YDJN - ECOLI - GREMLIN Contacts

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YDJN - Uncharacterized symporter YdjN

UniProt:	P77529	Sequences: MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFGLALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSDLSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAAIDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFAVHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFAASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKAILDSEDDAELAHH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13990
Length:	463 (394)
Sequences:	6261 (3711)
Seq/√Len:	187.0

ECOLI - YDJN GLTP DCTA SSTT
BACSU - TCYP GLTT GLTP DCTA
HALSA - Q9HHN5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
177_A	181_G	4.665	1.00
213_E	217_A	3.685	1.00
210_P	213_E	3.233	1.00
128_N	372_I	3.181	1.00
126_V	270_G	3.113	1.00
39_M	242_L	3.085	1.00
107_L	444_L	3.027	1.00
228_K	231_R	3.004	1.00
170_F	192_I	2.982	1.00
85_F	194_A	2.867	1.00
66_N	70_N	2.828	1.00
89_L	219_I	2.741	1.00
313_I	335_A	2.648	1.00
318_E	322_R	2.644	1.00
43_F	242_L	2.634	1.00
32_K	235_Q	2.614	1.00
71_G	171_I	2.579	1.00
214_R	221_T	2.567	1.00
327_P	446_Q	2.558	1.00
442_Q	449_K	2.464	1.00
68_V	243_A	2.458	1.00
131_G	135_E	2.457	1.00
85_F	89_L	2.437	1.00
368_D	371_W	2.432	1.00
322_R	328_E	2.407	1.00
86_A	222_L	2.405	1.00
209_A	212_G	2.301	1.00
327_P	441_S	2.290	1.00
300_L	431_S	2.278	1.00
197_L	225_W	2.258	1.00
268_Y	424_G	2.235	1.00
283_G	286_G	2.192	1.00
126_V	273_I	2.145	1.00
28_S	31_K	2.119	1.00
111_T	436_A	2.109	1.00
265_V	269_L	2.092	1.00
115_T	281_L	2.074	1.00
165_Q	169_S	2.066	1.00
299_V	319_A	2.045	1.00
107_L	443_W	2.006	1.00
130_F	266_A	1.963	1.00
173_K	177_A	1.956	1.00
365_N	368_D	1.929	1.00
42_V	46_A	1.905	1.00
215_V	218_A	1.894	1.00
121_L	125_L	1.888	1.00
34_L	38_V	1.880	1.00
214_R	217_A	1.867	1.00
326_V	438_T	1.862	1.00
358_V	410_L	1.853	1.00
86_A	226_V	1.850	1.00
271_L	424_G	1.841	1.00
94_R	220_D	1.817	1.00
125_L	129_L	1.806	1.00
318_E	323_R	1.801	1.00
127_T	356_V	1.798	1.00
36_G	242_L	1.797	1.00
320_Q	434_M	1.797	1.00
106_F	110_G	1.796	1.00
211_K	224_S	1.772	1.00
418_E	425_R	1.763	1.00
186_S	189_S	1.758	1.00
79_I	233_V	1.744	1.00
132_L	360_P	1.736	1.00
282_L	435_T	1.734	1.00
215_V	221_T	1.733	1.00
201_A	225_W	1.726	1.00
175_P	193_F	1.721	1.00
273_I	276_A	1.717	1.00
130_F	269_L	1.674	1.00
334_A	437_G	1.662	1.00
285_N	442_Q	1.661	1.00
203_K	228_K	1.659	1.00
215_V	225_W	1.659	1.00
103_K	444_L	1.658	1.00
