YBAT - ECOLI - GREMLIN Contacts

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YBAT - Inner membrane transport protein YbaT

UniProt:	P77400	Sequences: MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQFLHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13248
Length:	430 (407)
Sequences:	24613 (15821)
Seq/√Len:	784.2

ECOLI - YBAT POTE PUUP FRLA ANSP GABP PROY LYSP AROP PLAP ADIC YIFK PHEP MMUP CYCA GADC YJEH CADB YJEM YCAM YGJI ARCD TNAB MTR TYRP
BACSU - STET YHDG ASPP YBXG YTNA YFNA YVBW YBEC YBGF YDGF YCGH ROCC GABP AAPA HUTM ROCE YECA ARCD YDAO GERAB GERBB YNDE GERKB YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97X49 Q97XM0 Q97WS3 Q97Z63 Q97ZB5 Q7LXI7 Q97VA6 Q97WD4 Q97U33 Q97VR4 Q97VA8 Q97YN3 Q97Y76 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
322_W	326_T	4.285	1.00
316_L	327_W	4.174	1.00
143_T	333_V	4.129	1.00
54_G	238_T	3.286	1.00
224_V	228_R	3.017	1.00
319_K	327_W	3.013	1.00
323_R	326_T	2.873	1.00
14_G	220_K	2.863	1.00
219_V	225_I	2.831	1.00
361_L	392_I	2.720	1.00
78_I	310_E	2.703	1.00
95_S	307_M	2.651	1.00
308_G	318_N	2.628	1.00
221_D	224_V	2.624	1.00
175_G	247_V	2.615	1.00
19_V	232_V	2.592	1.00
316_L	319_K	2.495	1.00
322_W	325_S	2.478	1.00
173_I	177_W	2.429	1.00
136_L	337_M	2.428	1.00
276_V	280_I	2.361	1.00
15_L	232_V	2.340	1.00
217_D	309_S	2.302	1.00
218_K	302_N	2.229	1.00
66_R	371_R	2.219	1.00
186_V	189_P	2.206	1.00
267_Q	270_S	2.206	1.00
389_L	393_V	2.202	1.00
82_R	91_S	2.197	1.00
85_L	369_R	2.182	1.00
135_A	340_T	2.177	1.00
305_D	309_S	2.176	1.00
144_L	148_L	2.159	1.00
15_L	19_V	2.149	1.00
15_L	225_I	2.135	1.00
18_V	219_V	2.087	1.00
151_H	155_R	2.078	1.00
256_E	271_P	2.026	1.00
228_R	232_V	2.011	1.00
140_A	337_M	1.996	1.00
63_A	364_F	1.981	1.00
364_F	391_V	1.964	1.00
162_G	166_M	1.958	1.00
311_R	315_K	1.950	1.00
330_I	334_V	1.934	1.00
14_G	17_N	1.933	1.00
82_R	87_N	1.929	1.00
38_A	46_T	1.915	1.00
384_G	388_M	1.907	1.00
19_V	236_V	1.902	1.00
9_G	320_S	1.895	1.00
55_I	59_F	1.893	1.00
143_T	329_N	1.868	1.00
419_I	423_V	1.848	1.00
253_S	256_E	1.810	1.00
393_V	397_Y	1.809	1.00
85_L	365_V	1.789	1.00
221_D	225_I	1.755	1.00
81_F	94_L	1.743	1.00
413_S	417_S	1.737	1.00
96_L	417_S	1.729	1.00
17_N	158_V	1.726	1.00
267_Q	271_P	1.726	1.00
146_N	294_N	1.722	1.00
317_M	331_I	1.706	1.00
231_L	235_G	1.702	1.00
99_L	332_V	1.664	1.00
180_Q	183_H	1.663	1.00
49_A	198_C	1.663	1.00
140_A	333_V	1.662	1.00
22_G	233_A	1.657	1.00
94_L	362_A	1.652	1.00
411_I	415_L	1.639	1.00
45_S	195_F	1.637	1.00
110_A	293_I	1.636	1.00
130_L	133_L	1.616	1.00
