GREMLIN Database
YBAP - Uncharacterized protein YbaP
UniProt: P77301 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13244
Length: 264 (247)
Sequences: 1312 (1104)
Seq/√Len: 70.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
39_S247_A6.2441.00
222_D227_Q5.6531.00
91_S94_Q4.5191.00
236_L246_V3.7841.00
37_I245_V3.3361.00
248_V259_L3.2351.00
58_L144_L3.1101.00
226_H257_G3.1041.00
64_L144_L3.0531.00
36_L260_P2.9091.00
58_L151_Q2.8091.00
222_D226_H2.7031.00
163_N231_A2.6401.00
116_P169_L2.5921.00
66_V145_L2.5191.00
61_A245_V2.4871.00
204_P207_N2.4711.00
157_E160_G2.4651.00
84_E89_R2.4321.00
236_L239_M2.4201.00
87_E113_S2.3801.00
230_L262_M2.3481.00
163_N167_M2.3351.00
175_G179_L2.2981.00
24_I37_I2.2251.00
65_I156_I2.2211.00
233_R259_L2.1861.00
225_M251_L2.1781.00
163_N235_K2.1611.00
66_V141_D2.1141.00
212_L251_L2.1011.00
221_Y226_H1.9981.00
86_L120_I1.9941.00
160_G163_N1.9601.00
94_Q180_D1.9331.00
144_L247_A1.9291.00
57_K245_V1.9001.00
37_I54_L1.8991.00
34_F236_L1.8281.00
249_G252_H1.7901.00
65_I232_W1.7321.00
38_G41_H1.6921.00
258_N262_M1.6711.00
199_W207_N1.6530.99
62_D243_R1.6300.99
41_H249_G1.6240.99
228_R249_G1.5910.99
66_V157_E1.5860.99
66_V155_V1.5610.99
121_A178_L1.5530.99
65_I246_V1.5180.99
102_S112_F1.5090.99
43_G47_M1.4860.99
80_L89_R1.4750.99
228_R252_H1.4740.99
85_A88_E1.4140.98
41_H252_H1.3930.98
29_P32_R1.3910.98
63_A244_Y1.3840.98
94_Q97_N1.3650.98
87_E95_L1.3450.98
26_I33_H1.3430.98
232_W259_L1.2970.97
63_A156_I1.2760.97
233_R258_N1.2620.97
99_Q108_S1.2590.97
172_P175_G1.2580.97
221_Y257_G1.2550.96
115_Q119_Q1.2510.96
233_R237_R1.2430.96
116_P175_G1.2040.96
97_N184_T1.1970.95
41_H228_R1.1920.95
23_A37_I1.1800.95
63_A154_P1.1760.95
78_A119_Q1.1750.95
27_T34_F1.1690.95
234_D237_R1.1620.95
180_D183_L1.1610.95
141_D148_A1.1580.94
47_M201_L1.1560.94
28_L33_H1.1310.94
162_E166_A1.1280.94
84_E88_E1.1050.93
231_A235_K1.1030.93
98_L183_L1.0970.93
146_Q150_Q1.0920.93
239_M246_V1.0920.93
232_W235_K1.0900.92
54_L245_V1.0720.92
58_L153_K1.0560.91
147_A150_Q1.0520.91
140_I200_W1.0490.91
200_W203_A1.0450.91
83_C117_L1.0410.91
36_L259_L1.0400.91
40_I140_I1.0370.90
52_T55_L1.0360.90
226_H230_L1.0350.90
27_T30_G1.0310.90
68_A157_E1.0300.90
139_G200_W1.0300.90
188_T219_S1.0280.90
223_V227_Q1.0270.90
82_A85_A1.0190.90
65_I158_L1.0170.90
258_N261_Q1.0050.89
28_L31_N0.9930.88
35_H245_V0.9920.88
43_G139_G0.9860.88
148_A153_K0.9810.88
34_F258_N0.9800.88
199_W204_P0.9790.88
54_L57_K0.9770.88
24_I57_K0.9680.87
204_P208_N0.9590.87
230_L257_G0.9570.87
23_A200_W0.9530.86
81_P84_E0.9490.86
26_I35_H0.9480.86
34_F239_M0.9450.86
121_A182_T0.9420.86
49_P143_Q0.9380.85
47_M197_M0.9370.85