326_V	441_S	1.655	1.00
258_I	262_S	1.629	1.00
176_F	180_T	1.623	1.00
295_K	324_L	1.601	1.00
127_T	353_M	1.589	1.00
291_K	294_R	1.571	1.00
358_V	406_L	1.564	1.00
176_F	179_L	1.557	1.00
296_V	434_M	1.552	1.00
316_N	434_M	1.543	1.00
181_G	186_S	1.539	1.00
126_V	266_A	1.531	1.00
271_L	428_L	1.518	1.00
422_D	426_T	1.506	1.00
71_G	168_L	1.506	1.00
36_G	40_G	1.486	1.00
270_G	349_L	1.475	1.00
362_V	410_L	1.475	1.00
93_A	216_L	1.469	1.00
27_W	31_K	1.465	1.00
43_F	47_L	1.447	1.00
261_G	265_V	1.435	1.00
310_A	388_G	1.434	1.00
77_Q	173_K	1.433	1.00
300_L	427_A	1.428	1.00
295_K	323_R	1.421	1.00
203_K	232_L	1.408	1.00
220_D	224_S	1.400	1.00
200_A	229_L	1.398	1.00
70_N	74_Q	1.383	1.00
218_A	221_T	1.371	1.00
92_V	195_A	1.363	1.00
365_N	370_M	1.361	1.00
138_V	363_G	1.359	1.00
317_V	331_A	1.357	1.00
84_V	187_I	1.343	1.00
169_S	186_S	1.342	1.00
31_K	35_V	1.334	1.00
85_F	179_L	1.331	1.00
290_L	294_R	1.322	1.00
78_M	193_F	1.315	1.00
441_S	447_T	1.312	1.00
330_I	441_S	1.292	1.00
90_S	219_I	1.290	1.00
214_R	218_A	1.281	1.00
171_I	192_I	1.280	1.00
37_L	245_M	1.278	1.00
281_L	439_L	1.277	1.00
124_V	372_I	1.274	1.00
204_L	212_G	1.273	1.00
74_Q	173_K	1.269	1.00
288_S	291_K	1.261	1.00
108_T	334_A	1.256	1.00
327_P	330_I	1.249	1.00
340_T	343_Q	1.241	1.00
27_W	35_V	1.238	1.00
296_V	431_S	1.229	1.00
201_A	215_V	1.229	1.00
369_P	373_A	1.226	1.00
316_N	335_A	1.222	1.00
280_I	283_G	1.210	1.00
197_L	222_L	1.207	1.00
282_L	287_V	1.197	1.00
196_F	229_L	1.195	1.00
79_I	230_V	1.189	1.00
264_V	417_V	1.185	1.00
441_S	445_K	1.178	1.00
279_G	293_F	1.176	1.00
110_G	114_F	1.175	1.00
232_L	236_L	1.170	1.00
266_A	353_M	1.158	1.00
259_K	262_S	1.157	1.00
375_L	404_M	1.155	1.00
355_A	375_L	1.152	1.00
200_A	232_L	1.150	1.00
286_G	442_Q	1.149	1.00
303_A	426_T	1.144	1.00
100_Q	329_S	1.143	1.00
350_Y	418_E	1.142	1.00
195_A	199_V	1.133	1.00
283_G	288_S	1.130	1.00
162_S	165_Q	1.128	1.00
276_A	280_I	1.123	1.00
112_L	334_A	1.117	1.00
32_K	36_G	1.115	1.00
133_T	360_P	1.114	1.00
81_M	190_V	1.110	1.00
344_N	383_S	1.107	1.00
125_L	128_N	1.106	1.00
394_T	415_I	1.095	1.00
298_P	323_R	1.094	1.00
231_R	318_E	1.093	1.00
121_L	376_V	1.089	1.00
292_Y	296_V	1.088	1.00
42_V	45_L	1.088	1.00
226_V	230_V	1.082	1.00
262_S	265_V	1.078	1.00
204_L	221_T	1.075	1.00
316_N	430_V	1.074	1.00
39_M	43_F	1.069	1.00
204_L	225_W	1.067	1.00
71_G	75_L	1.064	1.00
115_T	344_N	1.056	1.00
313_I	339_A	1.055	1.00
365_N	371_W	1.055	1.00
86_A	90_S	1.052	1.00
138_V	141_G	1.052	1.00
287_V	447_T	1.049	1.00
