YBBY - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YBBY - Putative purine permease YbbY

UniProt:	P77328	Sequences: MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13620
Length:	433 (388)
Sequences:	4285 (2212)
Seq/√Len:	112.3

ECOLI - YBBY UACT XANP XANQ URAA RUTG
BACSU - YWDJ PUCK PBUX PUCJ PYRP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
178_A	209_L	5.363	1.00
182_L	205_T	5.257	1.00
154_M	176_S	4.266	1.00
141_M	416_G	4.106	1.00
183_V	202_G	3.897	1.00
52_L	331_A	3.720	1.00
226_W	335_A	3.702	1.00
208_L	212_F	3.464	1.00
219_S	223_E	3.407	1.00
386_V	419_L	3.192	1.00
186_M	201_V	3.110	1.00
175_L	210_W	3.063	1.00
113_L	246_V	3.019	1.00
108_A	292_V	2.887	1.00
175_L	215_P	2.882	1.00
218_H	221_S	2.807	1.00
55_A	328_L	2.767	1.00
178_A	205_T	2.701	1.00
375_R	428_P	2.631	1.00
383_P	420_A	2.631	1.00
224_L	335_A	2.610	1.00
180_M	354_V	2.576	1.00
18_F	326_I	2.482	1.00
102_S	236_A	2.473	1.00
260_I	280_S	2.409	1.00
14_G	322_Y	2.405	1.00
57_A	287_M	2.403	1.00
204_I	208_L	2.237	1.00
67_R	274_N	2.222	1.00
53_A	294_L	2.201	1.00
207_W	216_S	2.188	1.00
264_D	272_A	2.155	1.00
175_L	213_C	2.152	1.00
11_L	326_I	2.146	1.00
178_A	182_L	2.132	1.00
59_F	324_S	2.120	1.00
174_A	178_A	2.099	1.00
10_S	322_Y	2.080	1.00
221_S	339_L	2.080	1.00
208_L	211_Y	2.074	1.00
182_L	186_M	2.047	1.00
222_G	225_H	2.036	1.00
129_L	425_N	2.032	1.00
182_L	209_L	2.017	1.00
59_F	321_I	1.992	1.00
314_D	319_S	1.987	1.00
62_A	321_I	1.972	1.00
32_L	82_I	1.964	1.00
101_T	236_A	1.930	1.00
422_L	426_L	1.901	1.00
220_L	342_S	1.890	1.00
108_A	289_L	1.879	1.00
171_P	215_P	1.862	1.00
104_A	292_V	1.850	1.00
207_W	342_S	1.842	1.00
52_L	328_L	1.815	1.00
183_V	351_V	1.807	1.00
170_L	174_A	1.789	1.00
209_L	213_C	1.783	1.00
185_A	189_F	1.764	1.00
144_A	360_L	1.761	1.00
224_L	338_R	1.750	1.00
212_F	215_P	1.717	1.00
325_V	329_L	1.706	1.00
186_M	190_L	1.701	1.00
131_T	424_D	1.681	1.00
273_G	276_R	1.666	1.00
153_G	345_L	1.665	1.00
18_F	323_G	1.650	1.00
102_S	106_G	1.621	1.00
103_L	106_G	1.612	1.00
108_A	112_V	1.611	1.00
115_M	289_L	1.597	1.00
276_R	279_R	1.589	1.00
219_S	222_G	1.588	1.00
221_S	224_L	1.575	1.00
194_F	201_V	1.551	1.00
174_A	177_V	1.551	1.00
54_T	71_M	1.539	1.00
193_R	197_Y	1.519	1.00
190_L	194_F	1.519	1.00
83_L	86_T	1.513	1.00
379_R	423_M	1.507	1.00
180_M	382_L	1.497	1.00
177_V	181_C	1.486	1.00
270_Q	273_G	1.470	1.00
