YAHJ - ECOLI - GREMLIN Contacts

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YAHJ - Uncharacterized protein YahJ

UniProt:	P77554	Sequences: MKESNSRREFLSQSGKMVTAAALFGTSVPLAHAAVAGTLNCEANNTMKITDPHYYLDNVLLETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKLHPDATLPHYDAGGKLMLPTTRDMHIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFPQHGLLLSKSEPLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQLKGKLTISHAFALATLNEQQVDELANRMVVQQISIASTVPIGTLHMPLKQLHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13594
Length:	460 (381)
Sequences:	19955 (15359)
Seq/√Len:	786.8

ECOLI - YAHJ CODA GUAD SSNA IADA PHNM
BACSU - YTCJ HUTI ALLB
HALSA - Q9HNZ2 MTAD HUTI Q9HQE0 Q9HHS1
SULSO - Q97V65 Q97VT3 Q97WS6 Q7LXN1 Q97W09 Q97XD4 Q980B7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
448_F	453_L	4.896	1.00
111_K	445_T	3.843	1.00
85_Q	90_V	3.776	1.00
446_A	453_L	3.757	1.00
56_L	108_A	3.495	1.00
423_D	450_K	3.236	1.00
57_D	105_H	3.173	1.00
419_K	422_D	3.171	1.00
108_A	428_L	3.121	1.00
348_K	352_D	3.117	1.00
394_N	397_R	2.970	1.00
116_T	179_T	2.897	1.00
59_V	108_A	2.829	1.00
114_L	429_V	2.651	1.00
91_A	420_A	2.616	1.00
318_Q	353_K	2.558	1.00
400_F	404_G	2.548	1.00
356_K	408_P	2.436	1.00
114_L	427_V	2.354	1.00
87_G	423_D	2.275	1.00
88_K	423_D	2.262	1.00
412_K	416_V	2.233	1.00
113_M	428_L	2.188	1.00
55_Y	83_E	2.155	1.00
453_L	456_G	2.111	1.00
104_P	456_G	2.102	1.00
426_F	448_F	2.096	1.00
174_Q	454_V	2.074	1.00
158_L	161_Y	2.029	1.00
346_P	349_Q	2.017	1.00
264_I	267_D	2.012	1.00
82_V	113_M	1.983	1.00
87_G	450_K	1.973	1.00
84_I	426_F	1.972	1.00
82_V	418_P	1.972	1.00
54_Y	448_F	1.949	1.00
230_L	233_E	1.902	1.00
58_N	107_D	1.902	1.00
81_T	96_K	1.900	1.00
400_F	405_D	1.881	1.00
233_E	237_A	1.861	1.00
318_Q	322_E	1.861	1.00
418_P	426_F	1.847	1.00
415_R	423_D	1.840	1.00
351_H	397_R	1.822	1.00
230_L	234_A	1.814	1.00
430_D	445_T	1.814	1.00
93_R	96_K	1.806	1.00
317_E	353_K	1.797	1.00
92_L	420_A	1.795	1.00
77_T	80_Q	1.790	1.00
88_K	415_R	1.789	1.00
397_R	400_F	1.774	1.00
111_K	430_D	1.760	1.00
263_Q	267_D	1.757	1.00
447_T	455_W	1.745	1.00
83_E	91_A	1.730	1.00
408_P	413_G	1.709	1.00
163_Q	201_A	1.707	1.00
113_M	426_F	1.702	1.00
295_E	323_L	1.699	1.00
230_L	235_M	1.686	1.00
314_T	349_Q	1.682	1.00
83_E	103_L	1.681	1.00
427_V	444_R	1.659	1.00
61_L	80_Q	1.646	1.00
111_K	428_L	1.621	1.00
175_S	455_W	1.616	1.00
449_H	454_V	1.607	1.00
446_A	456_G	1.607	1.00