103_K	107_L	1.048	1.00
217_A	221_T	1.048	1.00
312_S	316_N	1.045	1.00
175_P	180_T	1.036	1.00
247_K	251_G	1.034	1.00
274_M	277_V	1.029	1.00
373_A	377_G	1.026	1.00
441_S	446_Q	1.026	1.00
66_N	247_K	1.025	1.00
68_V	236_L	1.023	1.00
138_V	142_A	1.018	1.00
236_L	239_Y	1.013	1.00
307_R	419_P	1.011	1.00
215_V	219_I	1.009	1.00
123_G	352_A	1.007	0.99
104_I	330_I	1.006	0.99
442_Q	445_K	1.006	0.99
276_A	279_G	1.005	0.99
88_I	191_V	0.997	0.99
320_Q	335_A	0.991	0.99
69_G	244_L	0.986	0.99
350_Y	425_R	0.984	0.99
213_E	216_L	0.984	0.99
175_P	182_A	0.983	0.99
177_A	180_T	0.980	0.99
121_L	373_A	0.979	0.99
50_I	64_W	0.979	0.99
346_C	393_A	0.976	0.99
158_V	161_L	0.975	0.99
114_F	118_I	0.968	0.99
320_Q	326_V	0.968	0.99
264_V	420_L	0.968	0.99
38_V	42_V	0.964	0.99
228_K	232_L	0.960	0.99
48_H	250_A	0.958	0.99
217_A	220_D	0.954	0.99
362_V	409_T	0.945	0.99
326_V	331_A	0.942	0.99
174_N	178_D	0.938	0.99
126_V	130_F	0.937	0.99
192_I	196_F	0.936	0.99
49_T	63_Q	0.935	0.99
342_G	433_S	0.932	0.99
122_V	273_I	0.932	0.99
113_L	117_L	0.930	0.99
43_F	246_T	0.927	0.99
161_L	165_Q	0.924	0.99
312_S	315_L	0.924	0.99
278_H	282_L	0.923	0.99
390_G	422_D	0.922	0.99
79_I	229_L	0.921	0.99
274_M	349_L	0.917	0.99
275_F	279_G	0.915	0.99
272_L	275_F	0.913	0.99
117_L	121_L	0.912	0.99
304_F	423_M	0.912	0.99
356_V	372_I	0.911	0.99
369_P	372_I	0.910	0.99
47_L	65_F	0.909	0.99
287_V	291_K	0.908	0.99
163_V	167_V	0.905	0.99
255_Q	258_I	0.903	0.99
319_A	323_R	0.903	0.99
47_L	50_I	0.903	0.99
294_R	297_W	0.899	0.99
28_S	32_K	0.897	0.99
97_N	100_Q	0.895	0.99
196_F	232_L	0.891	0.99
267_S	421_I	0.890	0.99
74_Q	77_Q	0.888	0.99
295_K	319_A	0.886	0.99
164_P	168_L	0.885	0.99
258_I	261_G	0.877	0.99
267_S	353_M	0.874	0.99
351_P	397_A	0.872	0.99
295_K	299_V	0.870	0.99
124_V	128_N	0.864	0.98
197_L	229_L	0.863	0.98
262_S	360_P	0.859	0.98
382_S	400_V	0.856	0.98
26_Q	31_K	0.855	0.98
309_S	429_N	0.855	0.98
269_L	273_I	0.853	0.98
43_F	65_F	0.851	0.98
168_L	172_P	0.850	0.98
86_A	219_I	0.847	0.98
350_Y	421_I	0.844	0.98
27_W	32_K	0.844	0.98
283_G	289_P	0.844	0.98
199_V	203_K	0.843	0.98
299_V	316_N	0.840	0.98
175_P	178_D	0.840	0.98
178_D	193_F	0.838	0.98
343_Q	433_S	0.836	0.98
46_A	50_I	0.833	0.98
242_L	246_T	0.833	0.98
212_G	221_T	0.830	0.98
297_W	301_T	0.830	0.98
264_V	421_I	0.825	0.98
212_G	216_L	0.824	0.98
320_Q	331_A	0.823	0.98
90_S	220_D	0.820	0.98
292_Y	434_M	0.820	0.98
70_N	168_L	0.820	0.98
367_L	371_W	0.819	0.98
246_T	250_A	0.818	0.98
268_Y	272_L	0.813	0.98
302_F	312_S	0.813	0.98