206_G	347_V	1.469	1.00
220_L	223_E	1.467	1.00
383_P	419_L	1.451	1.00
115_M	285_G	1.444	1.00
133_S	380_L	1.443	1.00
238_S	241_I	1.428	1.00
269_Q	276_R	1.425	1.00
112_V	116_L	1.424	1.00
171_P	213_C	1.411	1.00
59_F	62_A	1.410	1.00
17_W	305_S	1.396	1.00
101_T	105_V	1.375	1.00
181_C	185_A	1.371	1.00
99_I	102_S	1.368	1.00
111_G	118_G	1.364	1.00
209_L	212_F	1.360	1.00
79_W	83_L	1.360	1.00
86_T	103_L	1.354	1.00
85_I	241_I	1.354	1.00
4_F	318_R	1.345	1.00
107_I	111_G	1.344	1.00
386_V	415_V	1.340	1.00
309_L	315_Y	1.331	1.00
211_Y	218_H	1.326	1.00
108_A	111_G	1.325	1.00
418_L	422_L	1.311	1.00
370_I	376_N	1.311	1.00
335_A	338_R	1.305	0.99
21_I	25_T	1.303	0.99
166_F	169_Q	1.302	0.99
101_T	237_L	1.295	0.99
205_T	209_L	1.286	0.99
263_T	309_L	1.281	0.99
190_L	195_A	1.272	0.99
58_C	71_M	1.267	0.99
372_F	380_L	1.263	0.99
52_L	294_L	1.257	0.99
111_G	289_L	1.255	0.99
8_R	12_L	1.252	0.99
63_F	321_I	1.247	0.99
197_Y	201_V	1.240	0.99
59_F	328_L	1.235	0.99
105_V	237_L	1.226	0.99
265_V	369_Q	1.224	0.99
62_A	320_F	1.214	0.99
406_R	410_S	1.209	0.99
70_I	263_T	1.204	0.99
56_L	328_L	1.201	0.99
115_M	286_F	1.197	0.99
155_L	167_K	1.185	0.99
118_G	278_R	1.179	0.99
171_P	174_A	1.175	0.99
259_A	303_V	1.172	0.99
89_E	238_S	1.171	0.99
201_V	205_T	1.165	0.99
82_I	103_L	1.146	0.99
237_L	242_I	1.141	0.99
102_S	107_I	1.132	0.99
115_M	119_F	1.130	0.99
151_F	389_F	1.128	0.99
382_L	419_L	1.127	0.98
106_G	110_S	1.124	0.98
85_I	245_A	1.123	0.98
228_W	334_P	1.120	0.98
133_S	137_L	1.119	0.98
141_M	387_G	1.114	0.98
75_G	252_N	1.111	0.98
73_G	302_F	1.108	0.98
110_S	249_G	1.105	0.98
405_L	408_L	1.104	0.98
105_V	110_S	1.101	0.98
256_T	260_I	1.099	0.98
64_C	286_F	1.096	0.98
77_L	252_N	1.082	0.98
115_M	282_V	1.082	0.98
105_V	242_I	1.081	0.98
174_A	213_C	1.080	0.98
5_A	316_T	1.077	0.98
106_G	114_T	1.075	0.98
178_A	213_C	1.071	0.98
255_N	300_S	1.070	0.98
107_I	292_V	1.066	0.98
72_E	301_P	1.048	0.98
333_V	337_T	1.045	0.98
384_L	388_I	1.044	0.98
56_L	290_I	1.043	0.97
329_L	333_V	1.041	0.97
107_I	114_T	1.037	0.97
111_G	282_V	1.032	0.97
260_I	284_T	1.026	0.97
106_G	111_G	1.020	0.97
81_T	248_T	1.019	0.97
114_T	118_G	1.015	0.97
171_P	175_L	1.015	0.97
7_S	11_L	1.012	0.97
231_L	234_G	1.009	0.97
259_A	306_I	1.008	0.97
104_A	107_I	1.007	0.97
210_W	214_F	1.002	0.97
65_G	279_R	0.999	0.97
185_A	426_L	0.997	0.97
5_A	10_S	0.992	0.97
20_F	308_L	0.992	0.97
118_G	121_G	0.988	0.97