358_M	409_L	1.599	1.00
82_V	426_F	1.594	1.00
416_V	423_D	1.552	1.00
405_D	408_P	1.538	1.00
350_L	355_V	1.528	1.00
255_E	259_D	1.525	1.00
292_E	296_K	1.520	1.00
284_V	288_N	1.518	1.00
57_D	81_T	1.502	1.00
89_I	418_P	1.489	1.00
163_Q	205_R	1.467	1.00
417_W	422_D	1.462	1.00
326_R	356_K	1.459	1.00
56_L	84_I	1.447	1.00
83_E	90_V	1.443	1.00
118_R	406_V	1.442	1.00
380_A	402_A	1.441	1.00
114_L	117_T	1.441	1.00
59_V	113_M	1.438	1.00
232_R	236_Q	1.436	1.00
326_R	409_L	1.429	1.00
233_E	236_Q	1.426	1.00
259_D	263_Q	1.420	1.00
61_L	82_V	1.414	1.00
428_L	446_A	1.403	1.00
265_A	272_V	1.399	1.00
114_L	399_L	1.372	1.00
81_T	98_H	1.372	1.00
349_Q	353_K	1.369	1.00
384_A	398_S	1.364	1.00
120_M	358_M	1.352	1.00
432_S	435_A	1.348	1.00
264_I	268_Y	1.345	1.00
388_I	393_Q	1.335	1.00
84_I	448_F	1.328	1.00
91_A	98_H	1.317	1.00
404_G	422_D	1.317	1.00
198_N	201_A	1.316	1.00
428_L	448_F	1.312	1.00
108_A	113_M	1.305	1.00
231_M	235_M	1.302	1.00
80_Q	94_E	1.299	1.00
241_Y	244_G	1.291	1.00
167_E	205_R	1.284	1.00
414_E	422_D	1.283	1.00
173_L	181_A	1.282	1.00
56_L	448_F	1.281	1.00
319_Q	323_L	1.277	1.00
56_L	426_F	1.272	1.00
231_M	234_A	1.272	1.00
412_K	415_R	1.268	1.00
229_P	233_E	1.261	1.00
404_G	408_P	1.256	1.00
260_T	263_Q	1.252	1.00
246_D	249_S	1.249	1.00
239_A	243_G	1.247	1.00
201_A	205_R	1.244	1.00
229_P	232_R	1.237	1.00
439_A	442_S	1.229	1.00
314_T	346_P	1.227	1.00
240_H	243_G	1.225	1.00
81_T	95_N	1.219	1.00
349_Q	352_D	1.214	1.00
120_M	406_V	1.211	1.00
238_G	241_Y	1.203	1.00
254_M	257_S	1.203	1.00
434_S	437_A	1.200	1.00
281_P	285_A	1.199	1.00
58_N	79_R	1.196	1.00
55_Y	81_T	1.184	1.00
358_M	405_D	1.183	1.00
91_A	97_L	1.180	1.00
182_R	410_N	1.180	1.00
271_G	411_E	1.178	1.00
234_A	237_A	1.173	1.00
197_Q	201_A	1.172	1.00
285_A	288_N	1.170	1.00
321_D	355_V	1.168	1.00
356_K	405_D	1.162	1.00
54_Y	84_I	1.161	1.00
330_Q	333_S	1.144	1.00
256_K	259_D	1.129	1.00
170_I	174_Q	1.124	1.00
359_T	383_Y	1.123	1.00
120_M	328_V	1.118	1.00
429_V	444_R	1.117	1.00
432_S	436_E	1.116	1.00
306_I	309_A	1.112	1.00
159_Q	201_A	1.109	1.00
273_D	307_S	1.107	1.00
180_I	416_V	1.103	1.00
381_N	385_Q	1.103	1.00
319_Q	322_E	1.101	1.00
242_V	245_L	1.096	1.00
94_E	97_L	1.086	1.00
313_A	316_N	1.083	1.00
309_A	327_M	1.080	1.00
60_L	78_A	1.080	1.00
147_M	150_L	1.079	1.00
293_T	296_K	1.076	1.00
280_T	284_V	1.076	1.00
58_N	110_G	1.075	1.00
146_D	150_L	1.073	1.00
167_E	171_D	1.066	1.00
431_A	436_E	1.060	1.00