13_L	17_N	1.607	1.00
166_M	170_L	1.596	1.00
321_L	325_S	1.582	1.00
386_L	390_L	1.579	1.00
117_A	134_Y	1.558	1.00
147_S	330_I	1.557	1.00
55_I	390_L	1.549	1.00
418_L	422_M	1.530	1.00
106_I	336_I	1.529	1.00
129_H	133_L	1.525	1.00
369_R	372_H	1.520	1.00
136_L	340_T	1.520	1.00
235_G	239_L	1.510	1.00
215_A	298_F	1.505	1.00
167_I	284_G	1.500	1.00
383_V	387_V	1.500	1.00
86_G	90_F	1.495	1.00
110_A	139_I	1.486	1.00
397_Y	401_S	1.472	1.00
61_G	234_I	1.453	1.00
139_I	336_I	1.447	1.00
327_W	331_I	1.438	1.00
305_D	320_S	1.437	1.00
9_G	305_D	1.432	1.00
113_F	138_I	1.432	1.00
165_M	169_L	1.426	1.00
221_D	228_R	1.422	1.00
85_L	90_F	1.419	1.00
315_K	318_N	1.414	1.00
365_V	369_R	1.408	1.00
176_V	247_V	1.407	1.00
279_V	283_I	1.404	1.00
222_P	227_P	1.404	1.00
403_G	406_A	1.392	1.00
270_S	278_Y	1.388	1.00
136_L	140_A	1.386	1.00
315_K	319_K	1.381	1.00
74_N	217_D	1.376	1.00
53_G	202_T	1.376	1.00
17_N	154_G	1.366	1.00
81_F	362_A	1.365	1.00
56_V	394_G	1.360	1.00
179_L	250_S	1.354	1.00
261_A	267_Q	1.346	1.00
270_S	275_H	1.344	1.00
139_I	333_V	1.340	1.00
61_G	230_F	1.329	1.00
374_I	378_L	1.321	1.00
71_Y	83_R	1.314	1.00
225_I	228_R	1.308	1.00
113_F	286_L	1.299	1.00
13_L	18_V	1.296	1.00
60_S	364_F	1.293	1.00
388_M	392_I	1.285	1.00
16_W	20_S	1.284	1.00
62_Y	231_L	1.282	1.00
59_F	390_L	1.277	1.00
405_R	408_I	1.274	1.00
385_T	389_L	1.273	1.00
373_D	376_A	1.265	1.00
239_L	243_S	1.262	1.00
304_M	328_G	1.261	1.00
321_L	324_Q	1.260	1.00
143_T	330_I	1.259	1.00
172_I	243_S	1.255	1.00
70_S	378_L	1.252	1.00
175_G	251_D	1.252	1.00
109_V	292_A	1.249	1.00
142_M	293_I	1.246	1.00
273_L	277_G	1.244	1.00
395_F	398_S	1.240	1.00
408_I	411_I	1.233	1.00
13_L	154_G	1.230	1.00
304_M	313_L	1.227	1.00
15_L	228_R	1.225	1.00
26_M	237_T	1.222	1.00
84_G	366_V	1.217	1.00
79_D	83_R	1.207	1.00
407_L	411_I	1.203	1.00
47_W	246_L	1.201	1.00
132_L	136_L	1.195	1.00
171_L	175_G	1.188	1.00
404_S	408_I	1.179	1.00
327_W	330_I	1.173	1.00
374_I	377_S	1.172	1.00
33_A	112_A	1.162	1.00
64_Y	77_I	1.158	1.00
391_V	395_F	1.157	1.00
387_V	401_S	1.156	1.00
22_G	212_M	1.156	1.00
301_F	329_N	1.156	1.00
383_V	388_M	1.152	1.00
66_R	69_A	1.151	1.00
23_I	236_V	1.124	1.00
148_L	323_R	1.123	1.00
145_F	156_L	1.123	1.00
12_P	220_K	1.122	1.00
18_V	229_A	1.122	1.00
375_H	378_L	1.121	1.00
92_L	96_L	1.119	1.00
396_I	400_W	1.118	1.00
412_G	416_L	1.116	1.00
420_V	423_V	1.114	1.00
73_S	79_D	1.112	1.00
68_G	80_F	1.110	1.00
220_K	225_I	1.108	1.00
170_L	174_A	1.103	1.00
99_L	304_M	1.101	1.00
191_S	194_A	1.100	1.00
300_V	332_V	1.098	1.00
10_N	324_Q	1.098	1.00
157_E	294_N	1.095	1.00