109_L	242_I	0.987	0.97
107_I	110_S	0.985	0.96
191_P	195_A	0.978	0.96
291_T	299_F	0.977	0.96
28_V	76_G	0.974	0.96
11_L	15_F	0.973	0.96
165_N	168_I	0.966	0.96
70_I	301_P	0.965	0.96
181_C	184_L	0.963	0.96
147_T	385_F	0.962	0.96
99_I	103_L	0.959	0.96
5_A	319_S	0.955	0.96
211_Y	216_S	0.955	0.96
175_L	209_L	0.954	0.96
378_Y	382_L	0.953	0.96
394_P	409_L	0.949	0.96
140_L	384_L	0.947	0.96
267_Y	315_Y	0.943	0.95
105_V	118_G	0.942	0.95
361_F	377_I	0.942	0.95
405_L	409_L	0.941	0.95
210_W	215_P	0.940	0.95
105_V	111_G	0.938	0.95
200_L	204_I	0.935	0.95
318_R	321_I	0.934	0.95
105_V	109_L	0.932	0.95
56_L	60_A	0.929	0.95
71_M	323_G	0.923	0.95
110_S	114_T	0.922	0.95
15_F	326_I	0.921	0.95
256_T	280_S	0.918	0.95
84_T	87_L	0.917	0.95
97_N	236_A	0.912	0.95
221_S	342_S	0.908	0.94
239_P	242_I	0.906	0.94
59_F	325_V	0.903	0.94
61_Q	68_R	0.902	0.94
182_L	202_G	0.901	0.94
11_L	322_Y	0.897	0.94
290_I	294_L	0.891	0.94
84_T	88_G	0.890	0.94
99_I	105_V	0.884	0.94
17_W	21_I	0.875	0.93
102_S	238_S	0.874	0.93
172_P	346_P	0.873	0.93
145_Q	413_L	0.871	0.93
101_T	104_A	0.870	0.93
152_K	167_K	0.868	0.93
4_F	10_S	0.867	0.93
17_W	20_F	0.866	0.93
124_H	278_R	0.859	0.93
256_T	284_T	0.856	0.93
373_T	376_N	0.853	0.92
169_Q	172_P	0.852	0.92
140_L	364_L	0.852	0.92
24_N	356_Y	0.848	0.92
336_L	339_L	0.848	0.92
240_G	244_T	0.848	0.92
98_D	236_A	0.840	0.92
321_I	324_S	0.835	0.92
62_A	317_R	0.835	0.92
229_F	332_L	0.833	0.91
139_M	259_A	0.831	0.91
207_W	343_I	0.829	0.91
217_S	220_L	0.825	0.91
6_V	9_E	0.824	0.91
207_W	218_H	0.820	0.91
156_G	167_K	0.815	0.91
153_G	356_Y	0.814	0.91
75_G	300_S	0.813	0.90
257_Y	277_Y	0.812	0.90
24_N	304_S	0.809	0.90
186_M	194_F	0.805	0.90
208_L	329_L	0.804	0.90
186_M	202_G	0.795	0.89
321_I	325_V	0.794	0.89
55_A	324_S	0.790	0.89
375_R	379_R	0.788	0.89
79_W	250_L	0.788	0.89
104_A	110_S	0.788	0.89
379_R	383_P	0.788	0.89
48_Q	337_T	0.786	0.89
354_V	378_Y	0.786	0.89
50_A	297_I	0.785	0.89
130_F	417_I	0.785	0.89
71_M	320_F	0.781	0.89
180_M	184_L	0.778	0.88
381_A	385_F	0.778	0.88
168_I	388_I	0.778	0.88
21_I	305_S	0.772	0.88
70_I	260_I	0.772	0.88
330_V	336_L	0.770	0.88
306_I	309_L	0.770	0.88
226_W	333_V	0.769	0.88
229_F	331_A	0.769	0.88
28_V	74_P	0.769	0.88
155_L	173_F	0.763	0.87
252_N	300_S	0.762	0.87
53_A	290_I	0.762	0.87
360_L	384_L	0.761	0.87
53_A	291_T	0.759	0.87
13_S	17_W	0.759	0.87
103_L	107_I	0.754	0.87
