_I0.9271.00
117_A120_D0.9271.00
245_P277_N0.9261.00
350_E353_D0.9251.00
288_K328_D0.9251.00
135_G139_Q0.9251.00
123_K129_Q0.9211.00
513_S540_V0.9211.00
637_A752_P0.9211.00
430_E433_G0.9191.00
459_L483_L0.9191.00
193_S380_Q0.9181.00
288_K332_S0.9181.00
114_K129_Q0.9151.00
325_L329_V0.9151.00
642_L755_L0.9141.00
127_W554_V0.9090.99
334_W349_A0.9080.99
109_L506_I0.9070.99
590_E594_Y0.9070.99
545_G548_L0.9060.99
310_L388_M0.9060.99
360_R394_K0.9050.99
297_R308_S0.9030.99
575_E578_D0.9030.99
677_S707_R0.9010.99
84_A111_Q0.8980.99
614_R620_G0.8960.99
581_R585_E0.8960.99
134_I137_R0.8960.99
597_R601_P0.8930.99
677_S711_L0.8930.99
732_H735_T0.8880.99
243_I278_V0.8870.99
279_R712_K0.8870.99
207_E229_S0.8870.99
675_F710_R0.8860.99
384_N624_F0.8850.99
80_K104_E0.8830.99
278_V286_L0.8800.99
138_L460_I0.8800.99
712_K715_I0.8780.99
429_G434_F0.8780.99
442_H450_A0.8730.99
634_P698_T0.8730.99
636_S752_P0.8720.99
328_D331_N0.8720.99
465_N655_T0.8700.99
439_A442_H0.8700.99
214_C240_M0.8680.99
596_Q600_H0.8670.99
510_L543_P0.8670.99
570_W573_L0.8660.99
219_P230_L0.8640.99
576_D580_I0.8630.99
444_A448_M0.8590.99
500_T506_I0.8570.99
701_G734_L0.8560.99
360_R397_A0.8560.99
637_A641_K0.8560.99
369_I378_N0.8550.99
325_L624_F0.8540.99
211_L239_K0.8540.99
474_E478_V0.8490.99
467_A480_L0.8460.99
353_D356_A0.8450.99
452_C482_Q0.8450.99
280_I715_I0.8440.99
593_D598_I0.8350.99
343_L347_Q0.8340.99
207_E232_A0.8340.99
112_P126_S0.8340.99
311_D394_K0.8320.99
681_A686_V0.8320.99
270_Q710_R0.8320.99
451_I454_G0.8300.99
150_Y153_G0.8290.99
213_I363_I0.8280.99
241_I274_A0.8280.99
127_W549_K0.8260.99
247_Q277_N0.8240.99
234_V240_M0.8210.99
604_F608_N0.8210.99
334_W337_I0.8200.99
111_Q126_S0.8190.99
323_D327_R0.8180.99
293_L345_Q0.8180.99
233_L236_R0.8170.99
59_H540_V0.8160.99
698_T751_I0.8150.99
286_L290_M0.8130.99
63_F70_A0.8120.99
679_K709_D0.8120.99
91_T121_C0.8110.99
145_N172_S0.8110.99
345_Q348_I0.8100.99
291_M385_L0.8100.99
136_A139_Q0.8100.99
334_W338_E0.8080.99
192_A380_Q0.8070.99
287_L385_L0.8070.99
232_A236_R0.8060.99
277_N712_K0.8030.99
577_Y580_I0.8030.99
137_R485_L0.8020.99
346_T350_E0.8020.99
244_N248_E0.7990.99
363_I382_L0.7990.99
637_A640_S0.7990.99
429_G436_P0.7980.99
74_A540_V0.7970.99
297_R356_A0.7960.99
354_A358_A0.7960.99
437_P441_G0.7950.99
541_L544_A0.7950.99
285_A289_G0.7930.99
133_E136_A0.7930.99
166_F555_V0.7920.99
367_M371_Q0.7920.99
289_G339_R0.7910.99
231_R234_V0.7890.99
247_Q710_R0.7860.99
294_L385_L0.7860.99
679_K683_I0.7850.99
211_L355_Y0.7820.98
451_I483_L0.7820.98
141_Y457_R0.7800.98
279_R342_G0.7780.98
490_A506_I0.7780.98
623_N626_T0.7750.98
594_Y598_I0.7750.98
288_K329_V0.7750.98
591_F595_N0.7750.98
247_Q709_D0.7740.98
72_A90_N0.7700.98
427_R431_R0.7690.98
201_V205_D0.7690.98
119_S123_K0.7680.98
278_V341_S0.7670.98
747_G750_S0.7660.98
296_E334_W0.7660.98
68_N225_R0.7660.98
457_R483_L0.7640.98
604_F607_I0.7630.98
607_I610_A0.7620.98
166_F558_I0.7620.98
591_F594_Y0.7620.98
579_R583_D0.7600.98
536_A599_R0.7580.98
703_R731_N0.7580.98
334_W345_Q0.7570.98
289_G336_D0.7540.98
139_Q562_A0.7540.98
549_K554_V0.7530.98
125_L130_A0.7520.98
481_T502_R0.7510.98
294_L308_S0.7510.98
538_R599_R0.7500.98
220_G268_E0.7490.98
77_V80_K0.7490.98
192_A742_L0.7490.98
592_A595_N0.7490.98
347_Q354_A0.7480.98
131_F135_G0.7460.98
104_E541_L0.7460.98
461_C488_H0.7460.98
516_D538_R0.7440.98
338_E343_L0.7420.98
289_G334_W0.7420.98
276_Y286_L0.7420.98
189_G383_V0.7390.98
676_M692_V0.7390.98
151_T154_R0.7390.98
335_K338_E0.7370.98
155_T462_M0.7360.98
494_N500_T0.7360.98