81_F	90_F	1.090	1.00
412_G	415_L	1.088	1.00
21_I	215_A	1.085	1.00
417_S	420_V	1.083	1.00
383_V	386_L	1.077	1.00
404_S	407_L	1.077	1.00
392_I	396_I	1.072	1.00
45_S	188_A	1.070	1.00
386_L	389_L	1.067	1.00
143_T	147_S	1.065	1.00
63_A	388_M	1.064	1.00
365_V	392_I	1.061	1.00
309_S	318_N	1.059	1.00
78_I	306_N	1.049	1.00
117_A	286_L	1.048	1.00
133_L	137_G	1.037	1.00
408_I	412_G	1.037	1.00
39_A	46_T	1.035	1.00
147_S	321_L	1.033	1.00
405_R	409_W	1.032	1.00
156_L	160_L	1.032	1.00
114_G	134_Y	1.030	1.00
169_L	173_I	1.029	1.00
140_A	144_L	1.022	1.00
117_A	121_L	1.021	1.00
137_G	141_V	1.017	1.00
73_S	83_R	1.013	1.00
136_L	341_A	1.000	1.00
368_I	389_L	0.991	1.00
155_R	159_I	0.989	1.00
388_M	401_S	0.983	1.00
23_I	237_T	0.981	1.00
387_V	391_V	0.978	1.00
51_A	242_I	0.977	1.00
253_S	271_P	0.977	1.00
187_S	190_P	0.976	1.00
388_M	402_Q	0.971	1.00
70_S	376_A	0.970	1.00
171_L	269_A	0.968	1.00
261_A	264_A	0.966	1.00
207_A	356_F	0.963	1.00
399_L	402_Q	0.960	1.00
150_N	298_F	0.958	1.00
160_L	291_S	0.952	1.00
361_L	396_I	0.951	1.00
210_G	214_N	0.947	1.00
410_I	414_L	0.947	1.00
417_S	421_A	0.946	1.00
320_S	324_Q	0.946	1.00
391_V	394_G	0.940	1.00
165_M	240_L	0.939	1.00
172_I	247_V	0.938	1.00
96_L	313_L	0.933	1.00
192_S	195_F	0.931	1.00
9_G	218_K	0.931	1.00
395_F	399_L	0.931	1.00
361_L	365_V	0.930	1.00
385_T	388_M	0.929	1.00
141_V	290_A	0.929	1.00
108_M	349_A	0.926	1.00
367_A	388_M	0.923	1.00
75_G	78_I	0.921	1.00
216_A	226_M	0.916	1.00
384_G	387_V	0.911	1.00
354_A	410_I	0.909	1.00
114_G	135_A	0.908	1.00
388_M	395_F	0.907	1.00
172_I	176_V	0.907	1.00
12_P	151_H	0.906	1.00
27_V	30_G	0.905	1.00
238_T	242_I	0.905	1.00
47_W	249_L	0.903	1.00
186_V	190_P	0.898	1.00
20_S	158_V	0.898	1.00
246_L	250_S	0.895	1.00
83_R	373_D	0.891	1.00
142_M	294_N	0.885	1.00
9_G	302_N	0.885	1.00
75_G	79_D	0.881	1.00
337_M	340_T	0.879	1.00
382_I	386_L	0.879	1.00
17_N	155_R	0.869	1.00
351_V	355_T	0.867	1.00
232_V	236_V	0.867	1.00
373_D	377_S	0.865	1.00
409_W	412_G	0.864	1.00
54_G	206_Y	0.862	1.00
371_R	374_I	0.862	1.00
394_G	401_S	0.855	1.00
382_I	388_M	0.853	1.00
113_F	289_T	0.852	1.00
415_L	419_I	0.852	1.00
108_M	204_L	0.851	1.00
334_V	338_L	0.847	1.00
82_R	310_E	0.845	1.00
197_S	201_I	0.845	1.00
317_M	327_W	0.843	1.00
118_V	131_I	0.843	1.00
196_F	397_Y	0.843	1.00
192_S	196_F	0.840	1.00
407_L	410_I	0.839	1.00
51_A	55_I	0.839	1.00
114_G	131_I	0.838	1.00
313_L	317_M	0.836	1.00
69_A	379_P	0.831	1.00
164_K	288_A	0.830	1.00
155_R	158_V	0.829	1.00
251_D	268_A	0.828	1.00
403_G	407_L	0.828	1.00
16_W	158_V	0.827	1.00
147_S	325_S	0.824	1.00
