GREMLIN Database
YDER - Uncharacterized fimbrial-like protein YdeR
UniProt: P77294 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13800
Length: 167 (158)
Sequences: 3297 (2601)
Seq/√Len: 206.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
60_Q63_S3.0251.00
109_I142_A2.9621.00
97_Y108_Q2.9261.00
105_E152_S2.8921.00
112_R143_R2.7231.00
110_E143_R2.6711.00
84_V164_Y2.6081.00
110_E145_I2.5361.00
71_T137_Q2.5111.00
100_N156_I2.4941.00
40_T76_D2.4461.00
144_A156_I2.3891.00
98_Y121_N2.3051.00
73_S137_Q2.1901.00
42_Q75_T2.1751.00
106_N151_A2.1371.00
109_I158_A2.1021.00
59_Q63_S2.0841.00
103_T155_T2.0801.00
113_D117_A2.0691.00
120_K123_D2.0181.00
43_T46_A1.9451.00
116_D141_K1.9191.00
18_T22_Q1.8071.00
71_T139_P1.7971.00
67_W143_R1.7801.00
98_Y160_I1.7691.00
42_Q73_S1.6851.00
97_Y145_I1.6261.00
64_A110_E1.6001.00
89_T122_G1.5521.00
69_N141_K1.5051.00
89_T163_I1.5001.00
60_Q146_T1.4831.00
93_D147_V1.4811.00
15_A19_A1.4621.00
96_G120_K1.4371.00
48_V70_I1.4071.00
53_L65_S1.4001.00
51_G68_H1.3941.00
90_G93_D1.3791.00
51_G156_I1.3741.00
69_N139_P1.3661.00
46_A72_L1.3631.00
11_A15_A1.3511.00
70_I111_L1.3401.00
51_G66_G1.3341.00
110_E118_A1.3011.00
97_Y110_E1.2971.00
58_L146_T1.2931.00
50_L144_A1.2801.00
21_L24_A1.2531.00
64_A143_R1.2521.00
33_R52_D1.2261.00
146_T150_N1.2141.00
13_F16_L1.2021.00
85_T165_T1.1881.00
86_A138_F1.1771.00
90_G98_Y1.1661.00
84_V136_A1.1631.00
111_L160_I1.1581.00
26_V30_V1.1471.00
106_N149_G1.1461.00
87_I124_S1.1441.00
50_L156_I1.1431.00
58_L107_I1.1311.00
17_F20_T1.1311.00
146_T151_A1.1281.00
59_Q146_T1.1221.00
92_T96_G1.1151.00
16_L19_A1.1101.00
64_A112_R1.1031.00
64_A145_I1.0931.00
88_V111_L1.0741.00
57_N65_S1.0481.00
67_W141_K1.0251.00
40_T75_T1.0251.00
29_T159_L1.0241.00
102_G155_T1.0221.00
54_Y57_N1.0141.00
58_L151_A1.0081.00
58_L147_V1.0031.00
50_L109_I1.0021.00
100_N157_E0.9921.00
20_T24_A0.9911.00
101_E159_L0.9831.00
19_A23_A0.9781.00
131_E134_R0.9711.00
18_T23_A0.9651.00
31_N49_N0.9540.99
36_A55_T0.9490.99
19_A22_Q0.9480.99
130_D136_A0.9440.99
88_V140_L0.9420.99
17_F22_Q0.9300.99
72_L162_V0.9220.99
17_F21_L0.9210.99
12_T15_A0.9170.99
11_A14_C0.9050.99
36_A78_P0.8980.99
14_C17_F0.8930.99
112_R141_K0.8880.99
12_T19_A0.8660.99
34_V151_A0.8470.99
87_I165_T0.8460.99
98_Y158_A0.8450.99
58_L63_S0.8400.99
9_L12_T0.8370.99
16_L23_A0.8360.99
26_V162_V0.8280.99
91_S99_K0.8170.98
53_L144_A0.8090.98
123_D126_T0.8070.98
92_T121_N0.8060.98
86_A164_Y0.8060.98
10_L13_F0.8030.98
74_L136_A0.8010.98
31_N47_N0.7980.98
11_A17_F0.7960.98
53_L156_I0.7940.98
73_S135_N0.7910.98
109_I156_I0.7810.98
46_A162_V0.7770.98
104_A107_I0.7770.98
63_S146_T0.7680.98