104_I	440_T	0.811	0.98
159_S	162_S	0.809	0.98
194_A	198_G	0.806	0.98
64_W	67_I	0.804	0.98
398_L	411_V	0.803	0.97
89_L	201_A	0.800	0.97
339_A	433_S	0.793	0.97
394_T	411_V	0.792	0.97
299_V	312_S	0.792	0.97
65_F	246_T	0.790	0.97
341_I	384_A	0.789	0.97
118_I	277_V	0.789	0.97
223_Q	227_M	0.789	0.97
201_A	219_I	0.789	0.97
174_N	193_F	0.784	0.97
69_G	240_G	0.781	0.97
302_F	315_L	0.776	0.97
65_F	243_A	0.774	0.97
89_L	194_A	0.773	0.97
330_I	334_A	0.770	0.97
354_L	414_L	0.769	0.97
171_I	174_N	0.766	0.97
72_Y	237_T	0.764	0.97
269_L	272_L	0.764	0.97
161_L	169_S	0.762	0.97
98_A	199_V	0.761	0.97
193_F	197_L	0.760	0.97
441_S	448_D	0.760	0.97
351_P	394_T	0.759	0.96
226_V	233_V	0.757	0.96
93_A	202_L	0.755	0.96
165_Q	168_L	0.755	0.96
87_S	223_Q	0.754	0.96
231_R	235_Q	0.754	0.96
131_G	360_P	0.753	0.96
355_A	400_V	0.752	0.96
282_L	285_N	0.752	0.96
442_Q	447_T	0.752	0.96
89_L	197_L	0.748	0.96
263_F	353_M	0.747	0.96
40_G	246_T	0.747	0.96
247_K	250_A	0.744	0.96
126_V	269_L	0.740	0.96
47_L	246_T	0.739	0.96
266_A	269_L	0.739	0.96
237_T	240_G	0.739	0.96
95_L	104_I	0.738	0.96
218_A	222_L	0.736	0.96
307_R	422_D	0.735	0.96
123_G	353_M	0.735	0.96
263_F	421_I	0.733	0.96
291_K	295_K	0.731	0.96
213_E	218_A	0.731	0.96
372_I	376_V	0.728	0.96
394_T	421_I	0.727	0.96
75_L	171_I	0.727	0.96
122_V	277_V	0.727	0.96
64_W	68_V	0.726	0.95
166_L	172_P	0.725	0.95
264_V	268_Y	0.724	0.95
303_A	430_V	0.722	0.95
263_F	350_Y	0.722	0.95
275_F	280_I	0.720	0.95
192_I	236_L	0.720	0.95
337_F	341_I	0.720	0.95
32_K	239_Y	0.719	0.95
299_V	315_L	0.718	0.95
75_L	196_F	0.716	0.95
33_V	237_T	0.713	0.95
167_V	171_I	0.713	0.95
263_F	271_L	0.711	0.95
166_L	169_S	0.706	0.95
398_L	402_P	0.704	0.95
263_F	414_L	0.703	0.95
209_A	213_E	0.701	0.95
168_L	171_I	0.701	0.95
99_S	102_G	0.701	0.95
302_F	306_S	0.701	0.95
72_Y	236_L	0.699	0.94
157_K	160_D	0.695	0.94
282_L	439_L	0.695	0.94
117_L	380_T	0.694	0.94
267_S	271_L	0.688	0.94
210_P	217_A	0.686	0.94
316_N	433_S	0.686	0.94
178_D	182_A	0.685	0.94
122_V	270_G	0.684	0.94
123_G	349_L	0.683	0.94
169_S	172_P	0.680	0.94
346_C	386_V	0.677	0.93
162_S	166_L	0.675	0.93
260_L	263_F	0.674	0.93
179_L	193_F	0.673	0.93
379_V	396_A	0.673	0.93
224_S	228_K	0.673	0.93
370_M	374_T	0.673	0.93
136_G	139_Q	0.670	0.93
237_T	306_S	0.669	0.93
96_H	99_S	0.667	0.93
374_T	404_M	0.666	0.93
278_H	432_G	0.666	0.93
204_L	224_S	0.664	0.93
370_M	373_A	0.661	0.93
74_Q	169_S	0.660	0.93
100_Q	446_Q	0.659	0.93
179_L	189_S	0.658	0.92
446_Q	449_K	0.658	0.92