70_S	379_P	0.823	1.00
376_A	379_P	0.819	1.00
382_I	387_V	0.818	1.00
90_F	362_A	0.817	1.00
113_F	290_A	0.814	1.00
388_M	394_G	0.813	1.00
372_H	375_H	0.813	1.00
48_V	195_F	0.811	1.00
67_L	367_A	0.806	1.00
134_Y	137_G	0.803	1.00
144_L	147_S	0.801	1.00
211_M	299_A	0.801	1.00
368_I	372_H	0.798	1.00
274_G	277_G	0.798	1.00
263_T	267_Q	0.798	1.00
15_L	229_A	0.796	1.00
368_I	388_M	0.793	1.00
333_V	337_M	0.793	1.00
383_V	402_Q	0.788	1.00
384_G	389_L	0.786	1.00
297_L	333_V	0.781	1.00
58_M	62_Y	0.780	1.00
221_D	227_P	0.777	1.00
416_L	420_V	0.776	1.00
58_M	231_L	0.776	1.00
207_A	360_Y	0.774	1.00
142_M	297_L	0.773	1.00
148_L	152_A	0.770	1.00
184_I	250_S	0.768	1.00
81_F	366_V	0.767	1.00
59_F	63_A	0.766	1.00
413_S	420_V	0.762	1.00
12_P	150_N	0.761	1.00
397_Y	400_W	0.760	1.00
382_I	385_T	0.759	1.00
406_A	410_I	0.759	1.00
188_A	195_F	0.758	1.00
390_L	401_S	0.758	1.00
176_V	243_S	0.758	1.00
329_N	332_V	0.756	1.00
98_Y	102_L	0.756	1.00
378_L	381_L	0.753	1.00
19_V	229_A	0.753	1.00
48_V	51_A	0.746	1.00
408_I	413_S	0.745	1.00
344_N	347_S	0.740	1.00
179_L	247_V	0.738	1.00
16_W	155_R	0.735	1.00
111_R	348_L	0.732	1.00
304_M	331_I	0.731	1.00
154_G	158_V	0.730	1.00
146_N	298_F	0.730	1.00
24_G	161_V	0.729	1.00
394_G	398_S	0.724	1.00
84_G	369_R	0.722	1.00
406_A	409_W	0.719	1.00
416_L	419_I	0.718	1.00
227_P	230_F	0.716	1.00
302_N	305_D	0.716	1.00
26_M	233_A	0.716	1.00
31_I	244_L	0.715	1.00
60_S	395_F	0.712	1.00
25_A	295_A	0.704	1.00
67_L	80_F	0.703	1.00
101_T	356_F	0.701	1.00
48_V	52_F	0.700	1.00
132_L	135_A	0.700	1.00
388_M	391_V	0.700	1.00
329_N	336_I	0.698	1.00
27_V	164_K	0.695	1.00
316_L	331_I	0.695	1.00
78_I	82_R	0.689	1.00
44_A	249_L	0.689	1.00
368_I	385_T	0.687	1.00
370_L	374_I	0.685	1.00
74_N	305_D	0.685	1.00
107_A	348_L	0.684	1.00
194_A	197_S	0.683	1.00
392_I	395_F	0.681	1.00
331_I	335_L	0.680	1.00
38_A	42_M	0.679	1.00
9_G	12_P	0.678	1.00
172_I	244_L	0.674	1.00
391_V	402_Q	0.673	1.00
57_A	209_F	0.673	1.00
102_L	296_N	0.671	1.00
394_G	397_Y	0.670	1.00
275_H	279_V	0.670	1.00
244_L	265_V	0.668	1.00
47_W	51_A	0.666	1.00
419_I	422_M	0.666	1.00
70_S	374_I	0.666	1.00
236_V	240_L	0.664	1.00
174_A	274_G	0.663	1.00
276_V	279_V	0.661	1.00
116_Y	285_A	0.659	1.00
105_S	352_A	0.658	1.00
85_L	366_V	0.651	1.00
19_V	22_G	0.651	1.00
152_A	155_R	0.651	1.00
138_I	293_I	0.650	1.00
308_G	317_M	0.650	1.00
103_A	335_L	0.649	1.00
78_I	95_S	0.649	1.00
114_G	117_A	0.648	1.00
97_L	101_T	0.648	1.00
27_V	240_L	0.646	1.00
174_A	178_S	0.646	1.00
414_L	418_L	0.645	1.00
297_L	301_F	0.645	1.00
413_S	421_A	0.644	1.00