27_T45_E0.7640.98
38_P144_A0.7600.97
49_N68_H0.7490.97
17_F23_A0.7490.97
53_L58_L0.7470.97
95_T98_Y0.7400.97
111_L121_N0.7350.97
50_L68_H0.7330.97
16_L22_Q0.7310.97
101_E157_E0.7240.97
10_L14_C0.7230.97
124_S165_T0.7200.96
18_T21_L0.7190.96
107_I144_A0.7130.96
58_L149_G0.7120.96
11_A18_T0.7060.96
112_R116_D0.7050.96
51_G157_E0.7000.96
64_A67_W0.6940.96
49_N144_A0.6910.96
29_T45_E0.6890.95
16_L20_T0.6880.95
48_V142_A0.6850.95
50_L142_A0.6830.95
34_V53_L0.6830.95
67_W112_R0.6820.95
79_V133_T0.6790.95
130_D133_T0.6760.95
61_P147_V0.6650.95
11_A20_T0.6620.94
49_N52_D0.6600.94
146_T149_G0.6600.94
75_T135_N0.6580.94
13_F21_L0.6570.94
38_P78_P0.6510.94
129_V133_T0.6510.94
125_K140_L0.6500.94
90_G159_L0.6480.94
119_L125_K0.6460.94
15_A20_T0.6440.94
93_D108_Q0.6420.93
29_T47_N0.6410.93
50_L70_I0.6270.93
28_I160_I0.6250.93
112_R118_A0.6210.92
65_S68_H0.6190.92
55_T153_Q0.6180.92
55_T151_A0.6170.92
121_N158_A0.6120.92
121_N140_L0.6110.92
144_A157_E0.6110.92
129_V132_I0.6080.91
14_C18_T0.6060.91
50_L53_L0.6050.91
89_T161_N0.6050.91
88_V162_V0.6030.91
100_N107_I0.6020.91
71_T92_T0.6010.91
93_D99_K0.5940.91
28_I47_N0.5880.90
38_P81_T0.5880.90
114_D139_P0.5850.90
19_A24_A0.5840.90
35_V78_P0.5810.90
10_L22_Q0.5780.89
47_N161_N0.5780.89
121_N160_I0.5750.89
28_I88_V0.5720.89
81_T86_A0.5690.89
100_N104_A0.5670.88
88_V119_L0.5640.88
57_N66_G0.5640.88
78_P81_T0.5620.88
128_I131_E0.5610.88
83_A133_T0.5580.88
107_I146_T0.5540.87
90_G99_K0.5510.87
43_T75_T0.5500.87
84_V140_L0.5490.87
47_N70_I0.5450.86
104_A158_A0.5450.86
37_K56_R0.5450.86
40_T78_P0.5450.86
112_R145_I0.5410.86
59_Q151_A0.5400.86
95_T123_D0.5380.86
42_Q135_N0.5370.86
50_L110_E0.5370.86
17_F24_A0.5340.85
88_V164_Y0.5330.85
50_L143_R0.5310.85
10_L21_L0.5280.85
83_A127_V0.5260.84
38_P88_V0.5250.84
106_N150_N0.5250.84
100_N103_T0.5220.84
86_A162_V0.5220.84
10_L18_T0.5220.84
38_P164_Y0.5200.84
83_A153_Q0.5120.83
125_K130_D0.5120.83
85_T125_K0.5070.82
11_A19_A0.5070.82
15_A79_V0.5070.82
84_V130_D0.5070.82
68_H142_A0.5050.82
74_L166_W0.5040.82
61_P150_N0.5020.82
131_E164_Y0.5010.81
13_F22_Q0.5010.81
38_P90_G0.5000.81
78_P112_R0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jmrA 1 0.8683 100 0.258 Contact Map
2xg5B 1 0.8144 100 0.264 Contact Map
2jtyA 1 0.8862 100 0.276 Contact Map
2uy6B 2 0.8323 100 0.291 Contact Map
1pdkB 1 0.7964 100 0.311 Contact Map
3bfqG 1 0.7904 100 0.333 Contact Map
3bwuF 1 0.7066 99.9 0.357 Contact Map
2w07B 1 0.6826 99.9 0.37 Contact Map
5afoA 1 0.982 99.9 0.38 Contact Map
4dwhB 1 0.7665 99.9 0.382 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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