174_Q	449_H	1.059	1.00
380_A	398_S	1.047	1.00
315_L	318_Q	1.045	1.00
172_L	175_S	1.039	1.00
80_Q	92_L	1.034	1.00
433_C	436_E	1.027	1.00
106_Y	446_A	1.022	1.00
76_R	396_S	1.022	1.00
328_V	358_M	1.021	1.00
213_E	217_F	1.016	1.00
312_L	350_L	1.014	1.00
375_D	378_E	1.012	1.00
214_I	217_F	1.011	1.00
60_L	77_T	1.009	1.00
208_A	211_E	1.008	1.00
230_L	237_A	1.005	1.00
171_D	206_R	1.003	1.00
104_P	453_L	1.003	1.00
124_L	169_L	1.000	1.00
232_R	268_Y	0.999	1.00
80_Q	93_R	0.999	1.00
247_P	250_V	0.999	1.00
106_Y	448_F	0.998	1.00
208_A	213_E	0.997	1.00
241_Y	245_L	0.995	1.00
239_A	242_V	0.994	1.00
96_K	99_P	0.993	1.00
320_V	327_M	0.991	1.00
285_A	289_Y	0.989	1.00
54_Y	104_P	0.988	1.00
427_V	447_T	0.987	1.00
118_R	180_I	0.987	1.00
378_E	381_N	0.982	1.00
93_R	97_L	0.977	1.00
80_Q	95_N	0.977	1.00
81_T	97_L	0.973	1.00
309_A	312_L	0.971	1.00
159_Q	163_Q	0.970	1.00
413_G	422_D	0.969	1.00
202_V	205_R	0.963	1.00
89_I	426_F	0.959	1.00
276_L	306_I	0.959	1.00
73_V	76_R	0.957	1.00
58_N	109_G	0.957	1.00
232_R	237_A	0.956	1.00
358_M	406_V	0.948	1.00
321_D	353_K	0.943	1.00
83_E	102_T	0.937	1.00
60_L	112_L	0.936	1.00
90_V	420_A	0.931	1.00
56_L	106_Y	0.923	1.00
291_V	295_E	0.919	1.00
93_R	98_H	0.919	1.00
359_T	401_L	0.917	1.00
118_R	416_V	0.916	1.00
334_I	337_T	0.915	1.00
340_I	345_M	0.915	1.00
163_Q	167_E	0.914	1.00
401_L	405_D	0.906	1.00
307_S	310_F	0.906	1.00
246_D	251_D	0.904	1.00
62_E	112_L	0.903	1.00
238_G	243_G	0.899	1.00
275_H	362_D	0.898	1.00
259_D	292_E	0.896	1.00
56_L	113_M	0.893	1.00
221_G	224_L	0.890	1.00
320_V	324_A	0.886	1.00
318_Q	321_D	0.884	1.00
178_T	376_M	0.880	1.00
232_R	235_M	0.873	1.00
54_Y	106_Y	0.868	1.00
332_I	382_L	0.865	1.00
230_L	236_Q	0.865	1.00
118_R	410_N	0.863	1.00
327_M	355_V	0.863	1.00
291_V	319_Q	0.863	1.00
151_E	155_L	0.859	1.00
209_G	213_E	0.858	1.00
341_G	345_M	0.855	1.00
195_N	198_N	0.855	1.00
292_E	295_E	0.854	1.00
258_L	274_I	0.854	1.00
82_V	92_L	0.853	1.00
377_L	380_A	0.853	1.00
377_L	429_V	0.850	1.00
348_K	351_H	0.846	1.00
102_T	105_H	0.840	1.00
329_V	333_S	0.840	1.00
213_E	216_A	0.839	1.00
208_A	212_C	0.839	1.00
247_P	251_D	0.838	1.00
174_Q	447_T	0.835	1.00
414_E	417_W	0.829	1.00
257_S	260_T	0.829	1.00
63_T	73_V	0.829	1.00
57_D	107_D	0.828	1.00
341_G	344_H	0.827	1.00
74_Q	400_F	0.824	1.00
111_K	446_A	0.823	1.00
194_K	198_N	0.821	1.00
195_N	202_V	0.819	1.00
314_T	353_K	0.817	1.00
269_D	303_K	0.813	1.00
143_T	146_D	0.813	1.00