182_A	185_S	0.644	1.00
259_K	262_D	0.643	1.00
410_I	413_S	0.640	1.00
64_Y	363_V	0.639	1.00
409_W	413_S	0.639	1.00
217_D	305_D	0.638	1.00
16_W	19_V	0.636	1.00
411_I	414_L	0.636	1.00
104_V	351_V	0.636	1.00
367_A	371_R	0.635	1.00
147_S	329_N	0.635	1.00
393_V	396_I	0.634	1.00
301_F	328_G	0.634	1.00
243_S	247_V	0.634	1.00
140_A	143_T	0.633	1.00
373_D	378_L	0.633	1.00
41_L	197_S	0.633	1.00
390_L	394_G	0.632	1.00
146_N	329_N	0.632	1.00
264_A	269_A	0.629	1.00
46_T	245_A	0.628	1.00
97_L	359_C	0.626	1.00
154_G	294_N	0.625	1.00
142_M	290_A	0.622	1.00
61_G	209_F	0.622	1.00
413_S	416_L	0.622	1.00
247_V	250_S	0.621	1.00
47_W	242_I	0.621	1.00
384_G	401_S	0.619	1.00
407_L	413_S	0.618	1.00
50_F	205_A	0.617	1.00
66_R	382_I	0.617	1.00
109_V	293_I	0.615	1.00
163_I	167_I	0.614	1.00
117_A	138_I	0.613	1.00
12_P	16_W	0.612	1.00
355_T	359_C	0.611	1.00
68_G	226_M	0.611	1.00
139_I	340_T	0.610	1.00
364_F	392_I	0.610	1.00
219_V	226_M	0.609	1.00
269_A	273_L	0.608	1.00
22_G	26_M	0.607	1.00
328_G	331_I	0.606	1.00
132_L	340_T	0.604	1.00
384_G	391_V	0.604	1.00
68_G	213_A	0.603	1.00
25_A	296_N	0.603	1.00
236_V	239_L	0.601	1.00
403_G	408_I	0.601	1.00
110_A	114_G	0.601	1.00
103_A	332_V	0.600	1.00
411_I	420_V	0.598	1.00
398_S	401_S	0.598	1.00
214_N	299_A	0.597	1.00
37_Q	346_G	0.596	1.00
152_A	156_L	0.596	1.00
338_L	341_A	0.595	1.00
361_L	395_F	0.595	1.00
66_R	380_I	0.594	1.00
120_F	283_I	0.593	1.00
163_I	284_G	0.593	1.00
232_V	235_G	0.590	1.00
410_I	415_L	0.590	1.00
183_H	186_V	0.589	1.00
411_I	417_S	0.588	1.00
62_Y	382_I	0.587	1.00
244_L	248_L	0.586	1.00
65_A	69_A	0.586	1.00
120_F	282_V	0.585	1.00
319_K	322_W	0.585	1.00
346_G	349_A	0.585	1.00
404_S	411_I	0.584	1.00
105_S	108_M	0.584	1.00
184_I	249_L	0.584	1.00
52_F	199_I	0.582	1.00
180_Q	184_I	0.580	1.00
119_Q	282_V	0.579	1.00
283_I	287_L	0.577	1.00
77_I	214_N	0.576	1.00
222_P	225_I	0.576	1.00
412_G	419_I	0.576	1.00
14_G	151_H	0.574	1.00
35_L	245_A	0.574	1.00
399_L	407_L	0.571	1.00
392_I	399_L	0.570	1.00
141_V	145_F	0.570	1.00
288_A	291_S	0.570	1.00
213_A	230_F	0.570	1.00
340_T	343_L	0.569	1.00
398_S	402_Q	0.569	1.00
140_A	330_I	0.568	1.00
372_H	385_T	0.566	1.00
385_T	402_Q	0.566	1.00
78_I	91_S	0.565	1.00
77_I	210_G	0.565	1.00
42_M	49_A	0.565	1.00
251_D	272_L	0.565	1.00
150_N	215_A	0.564	1.00
158_V	162_G	0.564	1.00
53_G	206_Y	0.563	1.00
334_V	337_M	0.563	1.00
329_N	333_V	0.562	1.00
395_F	402_Q	0.561	1.00
370_L	378_L	0.560	1.00
61_G	65_A	0.559	1.00
34_L	349_A	0.558	1.00
109_V	112_A	0.557	1.00
248_L	265_V	0.556	1.00
207_A	210_G	0.556	1.00
406_A	413_S	0.555	1.00