328_D332_S0.7350.98
360_R395_P0.7350.98
110_T113_L0.7350.98
474_E477_A0.7350.98
205_D396_G0.7350.98
166_F559_A0.7340.98
103_L511_G0.7340.98
698_T735_T0.7330.98
739_H744_G0.7330.98
700_D703_R0.7310.98
556_A560_Q0.7310.98
511_G544_A0.7300.98
352_A356_A0.7290.98
474_E733_M0.7270.98
656_T660_M0.7270.98
597_R600_H0.7270.98
373_E747_G0.7260.98
193_S625_I0.7250.98
608_N611_A0.7240.98
676_M707_R0.7240.98
697_L752_P0.7240.98
248_E268_E0.7230.97
516_D574_V0.7210.97
581_R584_I0.7200.97
458_A505_Y0.7190.97
686_V707_R0.7180.97
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297_R334_W0.5550.90
117_A504_S0.5550.90
484_D502_R0.5540.90
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213_I385_L0.5530.90
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76_E540_V0.5520.90
673_V704_S0.5520.90
150_Y154_R0.5520.90
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707_R710_R0.5510.90
445_I450_A0.5500.89
437_P440_P0.5500.89
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61_A72_A0.5370.88
291_M295_I0.5360.88
643_V750_S0.5360.88
347_Q351_L0.5340.88
477_A502_R0.5340.88
593_D597_R0.5340.88
736_L747_G0.5340.88
691_R705_S0.5340.88
488_H496_S0.5330.88
162_L570_W0.5330.88
245_P278_V0.5330.88
673_V719_A0.5330.88
438_H441_G0.5330.88
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543_P548_L0.5320.88
596_Q599_R0.5320.88
290_M353_D0.5320.88
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292_R336_D0.5310.88
183_H186_T0.5300.88
294_L309_L0.5300.88
579_R582_N0.5300.88
619_S626_T0.5300.88
573_L577_Y0.5300.88
450_A456_A0.5290.88
449_Q737_D0.5290.88
428_L432_Y0.5290.88
123_K133_E0.5290.88
577_Y582_N0.5280.87
217_H366_G0.5280.87
96_L99_G0.5280.87
176_P180_N0.5270.87
678_A707_R0.5260.87
355_Y391_N0.5260.87
690_E705_S0.5250.87
135_G557_G0.5250.87
701_G731_N0.5250.87
99_G663_R0.5240.87
603_G606_L0.5230.87
231_R235_K0.5230.87
606_L610_A0.5230.87
135_G558_I0.5220.87
215_I369_I0.5220.87
167_A170_Y0.5210.87
213_I355_Y0.5200.87
244_N275_Y0.5180.86
576_D585_E0.5170.86
587_V592_A0.5170.86
159_A515_I0.5170.86
204_E208_K0.5150.86
130_A134_I0.5150.86
559_A565_Q0.5150.86
431_R587_V0.5150.86
509_V551_E0.5150.86
294_L357_A0.5150.86
129_Q132_D0.5150.86
634_P751_I0.5150.86
648_R720_D0.5150.86
125_L485_L0.5140.86
597_R608_N0.5130.86
486_A496_S0.5130.86
391_N394_K0.5130.86
427_R433_G0.5130.86
120_D123_K0.5130.86
63_F91_T0.5120.86
343_L351_L0.5120.86
431_R586_A0.5110.86
487_V505_Y0.5100.86
290_M361_T0.5100.86
94_S98_W0.5100.86
662_D666_G0.5090.86
431_R434_F0.5090.86
288_K325_L0.5090.86
459_L467_A0.5090.86
331_N628_K0.5090.86
680_Q684_C0.5080.85
641_K684_C0.5080.85
711_L714_V0.5080.85
206_F226_M0.5080.85
696_A752_P0.5080.85
290_M293_L0.5080.85
92_V96_L0.5080.85
87_F95_L0.5070.85
290_M356_A0.5060.85
528_E534_I0.5060.85
641_K697_L0.5050.85
138_L166_F0.5050.85
467_A496_S0.5050.85
202_L205_D0.5040.85
461_C480_L0.5030.85
231_R271_L0.5030.85
556_A576_D0.5020.85
393_G398_G0.5020.85
219_P402_L0.5010.85
374_H378_N0.5010.85
282_G337_I0.5000.85
267_S270_Q0.5000.85
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1h0hA 1 0.8814 100 0.235 Contact Map
2iv2X 1 0.834 100 0.235 Contact Map
1kqfA 3 0.8788 100 0.238 Contact Map
2napA 1 0.863 100 0.243 Contact Map
2e7zA 1 0.8485 100 0.244 Contact Map
2vpzA 1 0.8577 100 0.247 Contact Map
3ml1A 1 0.8709 100 0.25 Contact Map
2ivfA 1 0.8709 100 0.272 Contact Map
1q16A 2 0.9223 100 0.277 Contact Map
1g8kA 3 0.8379 100 0.292 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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