81_T	91_A	0.813	1.00
198_N	202_V	0.813	1.00
340_I	343_L	0.813	1.00
444_R	447_T	0.811	1.00
295_E	319_Q	0.810	1.00
433_C	438_V	0.805	1.00
232_R	264_I	0.800	1.00
118_R	407_L	0.799	1.00
239_A	245_L	0.797	1.00
339_P	345_M	0.796	1.00
265_A	270_K	0.796	1.00
57_D	95_N	0.794	1.00
180_I	412_K	0.793	1.00
238_G	242_V	0.793	1.00
320_V	323_L	0.791	1.00
348_K	397_R	0.791	1.00
320_V	325_N	0.791	1.00
430_D	443_P	0.790	1.00
328_V	333_S	0.788	1.00
388_I	392_E	0.788	1.00
238_G	245_L	0.787	1.00
174_Q	455_W	0.787	1.00
431_A	438_V	0.787	1.00
171_D	175_S	0.785	1.00
314_T	318_Q	0.781	1.00
381_N	440_R	0.778	1.00
294_V	298_P	0.778	1.00
193_L	197_Q	0.774	1.00
123_H	275_H	0.774	1.00
340_I	344_H	0.771	1.00
290_M	294_V	0.766	1.00
317_E	350_L	0.766	1.00
95_N	99_P	0.766	1.00
83_E	93_R	0.764	1.00
204_A	207_Q	0.760	1.00
201_A	204_A	0.757	1.00
203_L	210_F	0.752	1.00
416_V	422_D	0.750	1.00
180_I	410_N	0.749	1.00
306_I	320_V	0.749	1.00
288_N	319_Q	0.746	1.00
399_L	403_T	0.746	1.00
194_K	197_Q	0.746	1.00
79_R	92_L	0.746	1.00
309_A	320_V	0.745	1.00
408_P	417_W	0.742	1.00
262_F	272_V	0.741	1.00
173_L	374_G	0.740	1.00
196_L	199_L	0.739	1.00
149_K	152_Q	0.737	1.00
425_S	450_K	0.737	1.00
119_D	122_I	0.736	1.00
153_K	156_P	0.734	1.00
387_Y	391_N	0.733	1.00
179_T	447_T	0.732	1.00
240_H	244_G	0.730	1.00
203_L	207_Q	0.729	1.00
308_H	362_D	0.728	1.00
184_H	273_D	0.727	1.00
413_G	416_V	0.726	1.00
435_A	438_V	0.725	1.00
95_N	98_H	0.724	1.00
262_F	266_L	0.724	1.00
123_H	308_H	0.724	1.00
326_R	358_M	0.722	1.00
121_H	362_D	0.721	1.00
203_L	206_R	0.716	1.00
257_S	261_M	0.716	1.00
108_A	111_K	0.716	1.00
79_R	109_G	0.715	1.00
305_T	409_L	0.705	1.00
172_L	176_K	0.705	1.00
293_T	297_T	0.705	1.00
211_E	214_I	0.704	1.00
339_P	344_H	0.703	1.00
79_R	95_N	0.703	1.00
60_L	79_R	0.703	1.00
388_I	391_N	0.702	1.00
330_Q	360_G	0.701	1.00
284_V	316_N	0.700	1.00
431_A	442_S	0.699	1.00
402_A	406_V	0.698	1.00
220_H	223_L	0.698	1.00
266_L	304_L	0.697	1.00
91_A	101_A	0.696	1.00
303_K	408_P	0.696	1.00
286_A	289_Y	0.695	1.00
256_K	260_T	0.692	1.00
123_H	362_D	0.691	1.00
378_E	382_L	0.690	1.00
342_T	345_M	0.689	1.00
274_I	290_M	0.689	1.00
173_L	178_T	0.687	1.00
373_L	378_E	0.686	1.00
195_N	199_L	0.684	1.00
124_L	181_A	0.682	1.00
317_E	349_Q	0.682	1.00
376_M	402_A	0.681	1.00
308_H	312_L	0.678	1.00
206_R	209_G	0.678	1.00
325_N	328_V	0.677	1.00
223_L	226_K	0.675	1.00
440_R	443_P	0.675	1.00
163_Q	198_N	0.673	1.00
99_P	105_H	0.671	1.00