62_V	250_A	0.658	0.92
89_L	222_L	0.657	0.92
48_H	63_Q	0.657	0.92
359_A	364_I	0.651	0.92
292_Y	438_T	0.651	0.92
155_V	158_V	0.651	0.92
355_A	359_A	0.648	0.92
100_Q	103_K	0.647	0.92
119_A	274_M	0.645	0.92
335_A	437_G	0.645	0.92
197_L	215_V	0.641	0.92
346_C	351_P	0.641	0.92
275_F	282_L	0.640	0.91
62_V	247_K	0.639	0.91
230_V	304_F	0.639	0.91
128_N	369_P	0.638	0.91
63_Q	250_A	0.638	0.91
212_G	225_W	0.636	0.91
378_I	403_A	0.636	0.91
384_A	433_S	0.635	0.91
386_V	396_A	0.634	0.91
126_V	265_V	0.633	0.91
112_L	274_M	0.633	0.91
241_V	390_G	0.633	0.91
108_T	440_T	0.631	0.91
110_G	113_L	0.631	0.91
388_G	391_G	0.630	0.91
287_V	295_K	0.628	0.91
133_T	136_G	0.627	0.91
97_N	105_S	0.627	0.91
328_E	332_S	0.625	0.90
49_T	250_A	0.622	0.90
239_Y	243_A	0.620	0.90
240_G	244_L	0.619	0.90
138_V	143_E	0.619	0.90
339_A	343_Q	0.618	0.90
376_V	379_V	0.618	0.90
296_V	316_N	0.617	0.90
367_L	375_L	0.616	0.90
71_G	192_I	0.615	0.90
355_A	358_V	0.615	0.90
220_D	223_Q	0.614	0.90
351_P	386_V	0.614	0.90
118_I	122_V	0.612	0.90
263_F	354_L	0.610	0.89
68_V	239_Y	0.609	0.89
284_I	439_L	0.609	0.89
139_Q	142_A	0.606	0.89
270_G	353_M	0.606	0.89
292_Y	324_L	0.605	0.89
221_T	224_S	0.605	0.89
351_P	355_A	0.605	0.89
270_G	274_M	0.602	0.89
113_L	384_A	0.600	0.89
40_G	44_G	0.600	0.89
120_A	380_T	0.600	0.89
126_V	129_L	0.598	0.88
388_G	392_G	0.596	0.88
215_V	222_L	0.596	0.88
112_L	433_S	0.596	0.88
343_Q	386_V	0.593	0.88
317_V	335_A	0.592	0.88
262_S	266_A	0.592	0.88
136_G	262_S	0.591	0.88
172_P	175_P	0.591	0.88
119_A	349_L	0.591	0.88
112_L	436_A	0.589	0.88
294_R	298_P	0.587	0.88
135_E	139_Q	0.585	0.87
352_A	379_V	0.583	0.87
310_A	339_A	0.581	0.87
330_I	446_Q	0.578	0.87
221_T	225_W	0.575	0.86
228_K	235_Q	0.574	0.86
156_G	159_S	0.573	0.86
90_S	216_L	0.573	0.86
274_M	344_N	0.573	0.86
265_V	268_Y	0.573	0.86
75_L	233_V	0.573	0.86
362_V	407_P	0.572	0.86
287_V	448_D	0.572	0.86
393_A	400_V	0.572	0.86
100_Q	105_S	0.572	0.86
83_L	191_V	0.571	0.86
324_L	438_T	0.571	0.86
116_T	347_A	0.571	0.86
78_M	229_L	0.569	0.86
325_G	448_D	0.569	0.86
410_L	413_L	0.567	0.86
312_S	339_A	0.566	0.86
40_G	245_M	0.566	0.86
358_V	396_A	0.565	0.85
114_F	281_L	0.564	0.85
191_V	362_V	0.563	0.85
81_M	179_L	0.562	0.85
327_P	331_A	0.561	0.85
80_V	392_G	0.561	0.85
118_I	121_L	0.560	0.85
90_S	94_R	0.560	0.85
81_M	187_I	0.560	0.85
344_N	432_G	0.558	0.85
216_L	220_D	0.558	0.85
172_P	176_F	0.557	0.85
235_Q	239_Y	0.557	0.85
115_T	119_A	0.555	0.84
123_G	350_Y	0.552	0.84
260_L	264_V	0.551	0.84
204_L	228_K	0.551	0.84
