GREMLIN Database
YBCY - Putative uncharacterized protein YbcY
UniProt: P77460 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13641
Length: 194 (186)
Sequences: 289 (248)
Seq/√Len: 18.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
166_L186_V4.3711.00
4_S150_Y4.2301.00
115_R173_H4.1031.00
21_F95_S4.0711.00
167_T171_S3.9081.00
78_D81_E3.3251.00
28_N48_L3.0660.99
139_H143_G2.7710.98
178_K189_S2.7350.98
32_I117_A2.6950.98
5_N13_T2.6930.98
94_I121_L2.6610.98
29_H93_S2.5900.97
49_I66_A2.5090.96
137_V162_S2.1790.92
41_T68_E2.1660.92
4_S146_L2.0700.90
143_G184_T2.0490.90
5_N98_Y2.0310.89
52_M83_Y1.9760.88
126_T182_Q1.9460.87
26_G92_D1.8870.85
50_S75_I1.8090.83
18_L30_L1.7880.82
8_A142_F1.7870.82
32_I127_L1.7190.79
34_V99_L1.7150.79
132_I185_V1.6680.77
179_T186_V1.6550.77
66_A100_L1.6140.75
117_A127_L1.5920.74
97_S130_A1.5860.73
114_I169_I1.5370.71
31_D39_Y1.5180.70
107_I166_L1.4850.68
31_D99_L1.4470.66
41_T69_S1.4450.66
16_H19_P1.3910.63
121_L125_G1.3820.63
98_Y185_V1.3800.62
31_D59_L1.3710.62
139_H184_T1.3560.61
103_L113_V1.3380.60
94_I120_A1.3130.58
20_H189_S1.3100.58
8_A19_P1.3040.58
34_V38_F1.2790.56
19_P97_S1.2610.55
179_T189_S1.2370.54
168_H172_E1.2330.54
140_N143_G1.2190.53
116_N119_Q1.2190.53
49_I153_K1.1990.52
123_D187_M1.1870.51
5_N150_Y1.1630.49
162_S165_G1.1560.49
10_G132_I1.1490.48
49_I74_K1.1360.48
10_G184_T1.1240.47
96_M130_A1.1090.46
111_S173_H1.1000.45
36_T62_A1.0980.45
70_K179_T1.0890.45
24_H189_S1.0890.45
132_I153_K1.0880.45
4_S148_R1.0880.45
167_T186_V1.0870.45
164_E167_T1.0750.44
47_S69_S1.0590.43
31_D36_T1.0540.43
147_M151_N1.0520.43
97_S128_Y1.0480.42
19_P50_S1.0460.42
13_T37_G1.0340.41
94_I125_G1.0320.41
132_I143_G1.0300.41
58_S61_A1.0280.41
100_L165_G1.0260.41
35_G53_D1.0210.41
136_G184_T1.0190.41
163_E181_V1.0120.40
21_F133_L1.0080.40
112_C162_S0.9950.39
31_D95_S0.9910.39
103_L159_T0.9860.39
158_N161_D0.9840.38
4_S132_I0.9830.38
52_M162_S0.9740.38
147_M184_T0.9690.38
50_S83_Y0.9640.37
79_V92_D0.9630.37
79_V113_V0.9610.37
83_Y120_A0.9540.37
136_G162_S0.9460.36
67_G152_Q0.9460.36
106_N109_T0.9450.36
164_E175_E0.9430.36
39_Y97_S0.9400.36
171_S177_V0.9370.36
161_D183_G0.9350.36
85_A132_I0.9330.36
56_E124_D0.9300.35
5_N11_C0.9260.35
63_S112_C0.9260.35
151_N161_D0.9220.35
30_L52_M0.9190.35
40_L128_Y0.9180.35
63_S68_E0.9130.34
31_D66_A0.9110.34
115_R172_E0.9040.34
34_V154_G0.9030.34
132_I145_K0.9000.34
43_V69_S0.8990.34
28_N89_G0.8970.34
94_I127_L0.8930.33
41_T165_G0.8900.33
16_H20_H0.8880.33
8_A140_N0.8860.33
134_G139_H0.8830.33
119_Q125_G0.8610.32
110_K129_G0.8570.31
58_S150_Y0.8550.31
17_L130_A0.8520.31
43_V97_S0.8310.30
137_V181_V0.8290.30
131_T158_N0.8280.30
77_H116_N0.8270.30
33_G99_L0.8270.30
78_D103_L0.8270.30
31_D42_H0.8250.30
52_M157_S0.8250.30
34_V58_S0.8250.30
25_L78_D0.8230.30
33_G131_T0.8220.30
84_P117_A0.8190.29
166_L170_L0.8180.29
9_W156_F0.8160.29
41_T65_R0.8150.29
11_C161_D0.8090.29
18_L52_M0.8090.29
21_F24_H0.8070.29
54_L82_P0.8030.29
129_G151_N0.8010.28
37_G51_L0.8000.28
132_I146_L0.8000.28
4_S8_A0.7950.28
13_T97_S0.7910.28