412_G	417_S	0.555	1.00
316_L	320_S	0.554	1.00
382_I	401_S	0.551	1.00
28_G	241_Y	0.551	1.00
302_N	320_S	0.548	1.00
143_T	297_L	0.546	1.00
149_S	152_A	0.546	1.00
226_M	230_F	0.544	1.00
81_F	91_S	0.544	1.00
9_G	74_N	0.544	1.00
44_A	47_W	0.542	1.00
67_L	84_G	0.542	1.00
384_G	392_I	0.541	1.00
115_A	131_I	0.541	1.00
84_G	370_L	0.541	1.00
25_A	211_M	0.541	1.00
153_V	298_F	0.540	1.00
224_V	227_P	0.539	1.00
405_R	410_I	0.539	1.00
35_L	39_A	0.539	1.00
59_F	387_V	0.539	1.00
300_V	304_M	0.536	1.00
101_T	355_T	0.536	1.00
391_V	401_S	0.534	1.00
236_V	243_S	0.534	1.00
259_K	263_T	0.533	1.00
66_R	70_S	0.533	1.00
388_M	399_L	0.532	1.00
157_E	164_K	0.532	1.00
161_V	164_K	0.532	1.00
99_L	103_A	0.532	1.00
410_I	417_S	0.531	1.00
31_I	34_L	0.531	1.00
31_I	168_L	0.530	1.00
207_A	352_A	0.530	1.00
107_A	339_M	0.529	1.00
38_A	198_C	0.528	1.00
37_Q	41_L	0.526	1.00
193_G	196_F	0.524	1.00
37_Q	40_L	0.523	1.00
356_F	359_C	0.523	1.00
139_I	337_M	0.520	1.00
205_A	241_Y	0.520	1.00
382_I	394_G	0.520	1.00
418_L	421_A	0.520	1.00
185_S	188_A	0.520	1.00
138_I	290_A	0.519	1.00
280_I	284_G	0.518	1.00
269_A	277_G	0.518	1.00
387_V	394_G	0.518	1.00
31_I	35_L	0.518	1.00
396_I	399_L	0.515	1.00
414_L	417_S	0.515	1.00
159_I	162_G	0.514	1.00
60_S	210_G	0.514	1.00
403_G	413_S	0.513	1.00
179_L	251_D	0.513	1.00
392_I	401_S	0.512	1.00
174_A	273_L	0.511	1.00
210_G	360_Y	0.511	1.00
47_W	50_F	0.510	1.00
137_G	140_A	0.510	1.00
264_A	268_A	0.509	1.00
110_A	142_M	0.509	1.00
91_S	95_S	0.509	1.00
65_A	230_F	0.508	1.00
167_I	280_I	0.508	1.00
23_I	161_V	0.508	1.00
175_G	179_L	0.507	1.00
13_L	150_N	0.507	1.00
131_I	135_A	0.507	1.00
304_M	308_G	0.507	1.00
94_L	359_C	0.507	1.00
86_G	91_S	0.506	1.00
411_I	422_M	0.506	1.00
218_K	320_S	0.506	1.00
390_L	393_V	0.505	1.00
375_H	381_L	0.505	1.00
45_S	187_S	0.505	1.00
166_M	169_L	0.504	1.00
371_R	384_G	0.504	1.00
20_S	161_V	0.504	1.00
163_I	287_L	0.504	1.00
106_I	293_I	0.502	1.00
219_V	229_A	0.502	1.00
366_V	370_L	0.501	1.00
212_M	226_M	0.501	1.00
53_G	203_F	0.500	1.00
138_I	142_M	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9488	100	0.252	Contact Map
3giaA	1	0.9721	100	0.286	Contact Map
4djkA	2	0.9302	100	0.332	Contact Map
2jlnA	1	0.9163	98.5	0.869	Contact Map
3dh4A	3	0.9186	98.4	0.874	Contact Map
2xq2A	2	0.914	98.2	0.88	Contact Map
4wgvA	2	0.8186	97.5	0.897	Contact Map
4xp4A	1	0.9488	96.8	0.908	Contact Map
4us3A	1	0.8814	96.6	0.91	Contact Map
2a65A	2	0.9488	96.5	0.911	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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