79_N115_Q0.9350.85
40_I197_M0.9330.85
160_G164_Q0.9280.85
206_Q209_D0.9260.85
53_R56_K0.9250.85
118_W175_G0.9200.84
27_T263_L0.9190.84
158_L232_W0.9170.84
232_W248_V0.9130.84
22_P232_W0.9100.84
31_N34_F0.9100.84
67_E249_G0.9100.84
110_S113_S0.9100.84
32_R241_P0.9030.83
61_A243_R0.8980.83
221_Y225_M0.8970.83
59_K151_Q0.8930.83
57_K61_A0.8910.82
44_S47_M0.8860.82
100_H104_E0.8820.82
64_L155_V0.8810.82
55_L147_A0.8760.81
48_A143_Q0.8680.81
58_L247_A0.8670.81
235_K238_A0.8650.80
191_R195_Q0.8650.80
27_T246_V0.8580.80
254_Y258_N0.8520.79
95_L99_Q0.8490.79
236_L263_L0.8450.79
227_Q231_A0.8450.79
256_E261_Q0.8400.79
94_Q184_T0.8390.78
22_P200_W0.8380.78
45_H138_Y0.8360.78
233_R262_M0.8310.78
58_L147_A0.8270.77
40_I43_G0.8250.77
99_Q109_P0.8200.77
166_A170_Q0.8190.77
250_A254_Y0.8150.76
121_A175_G0.8130.76
66_V70_V0.8130.76
38_G228_R0.8120.76
34_F244_Y0.8060.76
55_L246_V0.8020.75
86_L141_D0.7960.75
80_L84_E0.7920.74
69_D72_T0.7900.74
257_G261_Q0.7870.74
94_Q176_L0.7860.74
117_L175_G0.7860.74
213_P221_Y0.7840.74
185_H188_T0.7810.73
21_W204_P0.7790.73
167_M223_V0.7750.73
118_W169_L0.7730.73
50_L54_L0.7730.73
170_Q223_V0.7700.72
97_N187_H0.7680.72
63_A242_G0.7650.72
72_T157_E0.7560.71
209_D254_Y0.7540.71
70_V145_L0.7520.70
59_K62_D0.7520.70
27_T153_K0.7460.70
231_A234_D0.7400.69
198_S202_N0.7380.69
97_N180_D0.7370.69
117_L176_L0.7340.69
43_G140_I0.7340.69
99_Q103_Q0.7330.68
42_M126_A0.7330.68
24_I245_V0.7240.68
24_I27_T0.7220.67
229_N253_L0.7190.67
96_Q100_H0.7190.67
24_I54_L0.7180.67
46_D140_I0.7150.67
254_Y260_P0.7150.67
44_S141_D0.7110.66
49_P200_W0.7100.66
138_Y143_Q0.7080.66
43_G141_D0.7050.65
248_V253_L0.7050.65
50_L55_L0.7020.65
163_N166_A0.7010.65
199_W211_T0.7000.65
38_G229_N0.6990.65
171_L220_L0.6980.65
90_I176_L0.6960.64
150_Q154_P0.6960.64
54_L58_L0.6940.64
89_R94_Q0.6890.64
145_L157_E0.6880.64
55_L59_K0.6870.63
30_G211_T0.6870.63
171_L178_L0.6830.63
57_K153_K0.6820.63
58_L148_A0.6810.63
134_L225_M0.6810.63
75_T256_E0.6790.63
143_Q236_L0.6760.62
50_L140_I0.6740.62
118_W168_L0.6700.62
170_Q204_P0.6700.62
22_P51_P0.6680.61
232_W253_L0.6670.61
168_L171_L0.6660.61
159_E228_R0.6640.61
66_V71_S0.6630.61
24_I35_H0.6620.61
159_E252_H0.6570.60
44_S232_W0.6570.60
37_I149_K0.6560.60
176_L179_L0.6520.59
29_P33_H0.6510.59
46_D194_Q0.6480.59
79_N114_T0.6440.59
232_W236_L0.6420.58
253_L258_N0.6390.58
142_Y146_Q0.6390.58
64_L220_L0.6340.57
86_L118_W0.6300.57
47_M140_I0.6270.56
162_E193_L0.6250.56
90_I94_Q0.6210.56
176_L180_D0.6210.56
133_G139_G0.6190.56
174_K219_S0.6180.55
159_E249_G0.6160.55
229_N232_W0.6160.55
253_L260_P0.6130.55
200_W254_Y0.6070.54
71_S75_T0.6060.54
97_N100_H0.6050.54