275_T	279_R	0.753	0.87
74_P	78_W	0.753	0.87
77_L	355_S	0.752	0.87
30_P	348_S	0.752	0.87
80_G	83_L	0.749	0.86
53_A	296_V	0.747	0.86
386_V	390_L	0.747	0.86
27_V	153_G	0.745	0.86
312_T	326_I	0.745	0.86
25_T	54_T	0.744	0.86
390_L	415_V	0.743	0.86
153_G	348_S	0.742	0.86
49_Y	52_L	0.742	0.86
112_V	227_Q	0.739	0.86
18_F	330_V	0.736	0.86
70_I	308_L	0.736	0.86
250_L	254_S	0.735	0.85
100_A	104_A	0.735	0.85
225_H	228_W	0.734	0.85
357_L	361_F	0.733	0.85
156_G	168_I	0.732	0.85
175_L	346_P	0.732	0.85
288_T	299_F	0.731	0.85
137_L	383_P	0.731	0.85
250_L	262_G	0.731	0.85
11_L	222_G	0.726	0.85
270_Q	275_T	0.721	0.84
50_A	74_P	0.720	0.84
286_F	290_I	0.720	0.84
101_T	232_G	0.719	0.84
194_F	198_G	0.718	0.84
125_R	129_L	0.717	0.84
109_L	113_L	0.716	0.84
111_G	285_G	0.715	0.84
129_L	421_V	0.715	0.84
21_I	71_M	0.712	0.84
25_T	50_A	0.710	0.83
114_T	249_G	0.706	0.83
256_T	300_S	0.705	0.83
382_L	423_M	0.705	0.83
361_F	380_L	0.702	0.83
150_F	176_S	0.701	0.83
69_A	320_F	0.700	0.83
171_P	209_L	0.698	0.82
23_C	29_P	0.698	0.82
109_L	237_L	0.697	0.82
102_S	105_V	0.697	0.82
221_S	338_R	0.690	0.82
372_F	376_N	0.690	0.82
177_V	213_C	0.685	0.81
202_G	205_T	0.685	0.81
187_I	311_Q	0.684	0.81
416_G	420_A	0.684	0.81
116_L	120_S	0.682	0.81
75_G	78_W	0.682	0.81
98_D	101_T	0.678	0.81
263_T	301_P	0.674	0.80
216_S	342_S	0.673	0.80
14_G	323_G	0.673	0.80
139_M	142_L	0.672	0.80
263_T	306_I	0.670	0.80
186_M	198_G	0.670	0.80
49_Y	53_A	0.669	0.80
338_R	341_C	0.668	0.80
210_W	213_C	0.663	0.79
203_T	351_V	0.663	0.79
107_I	118_G	0.662	0.79
218_H	342_S	0.661	0.79
412_G	416_G	0.660	0.79
154_M	353_L	0.660	0.79
150_F	179_V	0.660	0.79
387_G	416_G	0.658	0.79
185_A	190_L	0.656	0.78
152_K	155_L	0.656	0.78
239_P	243_L	0.656	0.78
105_V	108_A	0.655	0.78
182_L	201_V	0.654	0.78
56_L	294_L	0.654	0.78
172_P	175_L	0.653	0.78
112_V	115_M	0.653	0.78
199_L	308_L	0.652	0.78
110_S	118_G	0.651	0.78
326_I	330_V	0.650	0.78
155_L	168_I	0.649	0.78
267_Y	270_Q	0.649	0.78
149_I	153_G	0.648	0.77
89_E	99_I	0.648	0.77
183_V	364_L	0.648	0.77
211_Y	426_L	0.647	0.77
221_S	335_A	0.646	0.77
102_S	111_G	0.643	0.77
187_I	378_Y	0.640	0.77
173_F	177_V	0.640	0.77
190_L	193_R	0.638	0.76
280_S	284_T	0.637	0.76
229_F	250_L	0.637	0.76
72_E	256_T	0.637	0.76
50_A	54_T	0.636	0.76
113_L	253_I	0.635	0.76
255_N	284_T	0.634	0.76
224_L	334_P	0.634	0.76
186_M	205_T	0.634	0.76
385_F	388_I	0.631	0.76