140_G	143_E	0.550	0.84
37_L	423_M	0.549	0.84
312_S	430_V	0.548	0.84
35_V	39_M	0.546	0.84
201_A	216_L	0.546	0.84
75_L	236_L	0.546	0.84
132_L	136_G	0.545	0.83
131_G	356_V	0.545	0.83
407_P	410_L	0.544	0.83
439_L	443_W	0.544	0.83
76_L	302_F	0.543	0.83
278_H	281_L	0.542	0.83
130_F	262_S	0.541	0.83
346_C	392_G	0.540	0.83
437_G	441_S	0.540	0.83
398_L	408_V	0.539	0.83
112_L	338_G	0.539	0.83
104_I	444_L	0.538	0.83
383_S	395_F	0.538	0.83
124_V	376_V	0.538	0.83
103_K	106_F	0.537	0.83
303_A	422_D	0.536	0.82
346_C	425_R	0.536	0.82
157_K	161_L	0.536	0.82
43_F	50_I	0.536	0.82
141_G	144_T	0.535	0.82
95_L	437_G	0.535	0.82
315_L	318_E	0.535	0.82
307_R	311_A	0.535	0.82
128_N	356_V	0.535	0.82
408_V	411_V	0.534	0.82
48_H	62_V	0.533	0.82
155_V	159_S	0.532	0.82
29_L	32_K	0.532	0.82
174_N	180_T	0.532	0.82
431_S	435_T	0.531	0.82
109_I	341_I	0.531	0.82
36_G	246_T	0.530	0.82
376_V	380_T	0.530	0.82
154_Y	157_K	0.530	0.82
211_K	217_A	0.530	0.82
268_Y	271_L	0.530	0.82
227_M	263_F	0.527	0.81
346_C	422_D	0.527	0.81
354_L	418_E	0.526	0.81
326_V	437_G	0.526	0.81
45_L	254_L	0.524	0.81
445_K	449_K	0.524	0.81
173_K	181_G	0.524	0.81
386_V	393_A	0.523	0.81
37_L	241_V	0.522	0.81
281_L	284_I	0.522	0.81
303_A	427_A	0.521	0.81
211_K	214_R	0.521	0.81
180_T	186_S	0.520	0.80
292_Y	431_S	0.520	0.80
322_R	331_A	0.519	0.80
43_F	46_A	0.519	0.80
83_L	226_V	0.519	0.80
106_F	109_I	0.518	0.80
405_G	409_T	0.518	0.80
200_A	204_L	0.518	0.80
178_D	181_G	0.517	0.80
327_P	445_K	0.516	0.80
429_N	433_S	0.516	0.80
29_L	35_V	0.515	0.80
43_F	48_H	0.514	0.80
371_W	374_T	0.514	0.80
345_G	428_L	0.513	0.80
365_N	369_P	0.510	0.79
277_V	281_L	0.508	0.79
292_Y	435_T	0.507	0.79
200_A	225_W	0.507	0.79
174_N	177_A	0.507	0.79
201_A	221_T	0.506	0.79
419_P	423_M	0.505	0.79
296_V	324_L	0.505	0.79
98_A	105_S	0.503	0.78
166_L	170_F	0.501	0.78
329_S	446_Q	0.501	0.78
338_G	437_G	0.501	0.78
179_L	190_V	0.500	0.78
374_T	378_I	0.500	0.78
186_S	190_V	0.500	0.78
296_V	300_L	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2nwlA	3	0.8488	100	0.128	Contact Map
4bgnA	3	0.4233	22.7	0.97	Contact Map
2zy9A	2	0.2635	6.2	0.977	Contact Map
4gofA	2	0.1123	4.4	0.979	Contact Map
1ji6A	1	0.1901	3.8	0.979	Contact Map
2m8rA	1	0.1123	3.6	0.979	Contact Map
4czbA	2	0.5745	3.1	0.98	Contact Map
2gsvA	3	0.0972	2.6	0.981	Contact Map
2c9kA	1	0.1965	2.6	0.981	Contact Map
4n8fA	3	0.1706	2.5	0.981	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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