133_G136_A0.6030.54
26_I54_L0.6020.53
222_D259_L0.6010.53
234_D238_A0.6010.53
212_L259_L0.5990.53
25_D153_K0.5990.53
55_L58_L0.5990.53
43_G232_W0.5980.53
96_Q99_Q0.5960.53
33_H243_R0.5950.53
158_L262_M0.5940.53
25_D253_L0.5940.53
66_V140_I0.5920.52
83_C176_L0.5910.52
52_T256_E0.5880.52
44_S131_K0.5880.52
236_L254_Y0.5860.52
118_W179_L0.5850.51
46_D127_T0.5850.51
47_M66_V0.5830.51
125_Q186_W0.5820.51
68_A164_Q0.5820.51
56_K60_N0.5810.51
43_G200_W0.5810.51
58_L245_V0.5810.51
29_P34_F0.5800.51
229_N258_N0.5770.50
105_M112_F0.5770.50
64_L153_K0.5750.50
229_N252_H0.5740.50
23_A157_E0.5740.50
140_I145_L0.5740.50
60_N153_K0.5740.50
47_M129_A0.5720.50
22_P43_G0.5700.50
72_T76_P0.5700.50
48_A201_L0.5700.50
29_P251_L0.5690.49
41_H229_N0.5680.49
93_E210_I0.5680.49
112_F120_I0.5670.49
21_W53_R0.5660.49
26_I57_K0.5660.49
257_G262_M0.5650.49
27_T35_H0.5630.49
207_N210_I0.5620.49
196_M205_P0.5620.49
203_A254_Y0.5610.48
91_S176_L0.5580.48
132_L190_A0.5570.48
42_M190_A0.5560.48
209_D213_P0.5550.48
121_A126_A0.5540.48
222_D230_L0.5530.48
155_V180_D0.5510.47
40_I258_N0.5510.47
24_I34_F0.5510.47
87_E110_S0.5500.47
91_S95_L0.5500.47
169_L204_P0.5490.47
48_A58_L0.5490.47
200_W239_M0.5470.47
46_D89_R0.5460.47
81_P114_T0.5450.47
24_I51_P0.5450.47
169_L175_G0.5450.47
37_I58_L0.5440.46
248_V252_H0.5440.46
172_P176_L0.5430.46
143_Q147_A0.5430.46
78_A83_C0.5350.45
91_S235_K0.5350.45
123_V136_A0.5340.45
84_E95_L0.5340.45
43_G49_P0.5320.45
40_I196_M0.5320.45
59_K207_N0.5310.45
68_A161_A0.5280.45
229_N249_G0.5270.44
59_K147_A0.5270.44
190_A198_S0.5260.44
188_T196_M0.5220.44
56_K202_N0.5220.44
253_L261_Q0.5220.44
170_Q188_T0.5220.44
195_Q207_N0.5210.44
172_P179_L0.5190.43
94_Q183_L0.5180.43
135_R138_Y0.5180.43
51_P203_A0.5170.43
70_V142_Y0.5160.43
44_S66_V0.5160.43
194_Q198_S0.5160.43
28_L32_R0.5150.43
68_A160_G0.5150.43
96_Q194_Q0.5140.43
206_Q245_V0.5130.43
56_K59_K0.5130.43
197_M201_L0.5120.43
178_L186_W0.5110.42
207_N211_T0.5080.42
234_D240_P0.5080.42
45_H74_D0.5060.42
36_L123_V0.5050.42
41_H248_V0.5050.42
98_L134_L0.5040.42
183_L216_F0.5030.42
146_Q224_L0.5010.41
189_N196_M0.5010.41
121_A160_G0.5000.41
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2g5gX 1 0.7311 92.2 0.917 Contact Map
2o7aA 1 0.3902 25.7 0.952 Contact Map
4lmiA 2 0.3106 24.1 0.953 Contact Map
3f14A 2 0.1894 18.2 0.955 Contact Map
3unoA 6 0.3258 17.7 0.956 Contact Map
5aigA 1 0.2917 16.1 0.957 Contact Map
5aihA 1 0.2765 15.3 0.957 Contact Map
1vqqA 1 0.2841 14.4 0.957 Contact Map
4cydA 2 0.3371 13.4 0.958 Contact Map
3ehcA 2 0.1856 12.8 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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