77_L	142_L	0.631	0.76
83_L	87_L	0.630	0.75
133_S	376_N	0.629	0.75
213_C	336_L	0.629	0.75
4_F	7_S	0.627	0.75
118_G	282_V	0.625	0.75
86_T	99_I	0.625	0.75
204_I	339_L	0.623	0.75
268_P	315_Y	0.622	0.75
17_W	308_L	0.621	0.74
188_I	359_L	0.620	0.74
252_N	255_N	0.619	0.74
246_V	249_G	0.619	0.74
338_R	342_S	0.617	0.74
140_L	367_S	0.615	0.74
68_R	280_S	0.615	0.74
174_A	209_L	0.614	0.74
188_I	361_F	0.614	0.74
289_L	293_P	0.613	0.73
37_Q	87_L	0.613	0.73
25_T	28_V	0.612	0.73
266_F	310_T	0.611	0.73
310_T	365_V	0.611	0.73
114_T	252_N	0.611	0.73
27_V	30_P	0.611	0.73
249_G	288_T	0.610	0.73
325_V	369_Q	0.607	0.73
329_L	408_L	0.607	0.73
110_S	117_I	0.606	0.73
203_T	348_S	0.606	0.73
38_L	297_I	0.604	0.72
203_T	254_S	0.604	0.72
219_S	224_L	0.603	0.72
379_R	428_P	0.603	0.72
372_F	377_I	0.603	0.72
259_A	301_P	0.600	0.72
205_T	208_L	0.600	0.72
169_Q	174_A	0.600	0.72
196_R	428_P	0.598	0.72
80_G	84_T	0.597	0.72
357_L	377_I	0.597	0.72
82_I	86_T	0.597	0.72
147_T	381_A	0.595	0.71
167_K	170_L	0.595	0.71
60_A	283_A	0.594	0.71
147_T	388_I	0.592	0.71
167_K	393_L	0.592	0.71
227_Q	333_V	0.592	0.71
104_A	111_G	0.590	0.71
153_G	352_M	0.589	0.71
245_A	346_P	0.588	0.70
66_H	276_R	0.588	0.70
195_A	372_F	0.588	0.70
131_T	307_G	0.588	0.70
82_I	245_A	0.587	0.70
367_S	370_I	0.586	0.70
142_L	302_F	0.586	0.70
99_I	111_G	0.585	0.70
7_S	326_I	0.584	0.70
257_Y	261_R	0.583	0.70
208_L	222_G	0.582	0.70
303_V	362_S	0.582	0.70
226_W	230_P	0.578	0.69
99_I	106_G	0.577	0.69
135_M	334_P	0.575	0.69
288_T	291_T	0.575	0.69
365_V	369_Q	0.575	0.69
77_L	300_S	0.575	0.69
89_E	98_D	0.573	0.68
25_T	327_C	0.573	0.68
156_G	173_F	0.572	0.68
21_I	365_V	0.572	0.68
259_A	362_S	0.572	0.68
348_S	351_V	0.570	0.68
201_V	204_I	0.570	0.68
89_E	241_I	0.569	0.68
137_L	372_F	0.568	0.68
303_V	414_L	0.567	0.68
380_L	384_L	0.566	0.67
15_F	155_L	0.566	0.67
304_S	356_Y	0.565	0.67
258_G	387_G	0.564	0.67
89_E	102_S	0.562	0.67
286_F	289_L	0.562	0.67
124_H	128_R	0.562	0.67
31_T	83_L	0.561	0.67
125_R	130_F	0.561	0.67
183_V	354_V	0.561	0.67
32_L	39_P	0.560	0.67
284_T	300_S	0.559	0.67
55_A	59_F	0.559	0.67
105_V	114_T	0.559	0.67
72_E	288_T	0.557	0.66
57_A	283_A	0.556	0.66
7_S	10_S	0.555	0.66
105_V	119_F	0.554	0.66
32_L	203_T	0.554	0.66
99_I	109_L	0.554	0.66
53_A	287_M	0.553	0.66
114_T	253_I	0.552	0.66
207_W	211_Y	0.552	0.66
136_V	363_A	0.552	0.66
286_F	321_I	0.552	0.66
387_G	412_G	0.551	0.65