119_D	361_T	0.671	1.00
117_T	377_L	0.671	1.00
332_I	379_K	0.670	1.00
197_Q	200_Q	0.670	1.00
321_D	324_A	0.670	1.00
84_I	90_V	0.668	1.00
117_T	178_T	0.668	1.00
431_A	434_S	0.667	1.00
216_A	219_Q	0.667	1.00
73_V	77_T	0.665	1.00
168_K	172_L	0.664	1.00
59_V	426_F	0.663	1.00
328_V	332_I	0.663	1.00
389_R	393_Q	0.662	1.00
202_V	206_R	0.662	1.00
82_V	89_I	0.661	1.00
81_T	93_R	0.661	1.00
425_S	449_H	0.660	1.00
182_R	305_T	0.660	1.00
170_I	208_A	0.659	1.00
176_K	375_D	0.659	1.00
196_L	200_Q	0.657	1.00
116_T	449_H	0.655	1.00
324_A	356_K	0.652	1.00
200_Q	203_L	0.651	1.00
122_I	173_L	0.651	1.00
80_Q	418_P	0.650	1.00
357_V	401_L	0.648	1.00
320_V	355_V	0.648	1.00
248_T	251_D	0.648	1.00
147_M	151_E	0.647	1.00
263_Q	266_L	0.647	1.00
259_D	293_T	0.647	1.00
315_L	319_Q	0.646	1.00
286_A	290_M	0.646	1.00
217_F	220_H	0.643	1.00
239_A	244_G	0.642	1.00
92_L	418_P	0.642	1.00
209_G	212_C	0.642	1.00
161_Y	164_E	0.641	1.00
205_R	208_A	0.639	1.00
72_A	404_G	0.639	1.00
55_Y	102_T	0.638	1.00
130_G	133_W	0.638	1.00
168_K	171_D	0.637	1.00
224_L	227_S	0.633	1.00
195_N	200_Q	0.631	1.00
382_L	385_Q	0.630	1.00
255_E	285_A	0.629	1.00
327_M	350_L	0.625	1.00
331_Q	334_I	0.624	1.00
58_N	108_A	0.623	1.00
329_V	334_I	0.622	1.00
79_R	94_E	0.620	1.00
266_L	301_K	0.619	1.00
76_R	79_R	0.618	1.00
199_L	202_V	0.617	1.00
63_T	72_A	0.616	1.00
159_Q	197_Q	0.616	1.00
228_E	260_T	0.615	1.00
433_C	437_A	0.615	1.00
131_G	135_S	0.615	1.00
339_P	343_L	0.614	1.00
260_T	264_I	0.613	1.00
184_H	307_S	0.613	1.00
120_M	410_N	0.612	1.00
91_A	99_P	0.612	1.00
160_P	164_E	0.609	1.00
214_I	218_P	0.609	1.00
124_L	170_I	0.609	1.00
121_H	275_H	0.609	1.00
128_F	131_G	0.607	1.00
321_D	354_G	0.607	1.00
72_A	419_K	0.606	1.00
348_K	387_Y	0.605	1.00
292_E	315_L	0.605	1.00
144_I	148_I	0.604	1.00
167_E	202_V	0.603	1.00
89_I	92_L	0.603	1.00
59_V	428_L	0.599	1.00
308_H	313_A	0.599	1.00
273_D	305_T	0.598	1.00
434_S	438_V	0.597	1.00
215_V	218_P	0.595	1.00
312_L	346_P	0.595	1.00
231_M	236_Q	0.595	1.00
294_V	302_G	0.593	1.00
77_T	396_S	0.590	1.00
203_L	208_A	0.590	1.00
145_Q	149_K	0.589	1.00
384_A	389_R	0.589	1.00
413_G	417_W	0.588	1.00
180_I	425_S	0.588	1.00
259_D	296_K	0.587	1.00
351_H	357_V	0.586	1.00
207_Q	211_E	0.585	1.00
91_A	96_K	0.583	1.00
384_A	388_I	0.581	1.00
167_E	206_R	0.579	1.00
220_H	224_L	0.576	1.00
199_L	203_L	0.576	1.00
431_A	437_A	0.573	1.00
73_V	419_K	0.573	1.00
330_Q	334_I	0.570	1.00
159_Q	198_N	0.570	1.00