127_L188_F0.7880.28
166_L179_T0.7880.28
99_L102_C0.7850.28
11_C37_G0.7840.28
53_D59_L0.7820.27
78_D125_G0.7810.27
112_C116_N0.7780.27
52_M77_H0.7760.27
151_N155_I0.7670.27
29_H33_G0.7670.27
134_G143_G0.7660.27
4_S17_L0.7600.26
133_L137_V0.7570.26
79_V103_L0.7550.26
82_P116_N0.7510.26
17_L150_Y0.7460.26
27_N47_S0.7450.26
54_L99_L0.7410.26
84_P120_A0.7400.25
25_L128_Y0.7400.25
18_L191_S0.7320.25
59_L100_L0.7320.25
146_L150_Y0.7320.25
151_N158_N0.7260.25
37_G161_D0.7250.25
93_S158_N0.7250.25
93_S128_Y0.7240.25
119_Q152_Q0.7200.25
165_G191_S0.7160.24
26_G29_H0.7150.24
13_T17_L0.7150.24
56_E68_E0.7140.24
8_A146_L0.7100.24
85_A175_E0.7000.24
49_I173_H0.6960.23
18_L84_P0.6940.23
51_L131_T0.6900.23
49_I106_N0.6870.23
83_Y192_G0.6860.23
41_T115_R0.6780.23
118_A173_H0.6760.23
52_M78_D0.6760.23
79_V159_T0.6750.23
16_H180_K0.6730.22
40_L80_F0.6720.22
65_R154_G0.6710.22
7_L62_A0.6690.22
55_N102_C0.6620.22
13_T19_P0.6600.22
161_D174_F0.6590.22
78_D154_G0.6540.22
48_L89_G0.6520.22
81_E171_S0.6460.21
48_L184_T0.6450.21
92_D122_T0.6410.21
114_I120_A0.6410.21
36_T49_I0.6400.21
131_T151_N0.6340.21
136_G181_V0.6330.21
62_A186_V0.6330.21
145_K153_K0.6320.21
55_N99_L0.6300.21
107_I186_V0.6260.21
27_N44_P0.6220.20
64_T171_S0.6160.20
114_I161_D0.6140.20
161_D170_L0.6100.20
4_S31_D0.6100.20
176_N191_S0.6090.20
3_V26_G0.6070.20
34_V192_G0.6050.20
102_C151_N0.6040.20
33_G51_L0.6040.20
48_L73_H0.5990.19
94_I117_A0.5980.19
16_H97_S0.5950.19
110_K170_L0.5930.19
63_S71_I0.5930.19
65_R188_F0.5920.19
79_V124_D0.5920.19
3_V62_A0.5920.19
145_K185_V0.5880.19
34_V153_K0.5870.19
122_T175_E0.5870.19
134_G140_N0.5870.19
28_N122_T0.5830.19
27_N192_G0.5820.19
110_K156_F0.5780.19
79_V165_G0.5740.18
65_R82_P0.5740.18
35_G70_K0.5710.18
3_V56_E0.5640.18
133_L162_S0.5640.18
55_N132_I0.5600.18
21_F33_G0.5600.18
162_S181_V0.5580.18
42_H70_K0.5550.18
111_S136_G0.5540.18
8_A139_H0.5540.18
11_C128_Y0.5520.18
17_L32_I0.5500.18
37_G182_Q0.5490.18
21_F131_T0.5480.18
60_N75_I0.5470.18
52_M168_H0.5470.18
102_C183_G0.5450.17
31_D120_A0.5450.17
103_L142_F0.5390.17
25_L103_L0.5350.17
44_P47_S0.5350.17
10_G144_Q0.5320.17
11_C51_L0.5320.17
105_G151_N0.5310.17
52_M191_S0.5300.17
13_T39_Y0.5280.17
135_D138_V0.5280.17
40_L102_C0.5280.17
115_R157_S0.5270.17
33_G40_L0.5260.17
4_S153_K0.5260.17
40_L54_L0.5250.17
46_S112_C0.5240.17
17_L31_D0.5180.16
32_I48_L0.5140.16
23_E187_M0.5110.16
17_L34_V0.5090.16
83_Y92_D0.5090.16
89_G175_E0.5040.16
117_A174_F0.5030.16
141_S168_H0.5020.16
28_N81_E0.5010.16
51_L161_D0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4obxA 2 0.9278 99.8 0.733 Contact Map
1vl5A 1 0.9072 99.8 0.746 Contact Map
3fzgA 1 0.8557 99.8 0.746 Contact Map
4kriA 1 0.9381 99.8 0.747 Contact Map
3mczA 2 0.9588 99.8 0.748 Contact Map
2a14A 1 0.9381 99.7 0.749 Contact Map
2i62A 1 0.933 99.7 0.749 Contact Map
4krgA 1 0.9485 99.7 0.749 Contact Map
3ujcA 1 0.9536 99.7 0.75 Contact Map
1ve3A 2 0.9536 99.7 0.75 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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