74_P	300_S	0.551	0.65
233_S	422_L	0.549	0.65
111_G	288_T	0.548	0.65
230_P	354_V	0.548	0.65
360_L	364_L	0.548	0.65
371_T	376_N	0.547	0.65
5_A	428_P	0.547	0.65
138_F	180_M	0.546	0.65
417_I	420_A	0.544	0.64
421_V	429_W	0.544	0.64
252_N	260_I	0.543	0.64
404_T	407_P	0.543	0.64
305_S	308_L	0.542	0.64
130_F	192_Q	0.540	0.64
52_L	332_L	0.540	0.64
111_G	114_T	0.538	0.64
317_R	321_I	0.538	0.64
204_I	426_L	0.537	0.63
143_G	150_F	0.537	0.63
106_G	118_G	0.537	0.63
102_S	241_I	0.536	0.63
61_Q	317_R	0.536	0.63
262_G	362_S	0.536	0.63
206_G	214_F	0.535	0.63
88_G	221_S	0.535	0.63
133_S	379_R	0.534	0.63
178_A	212_F	0.532	0.63
382_L	388_I	0.532	0.63
108_A	234_G	0.532	0.63
199_L	268_P	0.531	0.63
59_F	63_F	0.530	0.62
244_T	408_L	0.530	0.62
391_M	394_P	0.529	0.62
114_T	282_V	0.528	0.62
54_T	70_I	0.528	0.62
211_Y	214_F	0.528	0.62
61_Q	65_G	0.528	0.62
137_L	420_A	0.526	0.62
314_D	348_S	0.526	0.62
101_T	107_I	0.525	0.62
218_H	328_L	0.524	0.62
69_A	267_Y	0.524	0.62
18_F	244_T	0.524	0.62
147_T	353_L	0.523	0.61
123_G	257_Y	0.522	0.61
318_R	322_Y	0.522	0.61
58_C	300_S	0.522	0.61
208_L	227_Q	0.522	0.61
113_L	117_I	0.520	0.61
250_L	404_T	0.520	0.61
368_Q	377_I	0.520	0.61
13_S	130_F	0.520	0.61
289_L	292_V	0.519	0.61
19_F	379_R	0.519	0.61
78_W	288_T	0.518	0.61
116_L	422_L	0.518	0.61
54_T	248_T	0.517	0.61
264_D	269_Q	0.517	0.61
145_Q	412_G	0.517	0.61
185_A	422_L	0.517	0.61
85_I	244_T	0.514	0.60
81_T	412_G	0.514	0.60
261_R	313_G	0.514	0.60
125_R	274_N	0.513	0.60
187_I	198_G	0.513	0.60
370_I	377_I	0.513	0.60
102_S	110_S	0.513	0.60
365_V	373_T	0.513	0.60
39_P	89_E	0.511	0.60
166_F	172_P	0.511	0.60
89_E	236_A	0.511	0.60
49_Y	295_A	0.511	0.60
72_E	260_I	0.510	0.60
260_I	272_A	0.507	0.59
264_D	268_P	0.507	0.59
331_A	337_T	0.507	0.59
22_F	50_A	0.506	0.59
129_L	424_D	0.506	0.59
27_V	31_T	0.504	0.59
58_C	324_S	0.502	0.58
52_L	313_G	0.500	0.58
212_F	229_F	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.9122	100	0.402	Contact Map
3o7qA	1	0.8568	55.2	0.966	Contact Map
2nwlA	3	0.4965	31.6	0.971	Contact Map
4ikvA	1	0.9145	24.7	0.972	Contact Map
2jlnA	1	0.8037	20.9	0.973	Contact Map
3wdoA	1	0.8661	16.3	0.974	Contact Map
3mktA	1	0.9376	16.2	0.974	Contact Map
4xnjA	1	0.8776	14.4	0.975	Contact Map
2gfpA	2	0.4088	13.9	0.975	Contact Map
2cfqA	1	0.8845	12.2	0.976	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0117 seconds.