213_E	218_P	0.569	1.00
396_S	400_F	0.569	1.00
214_I	220_H	0.568	1.00
266_L	302_G	0.568	1.00
106_Y	453_L	0.568	1.00
294_V	297_T	0.566	1.00
122_I	181_A	0.566	1.00
203_L	212_C	0.564	1.00
216_A	220_H	0.563	1.00
395_L	434_S	0.563	1.00
389_R	392_E	0.559	1.00
62_E	76_R	0.558	1.00
450_K	453_L	0.558	1.00
229_P	234_A	0.555	1.00
292_E	319_Q	0.551	1.00
211_E	215_V	0.550	1.00
432_S	437_A	0.550	1.00
407_L	422_D	0.549	1.00
375_D	381_N	0.547	1.00
170_I	181_A	0.546	1.00
194_K	199_L	0.545	1.00
255_E	288_N	0.543	1.00
210_F	213_E	0.542	1.00
61_L	78_A	0.538	1.00
117_T	402_A	0.538	1.00
181_A	210_F	0.538	1.00
305_T	328_V	0.537	1.00
331_Q	335_A	0.537	1.00
167_E	170_I	0.537	1.00
153_K	157_E	0.537	1.00
167_E	207_Q	0.536	1.00
222_L	226_K	0.535	1.00
332_I	336_S	0.534	1.00
57_D	99_P	0.533	1.00
98_H	101_A	0.533	1.00
308_H	311_A	0.533	1.00
232_R	267_D	0.533	1.00
351_H	405_D	0.532	1.00
72_A	77_T	0.531	1.00
120_M	409_L	0.531	1.00
126_K	363_S	0.530	1.00
218_P	221_G	0.530	1.00
284_V	287_I	0.529	1.00
240_H	245_L	0.528	1.00
291_V	322_E	0.527	1.00
152_Q	155_L	0.527	1.00
406_V	409_L	0.526	1.00
359_T	402_A	0.526	1.00
163_Q	202_V	0.525	1.00
60_L	432_S	0.525	1.00
210_F	214_I	0.524	1.00
124_L	183_S	0.522	1.00
209_G	214_I	0.522	1.00
361_T	379_K	0.521	1.00
304_L	308_H	0.520	1.00
245_L	248_T	0.520	1.00
317_E	321_D	0.520	1.00
375_D	382_L	0.516	1.00
84_I	424_A	0.515	1.00
325_N	331_Q	0.513	1.00
307_S	328_V	0.511	1.00
345_M	350_L	0.510	1.00
211_E	412_K	0.509	1.00
196_L	202_V	0.509	1.00
62_E	72_A	0.509	1.00
295_E	298_P	0.508	1.00
298_P	302_G	0.508	1.00
154_M	157_E	0.507	1.00
397_R	401_L	0.507	1.00
229_P	237_A	0.505	1.00
295_E	322_E	0.504	1.00
329_V	332_I	0.504	1.00
127_T	363_S	0.503	1.00
377_L	381_N	0.503	1.00
326_R	408_P	0.502	1.00
182_R	273_D	0.501	1.00
386_L	390_P	0.501	1.00
117_T	380_A	0.501	1.00
348_K	391_N	0.501	1.00
83_E	96_K	0.500	1.00
200_Q	204_A	0.500	1.00
255_E	293_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4cqbA	2	0.8348	100	0.401	Contact Map
1ra0A	4	0.8478	100	0.402	Contact Map
3lnpA	2	0.8326	100	0.403	Contact Map
3hpaA	2	0.8217	100	0.405	Contact Map
4dzhA	2	0.8391	100	0.406	Contact Map
4r85A	4	0.8413	100	0.406	Contact Map
3ls9A	2	0.8457	100	0.408	Contact Map
2pajA	2	0.7674	100	0.411	Contact Map
2oodA	2	0.837	100	0.413	Contact Map
4f0rA	2	0.8326	100	0.419	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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